© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1497 |
| Gene name | |
| Location | scaffold_152:33572..34162 |
| Strand | - |
| Gene length (bp) | 590 |
| Transcript length (bp) | 381 |
| Coding sequence length (bp) | 378 |
| Protein length (aa) | 126 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 51 | 17 |
| 2 | 61 | 83 | 22 |
| 3 | 90 | 112 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 30.33 | 8.52 | 52.15 |
| CcL | In ants, during behavior modification | 26.82 | 6.30 | 47.33 |
| CcD | In ants, recently dead | 24.48 | 6.53 | 42.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.779848 | no |
| SC16a | CcD | 0.591746 | no |
| CcL | CcD | 0.842165 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1497 MNHNYRVNQEDPLLRTPPDITSRITRLKGRYRRGAVLAAAFDLSTALDRALESPEAAAAAAAAAAAAAAAAAAAL VVAAAVVVAVVADVVVVVVGVVVVVVVVAAAAAAAAAAAAALQAAAMTWSS |
| Coding | >Ophio5|1497 ATGAACCACAATTACAGAGTGAATCAAGAGGATCCATTACTTCGTACACCTCCAGATATCACCAGCCGCATTACC AGACTGAAAGGCCGATACCGCCGCGGCGCTGTGCTAGCCGCGGCATTCGATCTCTCGACGGCTTTGGACCGTGCC CTAGAGTCACCCGAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCTT GTGGTTGCTGCTGCGGTTGTTGTTGCTGTTGTTGCTGATGTTGTTGTTGTTGTTGTTGGTGTTGTTGTTGTTGTT GTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTGCAAGCTGCGGCGATGACGTGGAGC TCC |
| Transcript | >Ophio5|1497 ATGAACCACAATTACAGAGTGAATCAAGAGGATCCATTACTTCGTACACCTCCAGATATCACCAGCCGCATTACC AGACTGAAAGGCCGATACCGCCGCGGCGCTGTGCTAGCCGCGGCATTCGATCTCTCGACGGCTTTGGACCGTGCC CTAGAGTCACCCGAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCTT GTGGTTGCTGCTGCGGTTGTTGTTGCTGTTGTTGCTGATGTTGTTGTTGTTGTTGTTGGTGTTGTTGTTGTTGTT GTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTGCAAGCTGCGGCGATGACGTGGAGC TCCTGA |
| Gene | >Ophio5|1497 ATGAACCACAATTACAGAGTGAATCAAGAGGATCCATTACTTCGTACACCTCCAGATATCACCAGCCGCATTACC AGGTATCAGTCATCGCAAATCACAACACAAACCATGAACCATCCAAGCCATCCTCTAACCTCGCCAACCATCACC ACCCCATCCTCCCCCAACATAGCCCACCGCGTGTGCTCCCACCCTTCCATCATCGCGACGAGGCTGACCGCGCGC GTCAGACTGAAAGGCCGATACCGCCGCGGCGTACCTCATCGAATCGCCCGCGTTGTGAAGACCAGACGTCGTGAC CGGCGCTACAGGCTGTGCTAGCCGCGGCATTCGATCTCTCGACGGCTTTGGACCGTGCCCTAGAGTCACCCGAGG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCTTGTGGTTGCTGCTGCGG TTGTTGTTGCTGTTGTTGCTGATGTTGTTGTTGTTGTTGTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTGCAAGCTGCGGCGATGACGTGGAGCTCCTGA |