Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1428
Gene name
Location	scaffold_15:10037..11583
Strand	-
Gene length (bp)	1546
Transcript length (bp)	1281
Coding sequence length (bp)	1278
Protein length (aa)	426

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	8.5E-14	244	297

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O14166\|YDX3_SCHPO	Uncharacterized protein C4C5.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4C5.03 PE=4 SV=1	137	333	2.0E-21

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 48	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	167	189	22
2	210	232	22
3	242	264	22
4	271	293	22
5	303	325	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	54.77	29.62	79.93
CcL	In ants, during behavior modification	54.91	29.06	80.76
CcD	In ants, recently dead	63.60	34.65	92.55

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.993148	no
SC16a	CcD	0.561529	no
CcL	CcD	0.566652	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1428 MESFEYRTIQYPGHPLVTCLDDETAASQPRRYSHRCIQPRLRPHHARIAARLAPARQSLAVSRRLSPSPPPATER HDHLLSPADAPAFLASSRLPKPGKPWAISGSWMAPGASGSGRRRIWSLSSPLSSSSDYSSRFANILTVPPSREAI GCCRELGAFDCAAGLLGVAQLGVQWLCFTLILILFLIFFRYREANVPQGELGGESPKWQTAVAVGLLCVLHGLIV VILTGVFAMALPSHLTAWANALGVMAALLAAVQYVPQIWMTYRLKHVGSLSIPMMCIQTPGGFLFAASLFARLGL AGWSTWVIYLLTATMQGVVLVLGVYYEMASRRQDGHPVDFVGGVPRSPLEHSPSSQRPAASRTYSEGWERGLPGP FTGHPERYAETEEDLDHMQEREARAIARENQPLLRPGGIGNPRRNYGSSRG
Coding	>Ophio5\|1428 ATGGAGTCGTTCGAGTATCGGACTATTCAATATCCGGGTCATCCTCTCGTCACGTGCCTCGATGATGAAACTGCG GCCAGCCAGCCTCGTCGGTACTCCCATCGATGCATTCAGCCTCGCCTCCGCCCGCATCACGCCCGCATCGCCGCC CGCCTTGCGCCTGCTCGCCAGTCGTTAGCCGTTAGCCGTCGTCTGTCTCCTTCTCCGCCGCCCGCTACCGAGCGT CATGATCATCTACTGAGTCCTGCTGACGCGCCGGCATTTCTCGCTTCGAGTCGCCTGCCAAAACCCGGCAAGCCA TGGGCCATCTCTGGGAGCTGGATGGCGCCGGGTGCGAGCGGCTCCGGTCGCCGTCGTATCTGGAGCTTGTCGTCT CCATTGTCATCCTCATCGGACTACTCCTCTCGCTTCGCCAACATTCTCACCGTCCCGCCCTCGCGTGAGGCCATC GGCTGCTGCAGGGAGCTGGGCGCATTCGACTGCGCCGCGGGTCTACTCGGCGTCGCCCAGCTCGGGGTACAATGG CTGTGCTTTACTCTGATCCTCATCCTCTTCCTCATCTTCTTCCGCTACCGCGAAGCCAATGTGCCCCAGGGCGAG CTAGGCGGAGAGTCGCCAAAGTGGCAGACGGCCGTCGCCGTCGGTCTTTTATGCGTCTTGCACGGACTAATTGTC GTCATCCTCACCGGCGTCTTCGCTATGGCATTACCTAGCCATCTAACTGCGTGGGCCAACGCCCTCGGCGTCATG GCTGCACTCCTCGCCGCCGTACAGTACGTGCCACAGATCTGGATGACGTATCGCCTCAAGCACGTCGGGAGTCTG AGTATCCCCATGATGTGCATCCAAACACCTGGCGGCTTCCTCTTTGCTGCCAGTCTCTTCGCCCGGCTTGGGCTT GCCGGTTGGAGCACTTGGGTCATTTACCTCTTGACGGCAACCATGCAGGGTGTCGTTCTCGTACTCGGCGTTTAC TATGAGATGGCGTCCCGTCGACAGGACGGCCACCCGGTCGACTTCGTCGGAGGCGTGCCGCGCTCGCCGCTGGAA CATTCTCCCTCATCACAGCGGCCGGCCGCGAGCCGCACATACTCTGAGGGCTGGGAGCGCGGGTTGCCGGGGCCC TTTACCGGCCATCCAGAGCGCTACGCCGAGACGGAGGAGGACCTCGACCACATGCAAGAGCGGGAAGCGCGAGCC ATTGCGCGGGAGAACCAGCCGTTGCTTCGACCCGGTGGCATTGGCAACCCGCGTCGGAATTATGGCTCGAGTCGC GGT
Transcript	>Ophio5\|1428 ATGGAGTCGTTCGAGTATCGGACTATTCAATATCCGGGTCATCCTCTCGTCACGTGCCTCGATGATGAAACTGCG GCCAGCCAGCCTCGTCGGTACTCCCATCGATGCATTCAGCCTCGCCTCCGCCCGCATCACGCCCGCATCGCCGCC CGCCTTGCGCCTGCTCGCCAGTCGTTAGCCGTTAGCCGTCGTCTGTCTCCTTCTCCGCCGCCCGCTACCGAGCGT CATGATCATCTACTGAGTCCTGCTGACGCGCCGGCATTTCTCGCTTCGAGTCGCCTGCCAAAACCCGGCAAGCCA TGGGCCATCTCTGGGAGCTGGATGGCGCCGGGTGCGAGCGGCTCCGGTCGCCGTCGTATCTGGAGCTTGTCGTCT CCATTGTCATCCTCATCGGACTACTCCTCTCGCTTCGCCAACATTCTCACCGTCCCGCCCTCGCGTGAGGCCATC GGCTGCTGCAGGGAGCTGGGCGCATTCGACTGCGCCGCGGGTCTACTCGGCGTCGCCCAGCTCGGGGTACAATGG CTGTGCTTTACTCTGATCCTCATCCTCTTCCTCATCTTCTTCCGCTACCGCGAAGCCAATGTGCCCCAGGGCGAG CTAGGCGGAGAGTCGCCAAAGTGGCAGACGGCCGTCGCCGTCGGTCTTTTATGCGTCTTGCACGGACTAATTGTC GTCATCCTCACCGGCGTCTTCGCTATGGCATTACCTAGCCATCTAACTGCGTGGGCCAACGCCCTCGGCGTCATG GCTGCACTCCTCGCCGCCGTACAGTACGTGCCACAGATCTGGATGACGTATCGCCTCAAGCACGTCGGGAGTCTG AGTATCCCCATGATGTGCATCCAAACACCTGGCGGCTTCCTCTTTGCTGCCAGTCTCTTCGCCCGGCTTGGGCTT GCCGGTTGGAGCACTTGGGTCATTTACCTCTTGACGGCAACCATGCAGGGTGTCGTTCTCGTACTCGGCGTTTAC TATGAGATGGCGTCCCGTCGACAGGACGGCCACCCGGTCGACTTCGTCGGAGGCGTGCCGCGCTCGCCGCTGGAA CATTCTCCCTCATCACAGCGGCCGGCCGCGAGCCGCACATACTCTGAGGGCTGGGAGCGCGGGTTGCCGGGGCCC TTTACCGGCCATCCAGAGCGCTACGCCGAGACGGAGGAGGACCTCGACCACATGCAAGAGCGGGAAGCGCGAGCC ATTGCGCGGGAGAACCAGCCGTTGCTTCGACCCGGTGGCATTGGCAACCCGCGTCGGAATTATGGCTCGAGTCGC GGTTGA
Gene	>Ophio5\|1428 ATGGAGTCGTTCGAGTATCGGACTATTCAATATCCGGGTCATCCTCTCGTCACGTGCCTCGATGATGAAACTGCG GCCAGCCAGCCTCGTCGGTACTCCCATCGATGCATTCAGCCTCGCCTCCGCCCGCATCACGCCCGCATCGCCGCC CGCCTTGCGCCTGCTCGCCAGTCGTTAGCCGTTAGCCGTCGTCTGTCTCCTTCTCCGCCGCCCGCTACCGAGCGT CATGATCATCTACTGAGTCCTGCTGACGCGCCGGCATTTCTCGCGTTCTCTCTTCCCCCCTCTTCCTTTGCTTTC CCCCTTACTCACGCCCTTGCTCAGTTCGAGTCGCCTGCCAAAACCCGGCAAGCCATGGGCCATCTCTGGGAGCTG GATGGCGCCGGGTGCGAGCGGCTCCGGTCGCCGTCGTATCTGGAGCTTGTCGTCTCCATGTGCGAAGCATCCCAT CTGGCCTCCCTTTTCAATGTCTCATCCAGCTGACGCCGGCTACAGTGTCATCCTCATCGGACTACTCCTCTCGTA CCTCCCACAGCACTACCGAATCGTTTCCCGAGGCACCTCGGAGGGAATATCACCTTACTTCGTTCTTCTCGGCAC CACCTCTGCCACCGCAGGCTTCGCCAACATTCTCACCGTCCCGCCCTCGCGTGAGGCCATCGGCTGCTGCAGGGA GCTGGGCGCATTCGACTGCGCCGCGGGTCTACTCGGCGTCGCCCAGCTCGGGGTACAATGGCTGTGCTTTACTCT GATGTAGGCGGTTCCCGAGGTGAGAGCATGCGTGTGCTCGCCGCTGACTCTTCGCAGCCTCATCCTCTTCCTCAT CTTCTTCCGCTACCGCGAAGCCAATGTGCCCCAGGGCGAGCTAGGCGGAGAGTCGCCAAAGTGGCAGACGGCCGT CGCCGTCGGTCTTTTATGCGTCTTGCACGGACTAATTGTCGTCATCCTCACCGGCGTCTTCGCTATGGCATTACC TAGCCATCTAACTGCGTGGGCCAACGCCCTCGGCGTCATGGCTGCACTCCTCGCCGCCGTACAGTACGTGCCACA GATCTGGATGACGTATCGCCTCAAGCACGTCGGGAGTCTGAGTATCCCCATGATGTGCATCCAAACACCTGGCGG CTTCCTCTTTGCTGCCAGTCTCTTCGCCCGGCTTGGGCTTGCCGGTTGGAGCACTTGGGTCATTTACCTCTTGAC GGCAACCATGCAGGGTGTCGTTCTCGTACTCGGCGTTTACTATGAGATGGCGTCCCGTCGACAGGACGGCCACCC GGTCGACTTCGTCGGAGGCGTGCCGCGCTCGCCGCTGGAACATTCTCCCTCATCACAGCGGCCGGCCGCGAGCCG CACATACTCTGAGGGCTGGGAGCGCGGGTTGCCGGGGCCCTTTACCGGCCATCCAGAGCGCTACGCCGAGACGGA GGAGGACCTCGACCACATGCAAGAGCGGGAAGCGCGAGCCATTGCGCGGGAGAACCAGCCGTTGCTTCGACCCGG TGGCATTGGCAACCCGCGTCGGAATTATGGCTCGAGTCGCGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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