Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|140
Gene name
Locationscaffold_101:12415..13201
Strand+
Gene length (bp)786
Transcript length (bp)786
Coding sequence length (bp)783
Protein length (aa) 261

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|140
MKPFLTCLTLLAGTALAAPTGGARPKTKPLGESGNTRGISTGSRGAVSPPLPQVNAEVVRQGVAAIQNPAAANAP
QGARPKNTAASRDQAQGSGQQTSETSRHTPGHRLSHPQSSSSEHGQSSSSGPGSSNNGQWSEGYNRAALEQHLNQ
ATAESSGEPSPPLGSRENPIPNGDPPPPYMKDPPKYDDVVIDDWARADAMKEKPYEPPPSYQPKHTPLIQASPPP
PYSKKPPHGHKTLDKTPKERPPSLLSRIRFSKGGES
Coding >Ophio5|140
ATGAAGCCTTTTCTCACATGTTTAACTCTCTTGGCGGGAACAGCTCTCGCCGCGCCTACAGGAGGTGCTAGACCT
AAAACGAAACCACTCGGCGAAAGTGGCAACACGAGGGGGATCTCGACGGGTTCGCGGGGTGCGGTGAGCCCGCCT
CTACCGCAGGTGAATGCGGAGGTCGTTCGTCAAGGAGTTGCCGCGATTCAAAACCCAGCTGCAGCCAATGCCCCT
CAAGGTGCCCGTCCCAAGAACACTGCAGCCTCTCGTGATCAGGCACAGGGTTCCGGTCAGCAGACATCGGAGACT
TCGAGGCATACGCCCGGCCATCGTCTTTCGCACCCTCAGTCCTCGAGCTCGGAGCACGGCCAAAGCTCCTCGTCA
GGCCCCGGGAGCAGCAACAACGGACAGTGGTCAGAGGGATACAATCGTGCAGCACTTGAGCAACATCTGAACCAG
GCCACGGCCGAGAGCAGCGGGGAGCCGAGTCCCCCCCTGGGAAGCAGAGAAAATCCCATCCCTAATGGTGACCCG
CCGCCGCCGTACATGAAAGACCCTCCCAAGTACGACGACGTTGTGATTGATGACTGGGCGCGGGCCGATGCTATG
AAAGAGAAGCCGTACGAGCCTCCGCCTTCTTACCAGCCAAAGCACACGCCGTTGATACAAGCATCCCCGCCGCCT
CCTTATAGTAAAAAACCACCACACGGGCACAAAACGCTGGATAAAACTCCGAAGGAACGTCCGCCCAGCCTGCTT
TCTCGAATTCGGTTCAGCAAAGGTGGAGAAAGC
Transcript >Ophio5|140
ATGAAGCCTTTTCTCACATGTTTAACTCTCTTGGCGGGAACAGCTCTCGCCGCGCCTACAGGAGGTGCTAGACCT
AAAACGAAACCACTCGGCGAAAGTGGCAACACGAGGGGGATCTCGACGGGTTCGCGGGGTGCGGTGAGCCCGCCT
CTACCGCAGGTGAATGCGGAGGTCGTTCGTCAAGGAGTTGCCGCGATTCAAAACCCAGCTGCAGCCAATGCCCCT
CAAGGTGCCCGTCCCAAGAACACTGCAGCCTCTCGTGATCAGGCACAGGGTTCCGGTCAGCAGACATCGGAGACT
TCGAGGCATACGCCCGGCCATCGTCTTTCGCACCCTCAGTCCTCGAGCTCGGAGCACGGCCAAAGCTCCTCGTCA
GGCCCCGGGAGCAGCAACAACGGACAGTGGTCAGAGGGATACAATCGTGCAGCACTTGAGCAACATCTGAACCAG
GCCACGGCCGAGAGCAGCGGGGAGCCGAGTCCCCCCCTGGGAAGCAGAGAAAATCCCATCCCTAATGGTGACCCG
CCGCCGCCGTACATGAAAGACCCTCCCAAGTACGACGACGTTGTGATTGATGACTGGGCGCGGGCCGATGCTATG
AAAGAGAAGCCGTACGAGCCTCCGCCTTCTTACCAGCCAAAGCACACGCCGTTGATACAAGCATCCCCGCCGCCT
CCTTATAGTAAAAAACCACCACACGGGCACAAAACGCTGGATAAAACTCCGAAGGAACGTCCGCCCAGCCTGCTT
TCTCGAATTCGGTTCAGCAAAGGTGGAGAAAGCTAG
Gene >Ophio5|140
ATGAAGCCTTTTCTCACATGTTTAACTCTCTTGGCGGGAACAGCTCTCGCCGCGCCTACAGGAGGTGCTAGACCT
AAAACGAAACCACTCGGCGAAAGTGGCAACACGAGGGGGATCTCGACGGGTTCGCGGGGTGCGGTGAGCCCGCCT
CTACCGCAGGTGAATGCGGAGGTCGTTCGTCAAGGAGTTGCCGCGATTCAAAACCCAGCTGCAGCCAATGCCCCT
CAAGGTGCCCGTCCCAAGAACACTGCAGCCTCTCGTGATCAGGCACAGGGTTCCGGTCAGCAGACATCGGAGACT
TCGAGGCATACGCCCGGCCATCGTCTTTCGCACCCTCAGTCCTCGAGCTCGGAGCACGGCCAAAGCTCCTCGTCA
GGCCCCGGGAGCAGCAACAACGGACAGTGGTCAGAGGGATACAATCGTGCAGCACTTGAGCAACATCTGAACCAG
GCCACGGCCGAGAGCAGCGGGGAGCCGAGTCCCCCCCTGGGAAGCAGAGAAAATCCCATCCCTAATGGTGACCCG
CCGCCGCCGTACATGAAAGACCCTCCCAAGTACGACGACGTTGTGATTGATGACTGGGCGCGGGCCGATGCTATG
AAAGAGAAGCCGTACGAGCCTCCGCCTTCTTACCAGCCAAAGCACACGCCGTTGATACAAGCATCCCCGCCGCCT
CCTTATAGTAAAAAACCACCACACGGGCACAAAACGCTGGATAAAACTCCGAAGGAACGTCCGCCCAGCCTGCTT
TCTCGAATTCGGTTCAGCAAAGGTGGAGAAAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail