© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|1361 |
| Gene name | |
| Location | scaffold_1458:694..1462 |
| Strand | - |
| Gene length (bp) | 768 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 4.94 | 0.87 | 9.00 |
| CcL | In ants, during behavior modification | 35.60 | 13.97 | 57.23 |
| CcD | In ants, recently dead | 32.95 | 13.43 | 52.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.833331 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1361 MKSLSVMTTVVVSLLGFGLADKQDSADKQAAADKQYLASADVLAGNRVLADSNSIAAMGASSTSSADEPCGTSLA TKLHDGAHCALFFLPQGIFHPKDPFHFKKCCPFGRKKKEISSVSSSSSSSSGGGGGSFGGFVGGGSGSGFGGGGG SGFGGGGGSGFGGGGGSGFGGGGGSGFGGGGGSGFGEGGGSGFGEGGGSGSGGGGGFNGGGGGSNGRGYTFYSNG YNPGGSNGGGYVYGNRNGNGFSYSFKRFQA |
| Coding | >Ophio5|1361 ATGAAGTCCCTCTCGGTCATGACGACAGTCGTCGTCAGCCTACTAGGCTTCGGCCTGGCAGATAAGCAAGACTCG GCCGACAAGCAAGCGGCGGCCGACAAGCAATACCTGGCCTCGGCCGATGTCCTCGCCGGCAATCGAGTGTTGGCC GACAGCAACTCCATCGCGGCCATGGGGGCCAGCAGCACCTCGTCGGCAGACGAACCCTGCGGCACCAGTCTCGCC ACCAAGCTGCACGATGGAGCGCATTGCGCCCTGTTCTTTCTCCCGCAGGGCATCTTCCATCCCAAGGACCCCTTT CACTTTAAGAAGTGCTGTCCGTTTGGTAGGAAGAAGAAGGAAATCTCTTCCGTTTCTTCCAGCAGCAGTTCTAGC AGTGGTGGTGGTGGCGGGAGCTTCGGCGGCTTCGTCGGCGGCGGTTCCGGCTCCGGCTTCGGGGGAGGCGGCGGT TCCGGCTTCGGAGGAGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCC GGCTTCGGAGGCGGTGGCGGTTCCGGCTTTGGAGAAGGTGGCGGCTCCGGCTTCGGAGAAGGTGGCGGCTCGGGT TCCGGCGGCGGCGGCGGCTTCAACGGCGGCGGCGGCGGCTCCAACGGTAGAGGCTACACCTTTTACTCCAACGGC TACAACCCCGGTGGTTCCAACGGCGGCGGCTACGTCTACGGAAACAGGAACGGCAACGGCTTCTCCTACTCCTTC AAGAGGTTCCAAGCT |
| Transcript | >Ophio5|1361 ATGAAGTCCCTCTCGGTCATGACGACAGTCGTCGTCAGCCTACTAGGCTTCGGCCTGGCAGATAAGCAAGACTCG GCCGACAAGCAAGCGGCGGCCGACAAGCAATACCTGGCCTCGGCCGATGTCCTCGCCGGCAATCGAGTGTTGGCC GACAGCAACTCCATCGCGGCCATGGGGGCCAGCAGCACCTCGTCGGCAGACGAACCCTGCGGCACCAGTCTCGCC ACCAAGCTGCACGATGGAGCGCATTGCGCCCTGTTCTTTCTCCCGCAGGGCATCTTCCATCCCAAGGACCCCTTT CACTTTAAGAAGTGCTGTCCGTTTGGTAGGAAGAAGAAGGAAATCTCTTCCGTTTCTTCCAGCAGCAGTTCTAGC AGTGGTGGTGGTGGCGGGAGCTTCGGCGGCTTCGTCGGCGGCGGTTCCGGCTCCGGCTTCGGGGGAGGCGGCGGT TCCGGCTTCGGAGGAGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCC GGCTTCGGAGGCGGTGGCGGTTCCGGCTTTGGAGAAGGTGGCGGCTCCGGCTTCGGAGAAGGTGGCGGCTCGGGT TCCGGCGGCGGCGGCGGCTTCAACGGCGGCGGCGGCGGCTCCAACGGTAGAGGCTACACCTTTTACTCCAACGGC TACAACCCCGGTGGTTCCAACGGCGGCGGCTACGTCTACGGAAACAGGAACGGCAACGGCTTCTCCTACTCCTTC AAGAGGTTCCAAGCTTGA |
| Gene | >Ophio5|1361 ATGAAGTCCCTCTCGGTCATGACGACAGTCGTCGTCAGCCTACTAGGCTTCGGCCTGGCAGATAAGCAAGACTCG GCCGACAAGCAAGCGGCGGCCGACAAGCAATACCTGGCCTCGGCCGATGTCCTCGCCGGCAATCGAGTGTTGGCC GACAGCAACTCCATCGCGGCCATGGGGGCCAGCAGCACCTCGTCGGCAGACGAACCCTGCGGCACCAGTCTCGCC ACCAAGCTGCACGATGGAGCGCATTGCGCCCTGTTCTTTCTCCCGCAGGGCATCTTCCATCCCAAGGACCCCTTT CACTTTAAGAAGTGCTGTCCGTTTGGTAGGAAGAAGAAGGAAATCTCTTCCGTTTCTTCCAGCAGCAGTTCTAGC AGTGGTGGTGGTGGCGGGAGCTTCGGCGGCTTCGTCGGCGGCGGTTCCGGCTCCGGCTTCGGGGGAGGCGGCGGT TCCGGCTTCGGAGGAGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCCGGCTTCGGAGGCGGTGGCGGTTCC GGCTTCGGAGGCGGTGGCGGTTCCGGCTTTGGAGAAGGTGGCGGCTCCGGCTTCGGAGAAGGTGGCGGCTCGGGT TCCGGCGGCGGCGGCGGCTTCAACGGCGGCGGCGGCGGCTCCAACGGTAGAGGCTACACCTTTTACTCCAACGGC TACAACCCCGGTGGTTCCAACGGCGGCGGCTACGTCTACGGAAACAGGAACGGCAACGGCTTCTCCTACTCCTTC AAGAGGTTCCAAGCTTGA |