Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1384
Gene name
Location	scaffold_147:27073..27749
Strand	+
Gene length (bp)	676
Transcript length (bp)	576
Coding sequence length (bp)	573
Protein length (aa)	191

PFAM Domains

(None)

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5BHG4\|LBUA_EMENI	Lactobacillus up-regulated protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lbuA PE=1 SV=2	49	178	4.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1384 MHSLRFLCQLSAFLLPLVSGSPAATDSTVRYVSGSVSAVANGMKFTDDGVFSLGSDGVLRTFTRNREVIDYRQLD PQQAKDLATKQILAWERSGKSVPASLTTVAESSVDGRLVTDVDQLMNPTEKPAIPDGQSESSVSSKVRRSAGELF SRAGPKVCPGSPGCQSLSDCQRHHCNACYFPHGPPHGTCFL
Coding	>Ophio5\|1384 ATGCACTCTCTTCGCTTTCTCTGCCAACTTTCGGCGTTTTTGCTACCTCTGGTCTCCGGTTCGCCTGCGGCTACA GATTCGACGGTTCGCTATGTTTCTGGGAGCGTGAGCGCGGTGGCCAACGGCATGAAATTCACCGACGATGGCGTC TTCAGCCTTGGCTCGGATGGTGTGCTTCGCACCTTCACCAGGAACCGCGAGGTCATCGACTACCGCCAGCTCGAT CCCCAGCAGGCCAAGGATCTGGCCACCAAGCAGATCCTTGCGTGGGAGCGCAGCGGCAAGTCCGTACCGGCCTCC CTCACCACCGTAGCCGAGTCTTCTGTCGACGGCCGCCTCGTCACCGATGTCGACCAGCTCATGAACCCGACCGAG AAGCCGGCGATCCCAGACGGTCAGTCAGAGTCTTCGGTCTCGTCAAAGGTTCGCCGCTCCGCCGGAGAGCTGTTT AGTCGAGCCGGTCCCAAGGTTTGCCCTGGATCGCCGGGTTGTCAAAGCCTTTCAGACTGTCAACGTCATCACTGC AACGCCTGTTACTTCCCTCATGGCCCCCCTCACGGAACTTGCTTCTTG
Transcript	>Ophio5\|1384 ATGCACTCTCTTCGCTTTCTCTGCCAACTTTCGGCGTTTTTGCTACCTCTGGTCTCCGGTTCGCCTGCGGCTACA GATTCGACGGTTCGCTATGTTTCTGGGAGCGTGAGCGCGGTGGCCAACGGCATGAAATTCACCGACGATGGCGTC TTCAGCCTTGGCTCGGATGGTGTGCTTCGCACCTTCACCAGGAACCGCGAGGTCATCGACTACCGCCAGCTCGAT CCCCAGCAGGCCAAGGATCTGGCCACCAAGCAGATCCTTGCGTGGGAGCGCAGCGGCAAGTCCGTACCGGCCTCC CTCACCACCGTAGCCGAGTCTTCTGTCGACGGCCGCCTCGTCACCGATGTCGACCAGCTCATGAACCCGACCGAG AAGCCGGCGATCCCAGACGGTCAGTCAGAGTCTTCGGTCTCGTCAAAGGTTCGCCGCTCCGCCGGAGAGCTGTTT AGTCGAGCCGGTCCCAAGGTTTGCCCTGGATCGCCGGGTTGTCAAAGCCTTTCAGACTGTCAACGTCATCACTGC AACGCCTGTTACTTCCCTCATGGCCCCCCTCACGGAACTTGCTTCTTGTAA
Gene	>Ophio5\|1384 ATGCACTCTCTTCGCTTTCTCTGCCAACTTTCGGCGTTTTTGCTACCTCTGGTATGCTTTCCCCCCCCCCTAAAC GATCCAGCACTTCTCTGGTTATGACCGATGAAAGCTCGACGCGGAAGCCCTGTTTTTTTTTCCACTGACGTTATA GGTCTCCGGTTCGCCTGCGGCTACAGATTCGACGGTTCGCTATGTTTCTGGGAGCGTGAGCGCGGTGGCCAACGG CATGAAATTCACCGACGATGGCGTCTTCAGCCTTGGCTCGGATGGTGTGCTTCGCACCTTCACCAGGAACCGCGA GGTCATCGACTACCGCCAGCTCGATCCCCAGCAGGCCAAGGATCTGGCCACCAAGCAGATCCTTGCGTGGGAGCG CAGCGGCAAGTCCGTACCGGCCTCCCTCACCACCGTAGCCGAGTCTTCTGTCGACGGCCGCCTCGTCACCGATGT CGACCAGCTCATGAACCCGACCGAGAAGCCGGCGATCCCAGACGGTCAGTCAGAGTCTTCGGTCTCGTCAAAGGT TCGCCGCTCCGCCGGAGAGCTGTTTAGTCGAGCCGGTCCCAAGGTTTGCCCTGGATCGCCGGGTTGTCAAAGCCT TTCAGACTGTCAACGTCATCACTGCAACGCCTGTTACTTCCCTCATGGCCCCCCTCACGGAACTTGCTTCTTGTA A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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