Protein ID | Ophio5|1457 |
Gene name | |
Location | scaffold_150:21067..22747 |
Strand | - |
Gene length (bp) | 1680 |
Transcript length (bp) | 1680 |
Coding sequence length (bp) | 1677 |
Protein length (aa) | 559 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01846 | FF | FF domain | 5.6E-11 | 280 | 330 |
PF00397 | WW | WW domain | 7.2E-09 | 19 | 48 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q09685|DRE4_SCHPO | Pre-mRNA-splicing factor dre4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dre4 PE=1 SV=1 | 16 | 455 | 6.0E-37 |
sp|Q8CGF7|TCRG1_MOUSE | Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 | 9 | 513 | 1.0E-14 |
sp|Q9LT25|PR40C_ARATH | Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1 | 23 | 511 | 2.0E-08 |
sp|F4JCC1|PR35B_ARATH | Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 | 23 | 403 | 8.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 25 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1457 MLKSTYKPSAAALAAAAPLPPGWTEHKAPTGHSYYYNANTKQSTYRRPGLPVAEAQPLPSLVSSPAPPYAHIPTL SDPRVANAYVAQFAPTPAPPRDNARAGLQGRPRPQPVDKPVRKEAIPGYEPWVLVYTKYSRRFVHHPIKNTSFWR IPEKLLTGVLELDKARVRAKASGDGGDEKDEGNQGGKMEKPADIAVPGEDDGEASEYEEVEVSDDDLDDEHRSKR QRTGESASGDEGERDEVVEFTEADIAAQLQMMGDDDAADWPEDLNGVPAFSEDDAKCLFKDLLDDFDINPYSPWD KLVEEGRLVDDPRYTALTTMRTRKECWDEWSRERIASRLEQRAKQEVKDPKIAYLALLQDKATPKLYWPEFKRKY KKEAPMRDAKLSDKDREKAYREHIGRLKLPHATLKSDLMALLKAQPNHLLHVRSLSDGLPTPVLTDIRYISLAPQ ERDALVEAYVQSLPPPPPAGEDIDDAEREDRKRECEARERRERALEEHNRAVEEQRRMRAREVAASKARLRQGER EIEMAMRVDKRGLQSQLARELTDKPTEPSPGEPN |
Coding | >Ophio5|1457 ATGCTGAAATCCACATACAAGCCTTCTGCCGCCGCCCTGGCCGCAGCAGCGCCGCTTCCACCCGGATGGACGGAG CATAAGGCGCCCACAGGCCACAGCTATTACTACAATGCCAACACCAAGCAGTCAACCTACCGCCGTCCCGGACTA CCCGTCGCTGAAGCTCAGCCCCTGCCGTCTCTCGTGTCGTCTCCCGCGCCGCCATACGCGCACATCCCGACCCTC TCCGATCCCCGCGTTGCAAATGCCTATGTCGCCCAGTTCGCCCCGACGCCCGCGCCGCCTCGAGACAATGCTCGC GCAGGCCTCCAGGGGCGGCCGCGTCCGCAGCCGGTAGACAAACCTGTGCGGAAAGAGGCCATACCGGGGTACGAG CCGTGGGTGCTCGTTTACACAAAATATTCAAGGCGCTTCGTCCACCATCCTATCAAAAACACCAGCTTCTGGCGC ATCCCGGAGAAGCTACTGACCGGTGTCCTGGAGCTAGACAAGGCGCGAGTGCGGGCCAAGGCGTCTGGTGATGGA GGGGACGAAAAGGATGAGGGCAACCAAGGCGGCAAGATGGAAAAGCCTGCCGACATTGCCGTCCCAGGCGAGGAC GACGGCGAAGCCTCCGAGTACGAGGAGGTCGAGGTCAGCGATGACGACCTAGACGACGAGCATCGCTCGAAGCGG CAACGAACGGGCGAGTCTGCTAGCGGCGACGAGGGCGAGAGGGACGAGGTCGTCGAGTTCACCGAAGCGGACATT GCCGCGCAGCTACAGATGATGGGCGACGACGACGCGGCAGACTGGCCCGAGGACCTCAACGGGGTACCCGCATTC TCCGAGGACGATGCCAAATGTCTCTTCAAAGATCTTCTCGACGACTTCGACATCAATCCCTACAGTCCCTGGGAT AAGCTCGTCGAAGAGGGCCGTCTCGTCGACGACCCGCGCTACACTGCGCTGACCACGATGCGAACGCGCAAGGAG TGCTGGGACGAGTGGTCACGGGAGAGGATCGCGTCGCGTCTGGAGCAGAGGGCCAAGCAGGAGGTCAAGGACCCC AAGATTGCGTACTTGGCTCTCCTACAAGACAAGGCGACGCCCAAGTTGTACTGGCCCGAATTTAAGCGCAAGTAC AAGAAGGAAGCGCCGATGAGGGACGCCAAGCTGTCCGATAAGGACCGGGAAAAGGCGTATCGCGAGCACATTGGC CGATTGAAGCTGCCGCACGCCACGCTCAAGTCGGACCTGATGGCACTGCTCAAGGCGCAACCCAACCACCTGCTG CACGTGAGGTCTCTCTCGGACGGTCTGCCGACGCCGGTCCTGACCGACATCCGCTACATATCGCTCGCGCCCCAG GAGCGTGACGCGCTCGTCGAGGCCTACGTGCAGTCGCTGCCGCCACCGCCACCGGCCGGTGAGGACATCGACGAC GCGGAAAGGGAAGACAGGAAGAGAGAGTGTGAGGCGCGAGAAAGGCGCGAGAGGGCACTGGAGGAGCACAATCGC GCGGTCGAGGAACAGCGGAGGATGAGGGCTCGGGAGGTGGCTGCTAGCAAGGCGCGGCTGCGACAGGGGGAGAGA GAGATTGAGATGGCGATGCGGGTGGACAAAAGGGGACTGCAGAGTCAGCTCGCTCGCGAGCTGACAGACAAGCCG ACCGAGCCGTCGCCGGGAGAGCCCAAT |
Transcript | >Ophio5|1457 ATGCTGAAATCCACATACAAGCCTTCTGCCGCCGCCCTGGCCGCAGCAGCGCCGCTTCCACCCGGATGGACGGAG CATAAGGCGCCCACAGGCCACAGCTATTACTACAATGCCAACACCAAGCAGTCAACCTACCGCCGTCCCGGACTA CCCGTCGCTGAAGCTCAGCCCCTGCCGTCTCTCGTGTCGTCTCCCGCGCCGCCATACGCGCACATCCCGACCCTC TCCGATCCCCGCGTTGCAAATGCCTATGTCGCCCAGTTCGCCCCGACGCCCGCGCCGCCTCGAGACAATGCTCGC GCAGGCCTCCAGGGGCGGCCGCGTCCGCAGCCGGTAGACAAACCTGTGCGGAAAGAGGCCATACCGGGGTACGAG CCGTGGGTGCTCGTTTACACAAAATATTCAAGGCGCTTCGTCCACCATCCTATCAAAAACACCAGCTTCTGGCGC ATCCCGGAGAAGCTACTGACCGGTGTCCTGGAGCTAGACAAGGCGCGAGTGCGGGCCAAGGCGTCTGGTGATGGA GGGGACGAAAAGGATGAGGGCAACCAAGGCGGCAAGATGGAAAAGCCTGCCGACATTGCCGTCCCAGGCGAGGAC GACGGCGAAGCCTCCGAGTACGAGGAGGTCGAGGTCAGCGATGACGACCTAGACGACGAGCATCGCTCGAAGCGG CAACGAACGGGCGAGTCTGCTAGCGGCGACGAGGGCGAGAGGGACGAGGTCGTCGAGTTCACCGAAGCGGACATT GCCGCGCAGCTACAGATGATGGGCGACGACGACGCGGCAGACTGGCCCGAGGACCTCAACGGGGTACCCGCATTC TCCGAGGACGATGCCAAATGTCTCTTCAAAGATCTTCTCGACGACTTCGACATCAATCCCTACAGTCCCTGGGAT AAGCTCGTCGAAGAGGGCCGTCTCGTCGACGACCCGCGCTACACTGCGCTGACCACGATGCGAACGCGCAAGGAG TGCTGGGACGAGTGGTCACGGGAGAGGATCGCGTCGCGTCTGGAGCAGAGGGCCAAGCAGGAGGTCAAGGACCCC AAGATTGCGTACTTGGCTCTCCTACAAGACAAGGCGACGCCCAAGTTGTACTGGCCCGAATTTAAGCGCAAGTAC AAGAAGGAAGCGCCGATGAGGGACGCCAAGCTGTCCGATAAGGACCGGGAAAAGGCGTATCGCGAGCACATTGGC CGATTGAAGCTGCCGCACGCCACGCTCAAGTCGGACCTGATGGCACTGCTCAAGGCGCAACCCAACCACCTGCTG CACGTGAGGTCTCTCTCGGACGGTCTGCCGACGCCGGTCCTGACCGACATCCGCTACATATCGCTCGCGCCCCAG GAGCGTGACGCGCTCGTCGAGGCCTACGTGCAGTCGCTGCCGCCACCGCCACCGGCCGGTGAGGACATCGACGAC GCGGAAAGGGAAGACAGGAAGAGAGAGTGTGAGGCGCGAGAAAGGCGCGAGAGGGCACTGGAGGAGCACAATCGC GCGGTCGAGGAACAGCGGAGGATGAGGGCTCGGGAGGTGGCTGCTAGCAAGGCGCGGCTGCGACAGGGGGAGAGA GAGATTGAGATGGCGATGCGGGTGGACAAAAGGGGACTGCAGAGTCAGCTCGCTCGCGAGCTGACAGACAAGCCG ACCGAGCCGTCGCCGGGAGAGCCCAATTAA |
Gene | >Ophio5|1457 ATGCTGAAATCCACATACAAGCCTTCTGCCGCCGCCCTGGCCGCAGCAGCGCCGCTTCCACCCGGATGGACGGAG CATAAGGCGCCCACAGGCCACAGCTATTACTACAATGCCAACACCAAGCAGTCAACCTACCGCCGTCCCGGACTA CCCGTCGCTGAAGCTCAGCCCCTGCCGTCTCTCGTGTCGTCTCCCGCGCCGCCATACGCGCACATCCCGACCCTC TCCGATCCCCGCGTTGCAAATGCCTATGTCGCCCAGTTCGCCCCGACGCCCGCGCCGCCTCGAGACAATGCTCGC GCAGGCCTCCAGGGGCGGCCGCGTCCGCAGCCGGTAGACAAACCTGTGCGGAAAGAGGCCATACCGGGGTACGAG CCGTGGGTGCTCGTTTACACAAAATATTCAAGGCGCTTCGTCCACCATCCTATCAAAAACACCAGCTTCTGGCGC ATCCCGGAGAAGCTACTGACCGGTGTCCTGGAGCTAGACAAGGCGCGAGTGCGGGCCAAGGCGTCTGGTGATGGA GGGGACGAAAAGGATGAGGGCAACCAAGGCGGCAAGATGGAAAAGCCTGCCGACATTGCCGTCCCAGGCGAGGAC GACGGCGAAGCCTCCGAGTACGAGGAGGTCGAGGTCAGCGATGACGACCTAGACGACGAGCATCGCTCGAAGCGG CAACGAACGGGCGAGTCTGCTAGCGGCGACGAGGGCGAGAGGGACGAGGTCGTCGAGTTCACCGAAGCGGACATT GCCGCGCAGCTACAGATGATGGGCGACGACGACGCGGCAGACTGGCCCGAGGACCTCAACGGGGTACCCGCATTC TCCGAGGACGATGCCAAATGTCTCTTCAAAGATCTTCTCGACGACTTCGACATCAATCCCTACAGTCCCTGGGAT AAGCTCGTCGAAGAGGGCCGTCTCGTCGACGACCCGCGCTACACTGCGCTGACCACGATGCGAACGCGCAAGGAG TGCTGGGACGAGTGGTCACGGGAGAGGATCGCGTCGCGTCTGGAGCAGAGGGCCAAGCAGGAGGTCAAGGACCCC AAGATTGCGTACTTGGCTCTCCTACAAGACAAGGCGACGCCCAAGTTGTACTGGCCCGAATTTAAGCGCAAGTAC AAGAAGGAAGCGCCGATGAGGGACGCCAAGCTGTCCGATAAGGACCGGGAAAAGGCGTATCGCGAGCACATTGGC CGATTGAAGCTGCCGCACGCCACGCTCAAGTCGGACCTGATGGCACTGCTCAAGGCGCAACCCAACCACCTGCTG CACGTGAGGTCTCTCTCGGACGGTCTGCCGACGCCGGTCCTGACCGACATCCGCTACATATCGCTCGCGCCCCAG GAGCGTGACGCGCTCGTCGAGGCCTACGTGCAGTCGCTGCCGCCACCGCCACCGGCCGGTGAGGACATCGACGAC GCGGAAAGGGAAGACAGGAAGAGAGAGTGTGAGGCGCGAGAAAGGCGCGAGAGGGCACTGGAGGAGCACAATCGC GCGGTCGAGGAACAGCGGAGGATGAGGGCTCGGGAGGTGGCTGCTAGCAAGGCGCGGCTGCGACAGGGGGAGAGA GAGATTGAGATGGCGATGCGGGTGGACAAAAGGGGACTGCAGAGTCAGCTCGCTCGCGAGCTGACAGACAAGCCG ACCGAGCCGTCGCCGGGAGAGCCCAATTAA |