Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1432
Gene name
Locationscaffold_15:17500..18319
Strand+
Gene length (bp)819
Transcript length (bp)819
Coding sequence length (bp)816
Protein length (aa) 272

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 3062.89 848.79 5276.99
CcL In ants, during behavior modification 51.04 23.91 78.17
CcD In ants, recently dead 19.30 7.21 31.39

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.000535 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1432
MVHKSAIALGVLGIATSVAAKVKPWYEPRWFECMISENSEKCLGTERFCTSLAVTRHFSPEICFNEREPNPNPNH
DLKPWRNPGASVECNANAQSEACLGTEAYCSGDEGRKEYGSSDDCFGNHKAKPHVQKPDAQLKPWRQGQRNKGAF
DCRVSPNGEACVGTDEFCRGDQGRRQFGTADACFGAHEPKPQAAQATPQPQPQPQPQPQPLPSRPSVVQKPAMAW
KERDPKACLFVPNEACLGTEEFCNTEVRGIQGFKTPQECFDAHEPRP
Coding >Ophio5|1432
ATGGTTCACAAGTCAGCCATTGCCCTGGGCGTTCTCGGCATCGCCACCAGCGTCGCGGCCAAGGTGAAGCCCTGG
TACGAGCCGCGATGGTTCGAATGCATGATCAGCGAGAACTCGGAGAAGTGCCTCGGCACGGAAAGGTTCTGCACC
AGCCTGGCCGTGACGAGGCACTTTTCGCCCGAGATATGCTTCAACGAGCGAGAGCCGAACCCGAATCCCAATCAC
GACCTTAAGCCGTGGCGCAATCCAGGAGCTTCAGTCGAGTGCAACGCCAACGCGCAAAGTGAAGCTTGCCTCGGC
ACAGAAGCCTATTGCTCCGGCGATGAGGGGAGAAAGGAATACGGATCGAGCGACGATTGCTTCGGCAACCACAAA
GCCAAGCCTCATGTCCAGAAACCGGATGCTCAGCTGAAACCATGGCGGCAAGGTCAGAGGAACAAGGGTGCTTTC
GACTGCCGAGTATCGCCCAATGGCGAAGCCTGCGTCGGCACCGACGAGTTTTGCCGCGGCGACCAGGGACGTCGA
CAGTTCGGAACTGCCGATGCCTGCTTTGGCGCGCACGAGCCGAAGCCTCAAGCTGCTCAGGCCACGCCTCAACCT
CAGCCTCAGCCTCAGCCTCAGCCTCAGCCGCTTCCCAGTCGGCCAAGTGTGGTGCAGAAGCCGGCTATGGCCTGG
AAGGAGCGAGACCCAAAGGCCTGTCTGTTCGTCCCGAACGAGGCCTGTCTCGGCACCGAGGAATTTTGCAACACC
GAGGTGCGTGGAATACAAGGCTTCAAGACTCCGCAGGAGTGCTTCGATGCGCATGAGCCCAGACCT
Transcript >Ophio5|1432
ATGGTTCACAAGTCAGCCATTGCCCTGGGCGTTCTCGGCATCGCCACCAGCGTCGCGGCCAAGGTGAAGCCCTGG
TACGAGCCGCGATGGTTCGAATGCATGATCAGCGAGAACTCGGAGAAGTGCCTCGGCACGGAAAGGTTCTGCACC
AGCCTGGCCGTGACGAGGCACTTTTCGCCCGAGATATGCTTCAACGAGCGAGAGCCGAACCCGAATCCCAATCAC
GACCTTAAGCCGTGGCGCAATCCAGGAGCTTCAGTCGAGTGCAACGCCAACGCGCAAAGTGAAGCTTGCCTCGGC
ACAGAAGCCTATTGCTCCGGCGATGAGGGGAGAAAGGAATACGGATCGAGCGACGATTGCTTCGGCAACCACAAA
GCCAAGCCTCATGTCCAGAAACCGGATGCTCAGCTGAAACCATGGCGGCAAGGTCAGAGGAACAAGGGTGCTTTC
GACTGCCGAGTATCGCCCAATGGCGAAGCCTGCGTCGGCACCGACGAGTTTTGCCGCGGCGACCAGGGACGTCGA
CAGTTCGGAACTGCCGATGCCTGCTTTGGCGCGCACGAGCCGAAGCCTCAAGCTGCTCAGGCCACGCCTCAACCT
CAGCCTCAGCCTCAGCCTCAGCCTCAGCCGCTTCCCAGTCGGCCAAGTGTGGTGCAGAAGCCGGCTATGGCCTGG
AAGGAGCGAGACCCAAAGGCCTGTCTGTTCGTCCCGAACGAGGCCTGTCTCGGCACCGAGGAATTTTGCAACACC
GAGGTGCGTGGAATACAAGGCTTCAAGACTCCGCAGGAGTGCTTCGATGCGCATGAGCCCAGACCTTGA
Gene >Ophio5|1432
ATGGTTCACAAGTCAGCCATTGCCCTGGGCGTTCTCGGCATCGCCACCAGCGTCGCGGCCAAGGTGAAGCCCTGG
TACGAGCCGCGATGGTTCGAATGCATGATCAGCGAGAACTCGGAGAAGTGCCTCGGCACGGAAAGGTTCTGCACC
AGCCTGGCCGTGACGAGGCACTTTTCGCCCGAGATATGCTTCAACGAGCGAGAGCCGAACCCGAATCCCAATCAC
GACCTTAAGCCGTGGCGCAATCCAGGAGCTTCAGTCGAGTGCAACGCCAACGCGCAAAGTGAAGCTTGCCTCGGC
ACAGAAGCCTATTGCTCCGGCGATGAGGGGAGAAAGGAATACGGATCGAGCGACGATTGCTTCGGCAACCACAAA
GCCAAGCCTCATGTCCAGAAACCGGATGCTCAGCTGAAACCATGGCGGCAAGGTCAGAGGAACAAGGGTGCTTTC
GACTGCCGAGTATCGCCCAATGGCGAAGCCTGCGTCGGCACCGACGAGTTTTGCCGCGGCGACCAGGGACGTCGA
CAGTTCGGAACTGCCGATGCCTGCTTTGGCGCGCACGAGCCGAAGCCTCAAGCTGCTCAGGCCACGCCTCAACCT
CAGCCTCAGCCTCAGCCTCAGCCTCAGCCGCTTCCCAGTCGGCCAAGTGTGGTGCAGAAGCCGGCTATGGCCTGG
AAGGAGCGAGACCCAAAGGCCTGTCTGTTCGTCCCGAACGAGGCCTGTCTCGGCACCGAGGAATTTTGCAACACC
GAGGTGCGTGGAATACAAGGCTTCAAGACTCCGCAGGAGTGCTTCGATGCGCATGAGCCCAGACCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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