© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1349 |
| Gene name | |
| Location | scaffold_145:6500..8531 |
| Strand | + |
| Gene length (bp) | 2031 |
| Transcript length (bp) | 1620 |
| Coding sequence length (bp) | 1617 |
| Protein length (aa) | 539 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00264 | Tyrosinase | Common central domain of tyrosinase | 8.5E-40 | 75 | 318 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92396|TYRO_PODAS | Tyrosinase OS=Podospora anserina GN=TYR PE=2 SV=1 | 27 | 385 | 3.0E-47 |
| sp|P00440|TYRO_NEUCR | Tyrosinase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=T PE=1 SV=5 | 27 | 422 | 2.0E-45 |
| sp|A7BHQ9|TYRO_PHONA | Tyrosinase OS=Pholiota nameko GN=tyr1 PE=1 SV=1 | 58 | 404 | 3.0E-45 |
| sp|Q00024|PPO1_AGABI | Polyphenol oxidase 1 OS=Agaricus bisporus GN=PPO1 PE=2 SV=1 | 32 | 407 | 3.0E-41 |
| sp|C7FF04|PPO3_AGABI | Polyphenol oxidase 3 OS=Agaricus bisporus GN=PPO3 PE=1 SV=1 | 58 | 402 | 3.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92396|TYRO_PODAS | Tyrosinase OS=Podospora anserina GN=TYR PE=2 SV=1 | 27 | 385 | 3.0E-47 |
| sp|P00440|TYRO_NEUCR | Tyrosinase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=T PE=1 SV=5 | 27 | 422 | 2.0E-45 |
| sp|A7BHQ9|TYRO_PHONA | Tyrosinase OS=Pholiota nameko GN=tyr1 PE=1 SV=1 | 58 | 404 | 3.0E-45 |
| sp|Q00024|PPO1_AGABI | Polyphenol oxidase 1 OS=Agaricus bisporus GN=PPO1 PE=2 SV=1 | 32 | 407 | 3.0E-41 |
| sp|C7FF04|PPO3_AGABI | Polyphenol oxidase 3 OS=Agaricus bisporus GN=PPO3 PE=1 SV=1 | 58 | 402 | 3.0E-35 |
| sp|O42713|PPO2_AGABI | Polyphenol oxidase 2 OS=Agaricus bisporus GN=PPO2 PE=2 SV=1 | 58 | 378 | 1.0E-34 |
| sp|Q8J130|TYRO_ASPFU | Tyrosinase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tyr1 PE=3 SV=2 | 27 | 405 | 1.0E-29 |
| sp|C7FF05|PPO4_AGABI | Polyphenol oxidase 4 OS=Agaricus bisporus GN=PPO4 PE=2 SV=1 | 58 | 378 | 2.0E-29 |
| sp|O61363|HCYG_ENTDO | Hemocyanin G-type, units Oda to Odg OS=Enteroctopus dofleini GN=ODHCY PE=1 SV=1 | 42 | 418 | 6.0E-11 |
| sp|P12659|HCYA_ENTDO | Hemocyanin A-type, units Ode to Odg (Fragment) OS=Enteroctopus dofleini PE=2 SV=2 | 106 | 404 | 3.0E-10 |
| sp|O61363|HCYG_ENTDO | Hemocyanin G-type, units Oda to Odg OS=Enteroctopus dofleini GN=ODHCY PE=1 SV=1 | 106 | 404 | 1.0E-09 |
| sp|P81732|HC2C_MEGCR | Hemocyanin 2-c chain OS=Megathura crenulata PE=1 SV=1 | 271 | 439 | 1.0E-08 |
| sp|O61363|HCYG_ENTDO | Hemocyanin G-type, units Oda to Odg OS=Enteroctopus dofleini GN=ODHCY PE=1 SV=1 | 106 | 400 | 1.0E-07 |
| sp|P12659|HCYA_ENTDO | Hemocyanin A-type, units Ode to Odg (Fragment) OS=Enteroctopus dofleini PE=2 SV=2 | 271 | 400 | 1.0E-07 |
| sp|P80960|HCY2A_RAPVE | Hemocyanin type 2 unit a OS=Rapana venosa PE=1 SV=2 | 271 | 381 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2356 | 0.1065 | 0.9264 | 0.0978 | 0.0829 | 0.0284 | 0.383 | 0.2462 | 0.2007 | 0.0179 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999776 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 4.51 | 1.29 | 7.73 |
| CcL | In ants, during behavior modification | 8.56 | 3.15 | 13.97 |
| CcD | In ants, recently dead | 11.02 | 4.47 | 17.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.058681 | no |
| SC16a | CcD | 0.007944 | yes |
| CcL | CcD | 0.442330 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 42 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1349 MLHREAVAFLSLGLALLVLARPDHQPVTGAPVSPHFEGAPLRRDINELSAAGGPQWHLYLLALRAMQLDSDDNPL SYFQLMGIHGAPYIEWNGAGAQVDGDWQGYCPHTEDIFLPWHRPHAALFEQVLVSKAKQIALTYPESVRAEYTRA AETLRSPYWDWARDSRVPPATVPSKVRVNHSSGAFGNSQVGEIELDNPLRTYRFPKAVLDGKYGKFDPFRRPETY RCRTAAGFPADANRRLGRFPIGQFVYDVFTGARSFVEFCRGNGGVISLEQIHDSIHFDAACREHLIEVELAAFDP IFMLHHTQVDRLWAYWQALHPDDGDDVFQEPYIGKARFSTAKSTLITIDSPLTPFFHPSKAFHTTRSVRDIRDFG YSYQGLEWWRRDKNQMRREAARVINSYGAPKRPRTRHFARLRVHVADFGRPCMVNVFIKDRIVTRITNEVWPNPG SVWTGFGLDEFGVDQHDLTNMTIGLQVSKYDGSDVPMEAISQISAEIEVIEVAPPLSVEELQPSRPSRILPASVT LIRGQNGTTFADSL |
| Coding | >Ophio5|1349 ATGCTGCATCGGGAAGCGGTGGCGTTTCTTAGCCTGGGCCTGGCCCTTCTTGTCCTCGCCCGGCCAGACCATCAG CCAGTCACGGGCGCCCCCGTAAGTCCACACTTCGAGGGGGCTCCTCTCAGGAGGGACATCAACGAACTGTCAGCG GCCGGAGGCCCTCAATGGCACCTGTATCTGCTCGCGCTCCGTGCTATGCAGTTGGACAGCGACGACAACCCCTTG TCCTACTTTCAGCTGATGGGTATCCACGGCGCACCGTATATCGAATGGAACGGTGCCGGAGCCCAGGTTGACGGT GACTGGCAAGGTTACTGTCCTCACACCGAAGACATCTTTCTACCATGGCACCGGCCTCACGCTGCACTCTTCGAG CAAGTTCTCGTCAGCAAGGCCAAGCAGATCGCCCTGACGTATCCCGAGAGCGTCAGGGCCGAGTACACACGCGCG GCCGAAACGCTCCGCTCCCCCTACTGGGACTGGGCCCGCGACTCGCGTGTGCCGCCTGCCACCGTCCCCTCCAAG GTCCGCGTCAACCACAGCAGCGGCGCTTTTGGCAACAGCCAGGTGGGCGAGATCGAGCTGGACAACCCCCTGCGC ACTTACCGCTTCCCCAAGGCCGTCCTGGACGGCAAGTATGGCAAGTTTGATCCGTTCCGTAGGCCCGAGACCTAT CGTTGCCGGACAGCCGCTGGATTCCCGGCCGACGCCAACCGGCGGCTGGGCAGGTTCCCGATCGGCCAATTCGTG TACGACGTCTTCACCGGTGCTCGCAGCTTCGTCGAGTTCTGTCGCGGAAACGGCGGCGTCATCAGCCTGGAGCAG ATACATGACTCCATCCACTTCGACGCCGCATGCCGCGAGCACCTCATCGAGGTCGAGCTGGCAGCCTTTGATCCC ATCTTTATGTTGCATCACACCCAGGTGGATCGCCTGTGGGCGTACTGGCAGGCCCTCCACCCAGACGACGGCGAC GACGTCTTCCAGGAGCCCTACATCGGCAAGGCGCGCTTCTCGACGGCCAAGTCGACTCTCATCACCATCGACTCG CCCTTGACGCCCTTCTTCCACCCGTCCAAGGCCTTCCACACCACTCGTTCGGTCCGTGACATCCGCGACTTTGGC TACTCGTATCAAGGCCTCGAGTGGTGGCGCCGTGACAAGAATCAGATGCGACGTGAGGCCGCACGCGTCATCAAC AGCTACGGCGCCCCCAAGCGACCTAGGACCCGGCACTTTGCCCGTCTGCGCGTCCATGTTGCTGATTTCGGTCGC CCCTGCATGGTCAACGTCTTTATAAAGGACCGCATAGTGACGCGCATCACGAACGAGGTGTGGCCCAACCCCGGC AGCGTCTGGACCGGCTTCGGACTGGACGAGTTTGGTGTCGATCAGCATGATCTGACCAACATGACCATCGGCCTC CAGGTCTCCAAATACGACGGCAGTGACGTTCCCATGGAGGCCATCAGCCAGATAAGCGCCGAGATCGAGGTCATC GAGGTTGCGCCGCCCCTGTCCGTTGAAGAGCTCCAGCCGTCACGGCCGTCGCGTATATTGCCGGCCTCGGTGACG TTGATCCGCGGCCAGAATGGCACAACCTTTGCGGATTCGTTG |
| Transcript | >Ophio5|1349 ATGCTGCATCGGGAAGCGGTGGCGTTTCTTAGCCTGGGCCTGGCCCTTCTTGTCCTCGCCCGGCCAGACCATCAG CCAGTCACGGGCGCCCCCGTAAGTCCACACTTCGAGGGGGCTCCTCTCAGGAGGGACATCAACGAACTGTCAGCG GCCGGAGGCCCTCAATGGCACCTGTATCTGCTCGCGCTCCGTGCTATGCAGTTGGACAGCGACGACAACCCCTTG TCCTACTTTCAGCTGATGGGTATCCACGGCGCACCGTATATCGAATGGAACGGTGCCGGAGCCCAGGTTGACGGT GACTGGCAAGGTTACTGTCCTCACACCGAAGACATCTTTCTACCATGGCACCGGCCTCACGCTGCACTCTTCGAG CAAGTTCTCGTCAGCAAGGCCAAGCAGATCGCCCTGACGTATCCCGAGAGCGTCAGGGCCGAGTACACACGCGCG GCCGAAACGCTCCGCTCCCCCTACTGGGACTGGGCCCGCGACTCGCGTGTGCCGCCTGCCACCGTCCCCTCCAAG GTCCGCGTCAACCACAGCAGCGGCGCTTTTGGCAACAGCCAGGTGGGCGAGATCGAGCTGGACAACCCCCTGCGC ACTTACCGCTTCCCCAAGGCCGTCCTGGACGGCAAGTATGGCAAGTTTGATCCGTTCCGTAGGCCCGAGACCTAT CGTTGCCGGACAGCCGCTGGATTCCCGGCCGACGCCAACCGGCGGCTGGGCAGGTTCCCGATCGGCCAATTCGTG TACGACGTCTTCACCGGTGCTCGCAGCTTCGTCGAGTTCTGTCGCGGAAACGGCGGCGTCATCAGCCTGGAGCAG ATACATGACTCCATCCACTTCGACGCCGCATGCCGCGAGCACCTCATCGAGGTCGAGCTGGCAGCCTTTGATCCC ATCTTTATGTTGCATCACACCCAGGTGGATCGCCTGTGGGCGTACTGGCAGGCCCTCCACCCAGACGACGGCGAC GACGTCTTCCAGGAGCCCTACATCGGCAAGGCGCGCTTCTCGACGGCCAAGTCGACTCTCATCACCATCGACTCG CCCTTGACGCCCTTCTTCCACCCGTCCAAGGCCTTCCACACCACTCGTTCGGTCCGTGACATCCGCGACTTTGGC TACTCGTATCAAGGCCTCGAGTGGTGGCGCCGTGACAAGAATCAGATGCGACGTGAGGCCGCACGCGTCATCAAC AGCTACGGCGCCCCCAAGCGACCTAGGACCCGGCACTTTGCCCGTCTGCGCGTCCATGTTGCTGATTTCGGTCGC CCCTGCATGGTCAACGTCTTTATAAAGGACCGCATAGTGACGCGCATCACGAACGAGGTGTGGCCCAACCCCGGC AGCGTCTGGACCGGCTTCGGACTGGACGAGTTTGGTGTCGATCAGCATGATCTGACCAACATGACCATCGGCCTC CAGGTCTCCAAATACGACGGCAGTGACGTTCCCATGGAGGCCATCAGCCAGATAAGCGCCGAGATCGAGGTCATC GAGGTTGCGCCGCCCCTGTCCGTTGAAGAGCTCCAGCCGTCACGGCCGTCGCGTATATTGCCGGCCTCGGTGACG TTGATCCGCGGCCAGAATGGCACAACCTTTGCGGATTCGTTGTAA |
| Gene | >Ophio5|1349 ATGCTGCATCGGGAAGCGGTGGCGTTTCTTAGCCTGGGCCTGGCCCTTCTTGTCCTCGCCCGGCCAGACCATCAG CCAGTCACGGGCGCCCCCGTAAGTCCACACTTCGAGGGGGCTCCTCTCAGGAGGGACATCAACGAACTGTCAGCG GCCGGAGGCCCTCAATGGTGAGCAAAGTCCGTTCGGTTGTTACCTTTTTGCTTATGCTGACATGGCAGGCACCTG TATCTGCTCGCGCTCCGTGCTATGCAGTTGGACAGCGACGACAACCCCTTGTCCTACTTTCAGCTGATGGGTAAG AGCAGGCCCCCCTTCGAGCAAAAGTTCTCGACGTATATAACACATAAGCTGATGCCGCGTTAGGTATCCACGGCG CACCGTATATCGAATGGAACGGTGCCGGAGCCCAGGTTGACGGTGACTGGCAAGGTTACTGTCCTCACACCGTAA GGCCACGTCTCTGCCGCGACGTGTACGCTTGCGAGCTGACGGCGGCGACGACGACGACGTAGGAAGACATCTTTC TACCATGGCACCGGCCTCACGCTGCACTCTTCGAGGTATGTCGTCACAACGAGACCCCGGGAGGTCATCCACTGA CACGTCTCTTGCAGCAAGTTCTCGTCAGCAAGGCCAAGCAGATCGCCCTGACGTATCCCGAGAGCGTCAGGGCCG AGTACACACGCGCGGCCGAAACGCTCCGCTCCCCCTACTGGGACTGGGCCCGCGACTCGCGTGTGCCGCCTGCCA CCGTCCCCTCCAAGGTCCGCGTCAACCACAGCAGCGGCGCTTTTGGCAACAGCCAGGTGGGCGAGATCGAGCTGG ACAACCCCCTGCGCACTTACCGCTTCCCCAAGGCCGTCCTGGACGGCAAGTATGGCAAGTTTGATCCGTTCCGTA GGCCCGAGACCTATCGTTGCCGGACAGCCGCTGGATTCCCGGCCGACGCCAACCGGCGGCTGGGCAGGTTCCCGA TCGGCCAATTCGTGGTGAGTGTCCATATCATCAAGGGAAAAGAACCGAGGACGGGCCGCTGAGAGAAAGTATTGT CGATAGTACGACGTCTTCACCGGTGCTCGCAGCTTCGTCGAGTTCTGTCGCGGAAACGGCGGCGTCATCAGCCTG GAGCAGATACATGACTCCATCCACTTCGACGCCGCATGCCGCGAGCACCTCATCGAGGTCGAGCTGGCAGCCTTT GATCCCATCTTGTGCGTCGTCATCCAGTTCGGGCTCCAAAGCGACGGAAGCTGACAGGCGTCCCAGTATGTTGCA TCACACCCAGGTGGATCGCCTGTGGGCGTACTGGCAGGCCCTCCACCCAGACGACGGCGACGACGTCTTCCAGGA GCCCTACATCGGCAAGGCGCGCTTCTCGACGGCCAAGTCGACTCTCATCACCATCGACTCGCCCTTGACGCCCTT CTTCCACCCGTCCAAGGCCTTCCACACCACTCGTTCGGTCCGTGACATCCGCGACTTTGGCTACTCGTATCAAGG CCTCGAGTGGTGGCGCCGTGACAAGAATCAGATGCGACGTGAGGCCGCACGCGTCATCAACAGCTACGGCGCCCC CAAGCGACCTAGGACCCGGCACTTTGCCCGTCTGCGCGTCCATGTTGCTGATTTCGGTCGCCCCTGCATGGTCAA CGTCTTTATAAAGGACCGCATAGTGACGCGCATCACGAACGAGGTGTGGCCCAACCCCGGCAGCGTCTGGACCGG CTTCGGACTGGACGAGTTTGGTGTCGATCAGCATGATCTGACCAACATGACCATCGGCCTCCAGGTCTCCAAAGT TTGTTCCCCCCTCCTTTGTGCCCCCCCTGGCTAACGACCCCTGTGCAGTACGACGGCAGTGACGTTCCCATGGAG GCCATCAGCCAGATAAGCGCCGAGATCGAGGTCATCGAGGTTGCGCCGCCCCTGTCCGTTGAAGAGCTCCAGCCG TCACGGCCGTCGCGTATATTGCCGGCCTCGGTGACGTTGATCCGCGGCCAGAATGGCACAACCTTTGCGGATTCG TTGTAA |