© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1381 |
| Gene name | |
| Location | scaffold_147:12219..13462 |
| Strand | - |
| Gene length (bp) | 1243 |
| Transcript length (bp) | 1116 |
| Coding sequence length (bp) | 1113 |
| Protein length (aa) | 371 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region | 2.3E-25 | 214 | 332 |
| PF14437 | MafB19-deam | MafB19-like deaminase | 7.0E-10 | 214 | 335 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O43012|DCTD_SCHPO | Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2 | 3 | 362 | 3.0E-98 |
| sp|P06773|DCTD_YEAST | Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCD1 PE=1 SV=2 | 125 | 356 | 8.0E-72 |
| sp|O22000|DCTD_BPMD2 | Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3 SV=2 | 211 | 333 | 2.0E-21 |
| sp|P32393|COMEB_BACSU | ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB PE=3 SV=1 | 211 | 354 | 4.0E-18 |
| sp|Q5M9G0|DCTD_RAT | Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1 | 214 | 363 | 6.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O43012|DCTD_SCHPO | Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2 | 3 | 362 | 3.0E-98 |
| sp|P06773|DCTD_YEAST | Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCD1 PE=1 SV=2 | 125 | 356 | 8.0E-72 |
| sp|O22000|DCTD_BPMD2 | Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3 SV=2 | 211 | 333 | 2.0E-21 |
| sp|P32393|COMEB_BACSU | ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB PE=3 SV=1 | 211 | 354 | 4.0E-18 |
| sp|Q5M9G0|DCTD_RAT | Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1 | 214 | 363 | 6.0E-18 |
| sp|Q8K2D6|DCTD_MOUSE | Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1 | 214 | 363 | 6.0E-18 |
| sp|Q5RC69|DCTD_PONAB | Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1 | 214 | 363 | 5.0E-17 |
| sp|P32321|DCTD_HUMAN | Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2 | 214 | 363 | 5.0E-17 |
| sp|Q9VWA2|DCTD_DROME | Probable deoxycytidylate deaminase OS=Drosophila melanogaster GN=CG6951 PE=2 SV=1 | 214 | 357 | 1.0E-14 |
| sp|P33968|YLXG_ALIFS | Uncharacterized deaminase in luxG 3'region OS=Aliivibrio fischeri PE=3 SV=1 | 214 | 352 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0002100 | tRNA wobble adenosine to inosine editing | Yes |
| GO:0008251 | tRNA-specific adenosine deaminase activity | Yes |
| GO:0043412 | macromolecule modification | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0019239 | deaminase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006400 | tRNA modification | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009451 | RNA modification | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0016553 | base conversion or substitution editing | No |
| GO:0004000 | adenosine deaminase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006382 | adenosine to inosine editing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 31.07 | 14.71 | 47.43 |
| CcL | In ants, during behavior modification | 129.82 | 70.23 | 189.41 |
| CcD | In ants, recently dead | 69.85 | 37.55 | 102.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000997 | yes |
| CcL | CcD | 0.004113 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1381 MLIGVCGGICSGKKTVARYLVDHHGFKQLHLRDNDDDDDNQSASSNPDTSSPGGSAAFDGALTASALTVRPGASA SSLALGPPAQDSLSFPTADRLLEFVTRRWRDRFVISDLPSEAVVDVFARRPFFLLLSVEAPVLARWRRFRQGRHG GADISLDEFVARSDSHLYDAAGGHQPLISRATVRLLNTSNSLAHLYASLGKLDVTNPDRLRPGWDTYFMALASLA AQRSNCMKRRVGCVLVGKEHGVISTGYNGTPRGLRNCASGGCPRCNDGHGAGVALSTCLCIHAEENALLEAGRER IRAGAVLYCDTCPCLTCSIKICQVGIAEVVYAQGYSMDAAAATVFSQAGVKLRQFTPPHTGLVHLERMELY |
| Coding | >Ophio5|1381 ATGCTCATCGGCGTCTGCGGAGGCATCTGCTCCGGCAAGAAGACGGTGGCGCGGTATCTGGTCGACCACCATGGC TTCAAGCAGCTGCATCTACGCGACAATGACGACGACGACGACAACCAGTCAGCATCTTCGAATCCCGACACCAGC AGCCCCGGCGGCTCGGCTGCCTTTGACGGCGCCTTGACGGCCAGCGCCTTGACGGTCAGGCCCGGCGCCTCTGCG TCTTCCCTGGCGCTGGGCCCGCCCGCACAAGACTCGCTGAGCTTCCCAACGGCCGATAGGCTACTCGAATTCGTG ACGCGTCGGTGGCGAGACCGATTCGTCATCAGCGACCTGCCGTCCGAGGCTGTCGTCGACGTCTTCGCGCGCCGA CCCTTCTTCCTCCTCCTCTCGGTAGAGGCGCCCGTGCTGGCCCGTTGGCGACGCTTCCGACAAGGCCGTCATGGC GGCGCTGATATCAGCCTCGACGAATTTGTGGCCCGCAGCGACTCGCACCTGTACGACGCGGCGGGAGGCCATCAG CCGCTCATATCGCGGGCCACGGTTCGGTTGCTCAACACGTCCAACTCGCTGGCTCATCTGTACGCGTCGCTCGGC AAGTTGGACGTGACGAATCCGGACCGGCTCCGACCCGGATGGGACACGTACTTTATGGCCCTGGCGTCGCTGGCG GCTCAGCGCTCCAATTGCATGAAGCGCCGTGTCGGATGCGTCCTCGTCGGCAAGGAGCACGGCGTCATCAGCACC GGATACAACGGCACGCCGAGGGGCCTCCGCAACTGCGCCTCCGGCGGCTGTCCGCGCTGCAACGACGGCCATGGC GCCGGTGTCGCGCTGTCTACCTGTCTATGCATCCACGCCGAGGAGAATGCGCTACTGGAGGCTGGCAGGGAACGA ATCCGTGCCGGCGCCGTGCTCTACTGCGACACCTGTCCGTGCTTGACGTGCAGTATCAAGATCTGCCAGGTGGGC ATCGCCGAGGTCGTCTACGCCCAGGGTTACAGCATGGACGCCGCCGCCGCCACCGTCTTCAGCCAGGCCGGCGTC AAGTTGCGGCAGTTTACGCCGCCGCATACCGGACTGGTCCATCTGGAAAGGATGGAGCTCTAC |
| Transcript | >Ophio5|1381 ATGCTCATCGGCGTCTGCGGAGGCATCTGCTCCGGCAAGAAGACGGTGGCGCGGTATCTGGTCGACCACCATGGC TTCAAGCAGCTGCATCTACGCGACAATGACGACGACGACGACAACCAGTCAGCATCTTCGAATCCCGACACCAGC AGCCCCGGCGGCTCGGCTGCCTTTGACGGCGCCTTGACGGCCAGCGCCTTGACGGTCAGGCCCGGCGCCTCTGCG TCTTCCCTGGCGCTGGGCCCGCCCGCACAAGACTCGCTGAGCTTCCCAACGGCCGATAGGCTACTCGAATTCGTG ACGCGTCGGTGGCGAGACCGATTCGTCATCAGCGACCTGCCGTCCGAGGCTGTCGTCGACGTCTTCGCGCGCCGA CCCTTCTTCCTCCTCCTCTCGGTAGAGGCGCCCGTGCTGGCCCGTTGGCGACGCTTCCGACAAGGCCGTCATGGC GGCGCTGATATCAGCCTCGACGAATTTGTGGCCCGCAGCGACTCGCACCTGTACGACGCGGCGGGAGGCCATCAG CCGCTCATATCGCGGGCCACGGTTCGGTTGCTCAACACGTCCAACTCGCTGGCTCATCTGTACGCGTCGCTCGGC AAGTTGGACGTGACGAATCCGGACCGGCTCCGACCCGGATGGGACACGTACTTTATGGCCCTGGCGTCGCTGGCG GCTCAGCGCTCCAATTGCATGAAGCGCCGTGTCGGATGCGTCCTCGTCGGCAAGGAGCACGGCGTCATCAGCACC GGATACAACGGCACGCCGAGGGGCCTCCGCAACTGCGCCTCCGGCGGCTGTCCGCGCTGCAACGACGGCCATGGC GCCGGTGTCGCGCTGTCTACCTGTCTATGCATCCACGCCGAGGAGAATGCGCTACTGGAGGCTGGCAGGGAACGA ATCCGTGCCGGCGCCGTGCTCTACTGCGACACCTGTCCGTGCTTGACGTGCAGTATCAAGATCTGCCAGGTGGGC ATCGCCGAGGTCGTCTACGCCCAGGGTTACAGCATGGACGCCGCCGCCGCCACCGTCTTCAGCCAGGCCGGCGTC AAGTTGCGGCAGTTTACGCCGCCGCATACCGGACTGGTCCATCTGGAAAGGATGGAGCTCTACTGA |
| Gene | >Ophio5|1381 ATGCTCATCGGCGTCTGCGGAGGCAGGTTTGAACGCTAAGCGGCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GCACATGCTGAACAACTTCAGGCATCTGCTCCGGCAAGAAGACGGTGGCGCGGTATCTGGTCGACCACCATGGCT TCAAGCAGCTGCATCTACGCGACAATGACGACGACGACGACAACCAGTCAGCATCTTCGAATCCCGACACCAGCA GCCCCGGCGGCTCGGCTGCCTTTGACGGCGCCTTGACGGCCAGCGCCTTGACGGTCAGGCCCGGCGCCTCTGCGT CTTCCCTGGCGCTGGGCCCGCCCGCACAAGACTCGCTGAGCTTCCCAACGGCCGATAGGCTACTCGAATTCGTGA CGCGTCGGTGGCGAGACCGATTCGTCATCAGCGACCTGCCGTCCGAGGCTGTCGTCGACGTCTTCGCGCGCCGAC CCTTCTTCCTCCTCCTCTCGGTAGAGGCGCCCGTGCTGGCCCGTTGGCGACGCTTCCGACAAGGCCGTCATGGCG GCGCTGATATCAGCCTCGACGAATTTGTGGCCCGCAGCGACTCGCACCTGTACGACGCGGCGGGAGGCCATCAGC CGCTCATATCGCGGGCCACGGTTCGGTTGCTCAACACGTCCAACTCGCTGGCTCATCTGTACGCGTCGCTCGGCA AGTTGGACGTGACGAATCCGGACCGGCTCCGACCCGGATGGGACACGTACTTTATGGCCCTGGCGTCGCTGGCGG CTCAGCGCTCCAATTGCATGAAGCGCCGTGTCGGATGCGTCCTCGTCGGCAAGGAGCACGGCGTCATCAGCACCG GATACAACGGCACGCCGAGGGGCCTCCGCAACTGCGCCTCCGGCGGCTGTCCGCGCTGCAACGACGGCCATGGCG CCGGTGTCGCGCTGTCTACCTGTCTATGCATCCACGCCGAGGAGAATGCGCTACTGGAGGCTGGCAGGGAACGAA TCCGTGCCGGCGCCGTGCTCTACTGCGACACCTGTCCGTGCTTGACGTGCAGTATCAAGATCTGCCAGGTGGGCA TCGCCGAGGTCGTCTACGCCCAGGGTTACAGCATGGACGCCGCCGCCGCCACCGTCTTCAGCCAGGCCGGCGTCA AGTTGCGGCAGTTTACGCCGGTGAGTCGATCCGAGCCAAAAAAGGACAAACAAGGTACTGATTTCGGTCACAGCC GCATACCGGACTGGTCCATCTGGAAAGGATGGAGCTCTACTGA |