Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1486
Gene name
Locationscaffold_152:11595..12639
Strand+
Gene length (bp)1044
Transcript length (bp)1044
Coding sequence length (bp)1041
Protein length (aa) 347

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00704 Glyco_hydro_18 Glycosyl hydrolases family 18 2.6E-13 10 232

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P29027|CHI2_RHIOL Chitinase 2 OS=Rhizopus oligosporus GN=CHI2 PE=1 SV=1 9 268 3.0E-10
sp|P29026|CHI1_RHIOL Chitinase 1 OS=Rhizopus oligosporus GN=CHI1 PE=1 SV=1 9 303 9.0E-10

GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1486
MPPLPNPLPRIITYYQTHRTPSNTHISILPLATPASATHVILAAIHINHDPCGLTLNDDPADSPRYTTLWAELRV
LQASGVKVLAMLGGAAQGTFSRLDLRPGFQDGHGDDGFEAYYAPLHHLIRHRSLDGLDLDVEEQTSLAGIIRLID
RLRRDFGPEFIITLAPVASALLNPTSNLSGFDYEALEVLRGSEIAWYNAQFYCGWGDLSNTRMYELILAKGWPAQ
KVVIGLVTNHANGSGFVPWPVLEPVLQRIARSHRDFGGVMGWEYFNSLPGDTHRPWEWARVMARLLRPSHHTLNV
EPPLPAPSPVVDRAASLNDADPDEVGGHPLPVPAPFDYVSDGDDARG
Coding >Ophio5|1486
ATGCCTCCCCTTCCAAACCCCCTTCCCCGCATCATAACCTACTACCAAACGCACCGCACCCCCTCCAACACGCAC
ATTTCCATCCTCCCGCTCGCGACCCCCGCCTCGGCAACCCACGTAATCCTCGCAGCCATACACATTAACCACGAT
CCCTGCGGTCTGACGCTCAACGACGACCCCGCCGACTCCCCTCGTTACACCACTCTCTGGGCCGAGCTTCGTGTC
CTTCAGGCGTCGGGCGTAAAAGTGCTCGCCATGCTCGGCGGCGCTGCTCAAGGCACCTTTTCGAGACTCGACCTT
CGACCGGGTTTTCAAGATGGTCACGGTGATGATGGTTTTGAGGCTTATTATGCTCCACTACATCATCTTATTCGT
CATCGCTCTTTGGACGGTCTAGACCTCGACGTAGAAGAACAAACATCCCTGGCAGGCATCATTCGCCTCATCGAC
CGACTTCGTCGGGATTTCGGCCCAGAATTCATAATAACCCTCGCCCCCGTTGCCTCCGCACTGCTGAACCCAACC
TCCAACCTCAGCGGCTTCGACTACGAAGCCCTCGAGGTCCTCCGCGGCTCCGAGATCGCTTGGTACAACGCCCAG
TTTTACTGTGGTTGGGGCGACCTCTCAAACACGCGCATGTACGAACTCATCCTCGCAAAGGGCTGGCCCGCGCAA
AAGGTCGTCATCGGTCTCGTCACCAACCACGCCAACGGAAGCGGCTTCGTCCCCTGGCCCGTCCTCGAGCCCGTT
CTTCAGCGGATAGCAAGGAGCCATAGAGACTTTGGCGGCGTCATGGGCTGGGAGTACTTTAATAGCCTACCCGGC
GACACCCATCGACCCTGGGAATGGGCCCGGGTCATGGCCCGGCTGTTGAGGCCCTCTCATCATACTCTCAACGTC
GAGCCTCCTCTCCCGGCGCCGAGTCCCGTCGTCGACCGGGCTGCCTCGCTCAACGACGCCGACCCGGACGAGGTC
GGCGGCCATCCGCTGCCGGTGCCGGCGCCCTTTGACTACGTCTCTGACGGAGATGATGCGCGGGGG
Transcript >Ophio5|1486
ATGCCTCCCCTTCCAAACCCCCTTCCCCGCATCATAACCTACTACCAAACGCACCGCACCCCCTCCAACACGCAC
ATTTCCATCCTCCCGCTCGCGACCCCCGCCTCGGCAACCCACGTAATCCTCGCAGCCATACACATTAACCACGAT
CCCTGCGGTCTGACGCTCAACGACGACCCCGCCGACTCCCCTCGTTACACCACTCTCTGGGCCGAGCTTCGTGTC
CTTCAGGCGTCGGGCGTAAAAGTGCTCGCCATGCTCGGCGGCGCTGCTCAAGGCACCTTTTCGAGACTCGACCTT
CGACCGGGTTTTCAAGATGGTCACGGTGATGATGGTTTTGAGGCTTATTATGCTCCACTACATCATCTTATTCGT
CATCGCTCTTTGGACGGTCTAGACCTCGACGTAGAAGAACAAACATCCCTGGCAGGCATCATTCGCCTCATCGAC
CGACTTCGTCGGGATTTCGGCCCAGAATTCATAATAACCCTCGCCCCCGTTGCCTCCGCACTGCTGAACCCAACC
TCCAACCTCAGCGGCTTCGACTACGAAGCCCTCGAGGTCCTCCGCGGCTCCGAGATCGCTTGGTACAACGCCCAG
TTTTACTGTGGTTGGGGCGACCTCTCAAACACGCGCATGTACGAACTCATCCTCGCAAAGGGCTGGCCCGCGCAA
AAGGTCGTCATCGGTCTCGTCACCAACCACGCCAACGGAAGCGGCTTCGTCCCCTGGCCCGTCCTCGAGCCCGTT
CTTCAGCGGATAGCAAGGAGCCATAGAGACTTTGGCGGCGTCATGGGCTGGGAGTACTTTAATAGCCTACCCGGC
GACACCCATCGACCCTGGGAATGGGCCCGGGTCATGGCCCGGCTGTTGAGGCCCTCTCATCATACTCTCAACGTC
GAGCCTCCTCTCCCGGCGCCGAGTCCCGTCGTCGACCGGGCTGCCTCGCTCAACGACGCCGACCCGGACGAGGTC
GGCGGCCATCCGCTGCCGGTGCCGGCGCCCTTTGACTACGTCTCTGACGGAGATGATGCGCGGGGGTGA
Gene >Ophio5|1486
ATGCCTCCCCTTCCAAACCCCCTTCCCCGCATCATAACCTACTACCAAACGCACCGCACCCCCTCCAACACGCAC
ATTTCCATCCTCCCGCTCGCGACCCCCGCCTCGGCAACCCACGTAATCCTCGCAGCCATACACATTAACCACGAT
CCCTGCGGTCTGACGCTCAACGACGACCCCGCCGACTCCCCTCGTTACACCACTCTCTGGGCCGAGCTTCGTGTC
CTTCAGGCGTCGGGCGTAAAAGTGCTCGCCATGCTCGGCGGCGCTGCTCAAGGCACCTTTTCGAGACTCGACCTT
CGACCGGGTTTTCAAGATGGTCACGGTGATGATGGTTTTGAGGCTTATTATGCTCCACTACATCATCTTATTCGT
CATCGCTCTTTGGACGGTCTAGACCTCGACGTAGAAGAACAAACATCCCTGGCAGGCATCATTCGCCTCATCGAC
CGACTTCGTCGGGATTTCGGCCCAGAATTCATAATAACCCTCGCCCCCGTTGCCTCCGCACTGCTGAACCCAACC
TCCAACCTCAGCGGCTTCGACTACGAAGCCCTCGAGGTCCTCCGCGGCTCCGAGATCGCTTGGTACAACGCCCAG
TTTTACTGTGGTTGGGGCGACCTCTCAAACACGCGCATGTACGAACTCATCCTCGCAAAGGGCTGGCCCGCGCAA
AAGGTCGTCATCGGTCTCGTCACCAACCACGCCAACGGAAGCGGCTTCGTCCCCTGGCCCGTCCTCGAGCCCGTT
CTTCAGCGGATAGCAAGGAGCCATAGAGACTTTGGCGGCGTCATGGGCTGGGAGTACTTTAATAGCCTACCCGGC
GACACCCATCGACCCTGGGAATGGGCCCGGGTCATGGCCCGGCTGTTGAGGCCCTCTCATCATACTCTCAACGTC
GAGCCTCCTCTCCCGGCGCCGAGTCCCGTCGTCGACCGGGCTGCCTCGCTCAACGACGCCGACCCGGACGAGGTC
GGCGGCCATCCGCTGCCGGTGCCGGCGCCCTTTGACTACGTCTCTGACGGAGATGATGCGCGGGGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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