Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1516
Gene name
Locationscaffold_154:7622..8220
Strand+
Gene length (bp)598
Transcript length (bp)399
Coding sequence length (bp)396
Protein length (aa) 132

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 3.27 0.0 7.05
CcL In ants, during behavior modification 2.74 0.0 6.28
CcD In ants, recently dead 0.98 0.0 2.73

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.813692 no
SC16a CcD 0.175024 no
CcL CcD 0.247162 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1516
MKLTATVLLAGAAVVVARNLKYGTCPKTDEVCEIEKQNCCEGSICLKGDSGAAQGICTTCNAVGEDCVPYATATN
GPGCCSGLTCSMQFLLPGDRGLCLESDDDSDPEPSPKPSPKPSPKPAQANPESHAHP
Coding >Ophio5|1516
ATGAAGCTCACCGCGACTGTTTTGCTTGCCGGCGCTGCGGTGGTCGTTGCCCGCAACTTAAAATATGGCACCTGT
CCGAAGACCGACGAAGTGTGTGAGATTGAGAAGCAAAATTGCTGCGAGGGAAGCATTTGCCTAAAGGGCGACTCC
GGAGCTGCTCAAGGAATATGCACCACATGCAACGCGGTCGGTGAAGACTGCGTGCCGTATGCTACGGCTACTAAC
GGTCCCGGCTGTTGCTCGGGGCTTACGTGCTCTATGCAGTTCCTGCTGCCCGGAGATCGAGGGTTGTGTCTCGAA
TCTGACGACGATTCCGATCCGGAGCCGTCCCCGAAGCCGTCCCCAAAGCCGTCCCCAAAGCCAGCCCAAGCCAAC
CCCGAGTCCCATGCCCACCCC
Transcript >Ophio5|1516
ATGAAGCTCACCGCGACTGTTTTGCTTGCCGGCGCTGCGGTGGTCGTTGCCCGCAACTTAAAATATGGCACCTGT
CCGAAGACCGACGAAGTGTGTGAGATTGAGAAGCAAAATTGCTGCGAGGGAAGCATTTGCCTAAAGGGCGACTCC
GGAGCTGCTCAAGGAATATGCACCACATGCAACGCGGTCGGTGAAGACTGCGTGCCGTATGCTACGGCTACTAAC
GGTCCCGGCTGTTGCTCGGGGCTTACGTGCTCTATGCAGTTCCTGCTGCCCGGAGATCGAGGGTTGTGTCTCGAA
TCTGACGACGATTCCGATCCGGAGCCGTCCCCGAAGCCGTCCCCAAAGCCGTCCCCAAAGCCAGCCCAAGCCAAC
CCCGAGTCCCATGCCCACCCCTGA
Gene >Ophio5|1516
ATGAAGCTCACCGCGACTGTTTTGCTTGCCGGCGCTGCGGTGGTCGTTGCCCGCAACTTAAAATATGGCACCTGT
CCGAAGACCGACGAAGTGTGTGAGATTGAGAAGCAAAATTGCTGCGAGGGAAGCATTTGCCTAAAGGGCGACTCC
GGAGCTGCTCAAGGAATAGTATGTCATCGAGCTACCTACATACCAGCAGCAGCGAGAAAACTAATATTCCACGAA
ACCCAGTGCACCACATGCAACGCGGTCGGTGAAGACTGCGTGCCGTATGCTACGGCTACTAACGGTCCCGGCTGT
TGCTCGGGGCTTACGTGCTCTATGCAGTTCCTGCTGCCCGGAGATCGAGGGTTGGTATGCTTGACGGCAATATTG
CAGATGTATGTTGAACCGAGAGTATTGACACGATCCAGTGTCTCGAATCTGACGACGATTCCGATCCGGAGCCGT
CCCCGAAGCCGTCCCCAAAGCCGTCCCCAAAGCCGTCCTCGAAGCCGTCCTCGAAGCCGTCTCCGAAGCCGTCCC
CCTCGCCTAAGAAGCCCTACCGGAAACCAAGCCCAGAGCCCAAGCCAACCCCGAGTCCCATGCCCACCCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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