© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1456 |
| Gene name | |
| Location | scaffold_150:19361..20985 |
| Strand | + |
| Gene length (bp) | 1624 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1551 |
| Protein length (aa) | 517 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01008 | IF-2B | Initiation factor 2 subunit family | 3.4E-19 | 311 | 495 |
| PF00293 | NUDIX | NUDIX domain | 7.4E-11 | 16 | 136 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O58185|EI2BL_PYRHO | Putative translation initiation factor eIF-2B subunit 2-like OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0440 PE=1 SV=1 | 315 | 494 | 1.0E-09 |
| sp|Q7UF90|MTNA_RHOBA | Methylthioribose-1-phosphate isomerase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) GN=mtnA PE=3 SV=1 | 335 | 500 | 1.0E-08 |
| sp|O57947|R15PI_PYRHO | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 | 315 | 493 | 1.0E-07 |
| sp|A4ILL1|MTNA_GEOTN | Methylthioribose-1-phosphate isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=mtnA PE=3 SV=1 | 314 | 497 | 2.0E-07 |
| sp|A4VLZ8|MTNA_PSEU5 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2 | 287 | 493 | 2.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O58185|EI2BL_PYRHO | Putative translation initiation factor eIF-2B subunit 2-like OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0440 PE=1 SV=1 | 315 | 494 | 1.0E-09 |
| sp|Q7UF90|MTNA_RHOBA | Methylthioribose-1-phosphate isomerase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) GN=mtnA PE=3 SV=1 | 335 | 500 | 1.0E-08 |
| sp|O57947|R15PI_PYRHO | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 | 315 | 493 | 1.0E-07 |
| sp|A4ILL1|MTNA_GEOTN | Methylthioribose-1-phosphate isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=mtnA PE=3 SV=1 | 314 | 497 | 2.0E-07 |
| sp|A4VLZ8|MTNA_PSEU5 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2 | 287 | 493 | 2.0E-07 |
| sp|Q4K8M6|MTNA_PSEF5 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=mtnA PE=3 SV=1 | 287 | 504 | 3.0E-07 |
| sp|Q9V281|R15PI_PYRAB | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB01930 PE=3 SV=1 | 315 | 493 | 4.0E-07 |
| sp|B1J5G5|MTNA_PSEPW | Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain W619) GN=mtnA PE=3 SV=1 | 334 | 510 | 6.0E-07 |
| sp|A4XTE5|MTNA_PSEMY | Methylthioribose-1-phosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=mtnA PE=3 SV=1 | 334 | 504 | 8.0E-07 |
| sp|A7GS56|MTNA_BACCN | Methylthioribose-1-phosphate isomerase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=mtnA PE=3 SV=1 | 314 | 497 | 1.0E-06 |
| sp|A6V2Q6|MTNA_PSEA7 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=mtnA PE=3 SV=1 | 287 | 493 | 1.0E-06 |
| sp|C5D7U5|MTNA_GEOSW | Methylthioribose-1-phosphate isomerase OS=Geobacillus sp. (strain WCH70) GN=mtnA PE=3 SV=1 | 314 | 507 | 3.0E-06 |
| sp|A6LE92|MTNA_PARD8 | Methylthioribose-1-phosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mtnA PE=3 SV=2 | 334 | 493 | 4.0E-06 |
| sp|A5W7G2|MTNA_PSEP1 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=mtnA PE=3 SV=1 | 334 | 504 | 4.0E-06 |
| sp|Q48FM6|MTNA_PSE14 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=mtnA PE=3 SV=1 | 287 | 504 | 5.0E-06 |
| sp|Q8KBH1|MTNA_CHLTE | Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=mtnA PE=3 SV=1 | 299 | 504 | 5.0E-06 |
| sp|Q99LC8|EI2BA_MOUSE | Translation initiation factor eIF-2B subunit alpha OS=Mus musculus GN=Eif2b1 PE=1 SV=1 | 314 | 495 | 6.0E-06 |
| sp|B0KTX5|MTNA_PSEPG | Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=mtnA PE=3 SV=1 | 334 | 504 | 8.0E-06 |
| sp|Q885T7|MTNA_PSESM | Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=mtnA PE=3 SV=1 | 287 | 504 | 8.0E-06 |
| sp|Q9HZ65|MTNA_PSEAE | Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mtnA PE=3 SV=1 | 287 | 493 | 9.0E-06 |
| sp|Q02PX5|MTNA_PSEAB | Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mtnA PE=3 SV=1 | 287 | 493 | 9.0E-06 |
| sp|B7V9J7|MTNA_PSEA8 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=mtnA PE=3 SV=1 | 287 | 493 | 9.0E-06 |
| sp|Q4ZQ92|MTNA_PSEU2 | Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=mtnA PE=3 SV=2 | 287 | 504 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0044237 | cellular metabolic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 60.02 | 33.19 | 86.84 |
| CcL | In ants, during behavior modification | 36.87 | 18.81 | 54.93 |
| CcD | In ants, recently dead | 37.44 | 19.82 | 55.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.030349 | yes |
| SC16a | CcD | 0.036796 | yes |
| CcL | CcD | 0.958869 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1456 MATVPEKRAVAGSFIFRLSPEGRRPQVALFRRSAEVRTYRHRYAPISGSVEADDADALTTAWRELAEETGLGPSS LRLLRQGKPYSFVDEAVGREWTINPFAFALRTDGPGEAAIKLDREHESFAWFDPAEIPEDDNDGGDIDATSSSFR GVPHLLDSLRRVWFELELRPAAAAAVLDDGLRRLRDDHTSGARQLASVALDTLIRVLPVLHRPPNDSARWWRSLR IAAWHLWKNGREAMGASILRLLLDALTLVETKLPPDGTDSLPDGFIDNVLDALQGIAQRRLESGAALQEAFASFV RRDQATRADTSPIRIISLSSSATVASCLDRALAQGLALDVHVLESRPLFEGASMARAIAASIRAAGNLPGASVSV HTDASVALAARGANILLLGADLIDASGNVSNKTGSLPAVLAVRHVAPAVKVVVVAESEKVLPLDSPSASEDNNPD QVSRAWADDDRAATQAGNVHLSNVYFEWVPAGLIDSYITEAGVATGEDIAGLARDARARLDRFFSNL |
| Coding | >Ophio5|1456 ATGGCCACGGTGCCCGAGAAGCGCGCCGTAGCCGGCAGCTTCATCTTTCGACTCAGCCCCGAGGGCCGACGGCCT CAGGTGGCGTTGTTTCGGAGGAGCGCCGAGGTAAGGACGTACCGGCATCGCTATGCGCCCATCTCCGGCAGCGTC GAGGCGGACGACGCCGATGCGCTGACGACGGCTTGGCGAGAGCTCGCTGAGGAGACGGGTCTAGGACCTAGCTCG CTTCGTCTGCTGCGCCAGGGCAAGCCTTACTCGTTCGTCGACGAGGCTGTTGGCCGCGAGTGGACTATCAATCCC TTTGCTTTCGCTCTGCGCACAGATGGGCCCGGCGAGGCTGCTATCAAACTCGATCGCGAGCATGAGAGCTTCGCC TGGTTCGACCCGGCCGAAATTCCTGAAGACGACAACGATGGCGGCGACATAGACGCTACCTCTTCGTCCTTTCGC GGCGTCCCGCATCTCCTCGACAGCCTGCGCCGCGTCTGGTTTGAGCTCGAGCTCCGTCCCGCCGCCGCCGCTGCC GTCCTCGACGACGGCTTGCGCCGTCTGCGCGACGATCACACCAGCGGTGCTCGACAGCTGGCTTCGGTCGCCCTC GATACCTTGATCCGTGTCTTGCCCGTTCTCCATCGTCCGCCCAATGACTCGGCTCGCTGGTGGCGCAGCCTGCGT ATCGCCGCCTGGCACCTGTGGAAAAACGGCCGCGAAGCCATGGGCGCCTCTATTCTTCGCCTGCTTCTCGATGCC CTGACCCTCGTCGAGACGAAATTACCCCCTGATGGCACAGACAGTCTACCTGACGGCTTCATCGACAACGTCCTC GACGCCTTACAGGGAATCGCTCAGCGGCGGCTCGAATCCGGCGCGGCGCTCCAAGAAGCCTTCGCCTCCTTCGTC CGTCGTGACCAGGCCACCCGCGCCGACACCTCGCCTATCCGTATCATCAGCCTCTCATCCAGCGCGACCGTCGCC TCGTGCCTCGACCGCGCCCTCGCCCAGGGACTCGCTCTCGACGTGCACGTGCTCGAGTCCCGCCCGCTCTTCGAG GGCGCCTCCATGGCCCGCGCCATCGCCGCCTCCATACGCGCCGCGGGGAACCTCCCGGGGGCCAGCGTCTCCGTT CATACCGATGCCAGTGTCGCCCTCGCCGCCCGCGGCGCCAACATTCTCCTCCTTGGTGCCGACCTTATCGACGCG AGCGGCAACGTCAGCAACAAGACGGGCTCGCTGCCTGCCGTCCTCGCTGTTCGTCACGTCGCCCCTGCCGTCAAG GTTGTTGTCGTCGCCGAGAGCGAAAAGGTACTGCCTCTCGACTCTCCCTCGGCATCTGAGGACAATAACCCGGAC CAAGTCTCGCGCGCCTGGGCAGACGATGACCGTGCAGCCACTCAGGCGGGTAATGTCCACCTCTCCAACGTCTAC TTCGAGTGGGTGCCGGCCGGCCTCATCGACTCCTACATCACCGAGGCTGGCGTCGCGACGGGGGAGGATATCGCT GGCTTGGCGCGAGACGCTCGGGCGCGGCTGGACCGTTTCTTCTCCAATTTG |
| Transcript | >Ophio5|1456 ATGGCCACGGTGCCCGAGAAGCGCGCCGTAGCCGGCAGCTTCATCTTTCGACTCAGCCCCGAGGGCCGACGGCCT CAGGTGGCGTTGTTTCGGAGGAGCGCCGAGGTAAGGACGTACCGGCATCGCTATGCGCCCATCTCCGGCAGCGTC GAGGCGGACGACGCCGATGCGCTGACGACGGCTTGGCGAGAGCTCGCTGAGGAGACGGGTCTAGGACCTAGCTCG CTTCGTCTGCTGCGCCAGGGCAAGCCTTACTCGTTCGTCGACGAGGCTGTTGGCCGCGAGTGGACTATCAATCCC TTTGCTTTCGCTCTGCGCACAGATGGGCCCGGCGAGGCTGCTATCAAACTCGATCGCGAGCATGAGAGCTTCGCC TGGTTCGACCCGGCCGAAATTCCTGAAGACGACAACGATGGCGGCGACATAGACGCTACCTCTTCGTCCTTTCGC GGCGTCCCGCATCTCCTCGACAGCCTGCGCCGCGTCTGGTTTGAGCTCGAGCTCCGTCCCGCCGCCGCCGCTGCC GTCCTCGACGACGGCTTGCGCCGTCTGCGCGACGATCACACCAGCGGTGCTCGACAGCTGGCTTCGGTCGCCCTC GATACCTTGATCCGTGTCTTGCCCGTTCTCCATCGTCCGCCCAATGACTCGGCTCGCTGGTGGCGCAGCCTGCGT ATCGCCGCCTGGCACCTGTGGAAAAACGGCCGCGAAGCCATGGGCGCCTCTATTCTTCGCCTGCTTCTCGATGCC CTGACCCTCGTCGAGACGAAATTACCCCCTGATGGCACAGACAGTCTACCTGACGGCTTCATCGACAACGTCCTC GACGCCTTACAGGGAATCGCTCAGCGGCGGCTCGAATCCGGCGCGGCGCTCCAAGAAGCCTTCGCCTCCTTCGTC CGTCGTGACCAGGCCACCCGCGCCGACACCTCGCCTATCCGTATCATCAGCCTCTCATCCAGCGCGACCGTCGCC TCGTGCCTCGACCGCGCCCTCGCCCAGGGACTCGCTCTCGACGTGCACGTGCTCGAGTCCCGCCCGCTCTTCGAG GGCGCCTCCATGGCCCGCGCCATCGCCGCCTCCATACGCGCCGCGGGGAACCTCCCGGGGGCCAGCGTCTCCGTT CATACCGATGCCAGTGTCGCCCTCGCCGCCCGCGGCGCCAACATTCTCCTCCTTGGTGCCGACCTTATCGACGCG AGCGGCAACGTCAGCAACAAGACGGGCTCGCTGCCTGCCGTCCTCGCTGTTCGTCACGTCGCCCCTGCCGTCAAG GTTGTTGTCGTCGCCGAGAGCGAAAAGGTACTGCCTCTCGACTCTCCCTCGGCATCTGAGGACAATAACCCGGAC CAAGTCTCGCGCGCCTGGGCAGACGATGACCGTGCAGCCACTCAGGCGGGTAATGTCCACCTCTCCAACGTCTAC TTCGAGTGGGTGCCGGCCGGCCTCATCGACTCCTACATCACCGAGGCTGGCGTCGCGACGGGGGAGGATATCGCT GGCTTGGCGCGAGACGCTCGGGCGCGGCTGGACCGTTTCTTCTCCAATTTGTGA |
| Gene | >Ophio5|1456 ATGGCCACGGTGCCCGAGAAGCGCGCCGTAGCCGGCAGCTTCATCTTTCGACTCAGCCCCGAGGGCCGACGGCCT CAGGTGGCGTTGTTTCGGAGGAGCGCCGAGGTAAGGACGTACCGGTAGGTCCCTTGTCGTCCGCATGCGTCCTGG CCGAGCTCAGCTGGGAGCGTAAATCGTCTCGAGTTTCAGGCATCGCTATGCGCCCATCTCCGGCAGCGTCGAGGC GGACGACGCCGATGCGCTGACGACGGCTTGGCGAGAGCTCGCTGAGGAGACGGGTCTAGGACCTAGCTCGCTTCG TCTGCTGCGCCAGGGCAAGCCTTACTCGTTCGTCGACGAGGCTGTTGGCCGCGAGTGGACTATCAATCCCTTTGC TTTCGCTCTGCGCACAGATGGGCCCGGCGAGGCTGCTATCAAACTCGATCGCGAGCATGAGAGCTTCGCCTGGTT CGACCCGGCCGAAATTCCTGAAGACGACAACGATGGCGGCGACATAGACGCTACCTCTTCGTCCTTTCGCGGCGT CCCGCATCTCCTCGACAGCCTGCGCCGCGTCTGGTTTGAGCTCGAGCTCCGTCCCGCCGCCGCCGCTGCCGTCCT CGACGACGGCTTGCGCCGTCTGCGCGACGATCACACCAGCGGTGCTCGACAGCTGGCTTCGGTCGCCCTCGATAC CTTGATCCGTGTCTTGCCCGTTCTCCATCGTCCGCCCAATGACTCGGCTCGCTGGTGGCGCAGCCTGCGTATCGC CGCCTGGCACCTGTGGAAAAACGGCCGCGAAGCCATGGGCGCCTCTATTCTTCGCCTGCTTCTCGATGCCCTGAC CCTCGTCGAGACGAAATTACCCCCTGATGGCACAGACAGTCTACCTGACGGCTTCATCGACAACGTCCTCGACGC CTTACAGGGAATCGCTCAGCGGCGGCTCGAATCCGGCGCGGCGCTCCAAGAAGCCTTCGCCTCCTTCGTCCGTCG TGACCAGGCCACCCGCGCCGACACCTCGCCTATCCGTATCATCAGCCTCTCATCCAGCGCGACCGTCGCCTCGTG CCTCGACCGCGCCCTCGCCCAGGGACTCGCTCTCGACGTGCACGTGCTCGAGTCCCGCCCGCTCTTCGAGGGCGC CTCCATGGCCCGCGCCATCGCCGCCTCCATACGCGCCGCGGGGAACCTCCCGGGGGCCAGCGTCTCCGTTCATAC CGATGCCAGTGTCGCCCTCGCCGCCCGCGGCGCCAACATTCTCCTCCTTGGTGCCGACCTTATCGACGCGAGCGG CAACGTCAGCAACAAGACGGGCTCGCTGCCTGCCGTCCTCGCTGTTCGTCACGTCGCCCCTGCCGTCAAGGTTGT TGTCGTCGCCGAGAGCGAAAAGGTACTGCCTCTCGACTCTCCCTCGGCATCTGAGGACAATAACCCGGACCAAGT CTCGCGCGCCTGGGCAGACGATGACCGTGCAGCCACTCAGGCGGGTAATGTCCACCTCTCCAACGTCTACTTCGA GTGGGTGCCGGCCGGCCTCATCGACTCCTACATCACCGAGGCTGGCGTCGCGACGGGGGAGGATATCGCTGGCTT GGCGCGAGACGCTCGGGCGCGGCTGGACCGTTTCTTCTCCAATTTGTGA |