Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1373
Gene name
Locationscaffold_1461:594..1547
Strand-
Gene length (bp)953
Transcript length (bp)795
Coding sequence length (bp)792
Protein length (aa) 264

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 5862.63 1144.82 10580.40
CcL In ants, during behavior modification 737.81 275.69 1199.92
CcD In ants, recently dead 1258.58 484.71 2032.44

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.074953 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1373
MKSTVALSLLAAATAQATNGYSNEVDVSGPAFLNSAYNAKAGEDFNVKFKGCSSGCTITVKEGQAGNLQNTPISF
DVSGSESTIKIPADAPNGRVALEIKDKNGNINYSPQFEFNGGNSNSNTNNDNNKPVPVPAPAATESAARDSTVQP
AREAPTESAARESTNESAVREATTTAATTTTANTGSNADSDTTTTTATSSEATRDVSSSTLSSGTRNASRTTSSS
TSTRTSTSTSTRIPGDSGVGRNAVPWVMSGAMAALALFN
Coding >Ophio5|1373
ATGAAGTCCACTGTCGCCCTCTCCCTCCTGGCTGCGGCCACGGCCCAGGCCACCAACGGGTACAGCAACGAAGTC
GACGTCAGCGGCCCTGCCTTCCTCAACAGTGCCTACAACGCCAAAGCCGGCGAGGATTTCAACGTCAAGTTCAAG
GGCTGCTCTAGCGGCTGCACCATCACCGTCAAGGAGGGCCAGGCCGGTAACCTCCAGAACACGCCCATTTCCTTC
GACGTCAGCGGCTCGGAATCTACCATCAAGATCCCCGCCGACGCGCCTAACGGCAGAGTCGCGTTGGAGATTAAG
GATAAGAACGGCAATATCAACTACAGCCCGCAGTTTGAATTTAATGGCGGCAACTCCAACTCGAACACCAACAAC
GACAACAACAAGCCCGTCCCCGTCCCGGCCCCGGCCGCTACCGAATCGGCCGCTCGCGACTCGACCGTCCAACCC
GCCCGCGAGGCTCCCACCGAGTCCGCCGCTCGCGAGTCTACCAACGAGTCGGCCGTTCGCGAGGCTACCACGACG
GCCGCTACCACCACCACCGCCAACACTGGTTCCAACGCCGACAGCGACACCACCACCACGACGGCCACGTCCTCC
GAGGCCACCCGGGACGTGTCCTCGTCGACGCTGAGCTCCGGCACCCGCAACGCCTCCCGCACTACCAGCTCCTCT
ACGTCGACCCGCACGTCTACTTCTACGTCGACCCGCATCCCCGGTGACTCGGGCGTTGGCCGCAATGCCGTCCCT
TGGGTCATGTCCGGTGCCATGGCCGCCCTCGCCCTCTTCAAC
Transcript >Ophio5|1373
ATGAAGTCCACTGTCGCCCTCTCCCTCCTGGCTGCGGCCACGGCCCAGGCCACCAACGGGTACAGCAACGAAGTC
GACGTCAGCGGCCCTGCCTTCCTCAACAGTGCCTACAACGCCAAAGCCGGCGAGGATTTCAACGTCAAGTTCAAG
GGCTGCTCTAGCGGCTGCACCATCACCGTCAAGGAGGGCCAGGCCGGTAACCTCCAGAACACGCCCATTTCCTTC
GACGTCAGCGGCTCGGAATCTACCATCAAGATCCCCGCCGACGCGCCTAACGGCAGAGTCGCGTTGGAGATTAAG
GATAAGAACGGCAATATCAACTACAGCCCGCAGTTTGAATTTAATGGCGGCAACTCCAACTCGAACACCAACAAC
GACAACAACAAGCCCGTCCCCGTCCCGGCCCCGGCCGCTACCGAATCGGCCGCTCGCGACTCGACCGTCCAACCC
GCCCGCGAGGCTCCCACCGAGTCCGCCGCTCGCGAGTCTACCAACGAGTCGGCCGTTCGCGAGGCTACCACGACG
GCCGCTACCACCACCACCGCCAACACTGGTTCCAACGCCGACAGCGACACCACCACCACGACGGCCACGTCCTCC
GAGGCCACCCGGGACGTGTCCTCGTCGACGCTGAGCTCCGGCACCCGCAACGCCTCCCGCACTACCAGCTCCTCT
ACGTCGACCCGCACGTCTACTTCTACGTCGACCCGCATCCCCGGTGACTCGGGCGTTGGCCGCAATGCCGTCCCT
TGGGTCATGTCCGGTGCCATGGCCGCCCTCGCCCTCTTCAACTAG
Gene >Ophio5|1373
ATGAAGTCCACTGTCGCCCTCTCCCTCCTGGCTGCGGCCACGGCCCAGGCCACCAACGGGTACAGCAACGAAGTC
GACGTCAGCGGCCCTGCCTTCCTCAACAGTGCCTACAACGCCAAAGCCGGCGAGGATTTCAACGTCAAGTTCAAG
GGCTGCTCTAGCGGCTGCACCATCACCGTCAAGGAGGGCCAGGCCGGTAACCTCCAGAACACGCCCATTTCCTGT
CAGTCTGCTTTCCCAATTTTTCCTCGTCGTCTCATCTACTGATGTAGGAAGGGGGCCAGTCGACGTCAGCGGCTC
GGAATCTACCATCAAGATCCCCGCCGACGCGCCTAACGGCAGAGTCGCGTTGGAGATTAAGGATAAGAACGGCAA
TATCAACTACAGCCCGCAGTTTGAATTTAATGGCGGCAACTCCAACTCGAACACCAACAACGACAACAACAAGCC
CGTCCCCGTCCCGGCCCCGGCCGCTACCGAATCGGCCGCTCGCGACTCGACCGTCCAACCCGCCCGCGAGGCTCC
CACCGAGTCCGCCGCTCGCGAGTCTACCAACGAGTCGGCCGTTCGCGAGGCTACCACGACGGCCGCTACCACCAC
CACCGCCAACACTGGTTCCAACGCCGACAGCGACACCACCACCACGACGGCCACGTCCTCCGAGGCCACCCGGGA
CGTGTCCTCGTCGACGCTGAGCTCCGGCACCCGCAACGCCTCCCGCACTACCAGCTCCTGTATGTTCTTTTTTTT
TTCGGGTGTTTTGCTTCATCTTTCTTCGAAGCTTTGAAGCTAACCAGGGCGCTTTTTTTTCTTTTTCTTTCTTCG
TCCCAGCTACGTCGACCCGCACGTCTACTTCTACGTCGACCCGCATCCCCGGTGACTCGGGCGTTGGCCGCAATG
CCGTCCCTTGGGTCATGTCCGGTGCCATGGCCGCCCTCGCCCTCTTCAACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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