© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1347 |
| Gene name | |
| Location | scaffold_145:1351..2842 |
| Strand | - |
| Gene length (bp) | 1491 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07993 | NAD_binding_4 | Male sterility protein | 1.9E-57 | 114 | 358 |
| PF00550 | PP-binding | Phosphopantetheine attachment site | 2.1E-08 | 3 | 63 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 3.0E-08 | 112 | 362 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q70LM4|LGRD_BREPA | Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1 | 5 | 410 | 8.0E-62 |
| sp|P37693|HETM_NOSS1 | Polyketide synthase HetM OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetM PE=3 SV=1 | 14 | 480 | 2.0E-58 |
| sp|P40976|LYS2_SCHPO | L-2-aminoadipate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lys1 PE=1 SV=3 | 23 | 379 | 3.0E-46 |
| sp|Q6FMI5|LYS2_CANGA | L-2-aminoadipate reductase large subunit OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LYS2 PE=3 SV=1 | 20 | 367 | 5.0E-43 |
| sp|O74298|LYS2_PENCH | L-2-aminoadipate reductase large subunit OS=Penicillium chrysogenum GN=lys2 PE=3 SV=1 | 1 | 369 | 2.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q70LM4|LGRD_BREPA | Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1 | 5 | 410 | 8.0E-62 |
| sp|P37693|HETM_NOSS1 | Polyketide synthase HetM OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetM PE=3 SV=1 | 14 | 480 | 2.0E-58 |
| sp|P40976|LYS2_SCHPO | L-2-aminoadipate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lys1 PE=1 SV=3 | 23 | 379 | 3.0E-46 |
| sp|Q6FMI5|LYS2_CANGA | L-2-aminoadipate reductase large subunit OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LYS2 PE=3 SV=1 | 20 | 367 | 5.0E-43 |
| sp|O74298|LYS2_PENCH | L-2-aminoadipate reductase large subunit OS=Penicillium chrysogenum GN=lys2 PE=3 SV=1 | 1 | 369 | 2.0E-41 |
| sp|P07702|LYS2_YEAST | L-2-aminoadipate reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYS2 PE=1 SV=2 | 4 | 365 | 3.0E-40 |
| sp|Q75BB3|LYS2_ASHGO | L-2-aminoadipate reductase large subunit OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LYS2 PE=3 SV=2 | 20 | 412 | 8.0E-40 |
| sp|Q12572|LYS2_CANAX | L-2-aminoadipate reductase large subunit OS=Candida albicans GN=LYS2 PE=3 SV=2 | 111 | 365 | 2.0E-38 |
| sp|B0G138|PKS21_DICDI | Probable polyketide synthase 21 OS=Dictyostelium discoideum GN=pks21 PE=3 SV=1 | 102 | 371 | 3.0E-23 |
| sp|Q54T36|PKS19_DICDI | Probable polyketide synthase 19 OS=Dictyostelium discoideum GN=pks19 PE=3 SV=1 | 82 | 371 | 2.0E-20 |
| sp|Q6RKB1|CAR_NOCIO | Carboxylic acid reductase OS=Nocardia iowensis GN=car PE=1 SV=1 | 79 | 422 | 4.0E-20 |
| sp|B2HN69|CAR_MYCMM | Carboxylic acid reductase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=car PE=1 SV=1 | 20 | 422 | 8.0E-18 |
| sp|Q4WAZ9|NRP14_ASPFU | Nonribosomal peptide synthetase 14 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS14 PE=2 SV=2 | 22 | 410 | 2.0E-17 |
| sp|Q54TW0|PKS18_DICDI | Probable polyketide synthase 18 OS=Dictyostelium discoideum GN=pks18 PE=2 SV=1 | 103 | 339 | 1.0E-15 |
| sp|Q54B49|PKS45_DICDI | Probable polyketide synthase 45 OS=Dictyostelium discoideum GN=pks45 PE=3 SV=2 | 112 | 367 | 2.0E-14 |
| sp|O74419|YQ52_SCHPO | Uncharacterized protein C162.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC162.02c PE=2 SV=1 | 107 | 339 | 1.0E-13 |
| sp|Q54B51|PKS44_DICDI | Probable polyketide synthase 44 OS=Dictyostelium discoideum GN=pks44 PE=3 SV=1 | 112 | 367 | 3.0E-13 |
| sp|Q55CN6|PKS3_DICDI | Probable polyketide synthase 3 OS=Dictyostelium discoideum GN=pks3 PE=3 SV=1 | 112 | 370 | 2.0E-12 |
| sp|Q558Y6|PKS14_DICDI | Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14 PE=3 SV=2 | 106 | 339 | 2.0E-12 |
| sp|A1CLY8|CCSA_ASPCL | Polyketide synthase-nonribosomal peptide synthetase OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ccsA PE=3 SV=1 | 1 | 328 | 2.0E-12 |
| sp|Q86AE3|PKS9_DICDI | Probable polyketide synthase 9/36 OS=Dictyostelium discoideum GN=pks9 PE=2 SV=1 | 97 | 355 | 3.0E-11 |
| sp|Q54FP8|PKS32_DICDI | Probable polyketide synthase 32 OS=Dictyostelium discoideum GN=pks32 PE=3 SV=1 | 113 | 339 | 1.0E-09 |
| sp|B0G0Z9|PKS6_DICDI | Probable polyketide synthase 6 OS=Dictyostelium discoideum GN=pks6 PE=3 SV=1 | 105 | 344 | 6.0E-09 |
| sp|A1ZAI3|FACR2_DROME | Putative fatty acyl-CoA reductase CG8303 OS=Drosophila melanogaster GN=CG8303 PE=2 SV=2 | 111 | 359 | 4.0E-08 |
| sp|A1ZAI5|FACR1_DROME | Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | 112 | 312 | 5.0E-08 |
| sp|Q08891|FACR2_ARATH | Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2 | 109 | 232 | 5.0E-07 |
| sp|Q70LM5|LGRC_BREPA | Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1 | 1 | 92 | 4.0E-06 |
| sp|Q70LM5|LGRC_BREPA | Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1 | 1 | 94 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 3.30 | 0.80 | 5.80 |
| CcL | In ants, during behavior modification | 2.79 | 0.42 | 5.16 |
| CcD | In ants, recently dead | 3.73 | 0.95 | 6.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.709006 | no |
| SC16a | CcD | 0.776221 | no |
| CcL | CcD | 0.489007 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1347 MAGLWASILAAPVGGYYDDDDDFISLGGSSLQASLLVSQIRQTFGLEVPLLTLYRDFSLGAVSAVVAKGLEGSVP AAPDERERWVADSLIGDHLPAPTGPVIDWRRPDEGRVFVTGATGFVGAFLLADLMRHQHVSRVCCLVRAANGEEG LERLRTGMGKYKLWDEAFAGRLDVVTGRLEDEHLGMGAQQFEAMARWSSVVFHLGARVNYTQPYALHRDANTLGT VNVVRFSTAGHRLKPLHYVSSISCFGPTGLVTGATTVREDEPLLRHLDALPLDHGYAQSQWVAEQLVGRLISRGF PIAVYRPGFVTGHSRSGACNRDDFVSRLIEACCEMGCYPLLPNQRKEFVPVDYVTAAILHIAASPTCAGKAYHIV PPSRDASVDMDATMQLVGEALQRPLRGVPYSEWVDRLAVVAPLRLLPLQPMLAEKIYSGRTRWELYENMPVYDTS NTDAALADYPGGLELPPLDESLMKRYISFIDEAAREGAAPLSSAVA |
| Coding | >Ophio5|1347 ATGGCCGGACTGTGGGCTTCGATCCTGGCTGCGCCCGTCGGCGGATACTACGACGACGACGACGACTTCATCAGC CTCGGCGGCTCGTCTCTGCAGGCCTCACTTCTCGTCAGCCAGATACGGCAGACGTTTGGGCTCGAGGTTCCGCTC TTGACACTGTATCGCGACTTCAGCCTGGGGGCCGTCTCGGCCGTCGTGGCAAAGGGCCTCGAGGGAAGCGTGCCG GCGGCTCCGGACGAGCGGGAGAGGTGGGTGGCCGATAGCCTCATCGGAGACCATCTTCCGGCGCCGACGGGACCC GTCATCGACTGGCGGCGTCCCGACGAGGGCCGAGTGTTCGTCACGGGGGCGACGGGCTTCGTCGGCGCCTTCTTG CTGGCTGATCTGATGCGTCACCAGCACGTCTCCCGCGTCTGCTGTCTCGTGAGGGCGGCCAATGGCGAAGAGGGC CTCGAACGGCTACGGACCGGTATGGGCAAGTACAAGCTATGGGATGAGGCCTTTGCCGGCCGGCTGGACGTCGTC ACCGGCCGACTGGAAGACGAACATCTCGGCATGGGGGCCCAACAGTTCGAAGCCATGGCGCGCTGGTCCAGCGTC GTCTTCCATCTCGGGGCTCGGGTCAACTACACGCAGCCGTACGCGCTCCATCGGGACGCCAACACGCTGGGTACG GTCAACGTGGTGCGCTTCAGCACGGCCGGCCATCGGCTCAAGCCCCTTCACTACGTCTCGAGCATCTCCTGCTTC GGCCCGACGGGACTGGTGACGGGGGCGACGACGGTTCGCGAGGATGAGCCGCTGCTGCGACATCTCGATGCCCTG CCGCTGGATCACGGCTACGCCCAGAGCCAGTGGGTGGCGGAGCAGCTGGTCGGTCGTCTCATCTCCAGGGGGTTC CCCATCGCCGTCTACCGTCCGGGCTTCGTCACCGGTCACAGCCGCAGCGGGGCCTGCAACCGAGACGACTTCGTC AGTCGTCTGATCGAAGCCTGCTGCGAGATGGGCTGTTACCCCTTGTTACCCAACCAGCGCAAGGAATTCGTCCCC GTCGACTACGTCACCGCCGCCATCCTACACATTGCCGCTTCGCCGACGTGTGCGGGAAAGGCGTACCATATCGTT CCGCCTTCGCGAGACGCTTCCGTCGACATGGACGCCACCATGCAACTCGTCGGCGAAGCCCTTCAACGGCCCTTA CGAGGCGTCCCCTACTCCGAGTGGGTCGACCGTCTCGCCGTCGTCGCGCCCCTGCGCCTCCTCCCCCTGCAACCG ATGCTGGCCGAGAAGATTTACAGCGGACGGACCCGGTGGGAGCTCTACGAGAACATGCCCGTCTACGACACGTCC AATACCGACGCTGCCCTGGCCGACTACCCCGGCGGGCTGGAGTTGCCGCCGCTGGATGAGTCGTTGATGAAGAGG TATATAAGCTTCATTGACGAGGCGGCGAGGGAGGGGGCTGCGCCGCTTTCGTCGGCGGTTGCG |
| Transcript | >Ophio5|1347 ATGGCCGGACTGTGGGCTTCGATCCTGGCTGCGCCCGTCGGCGGATACTACGACGACGACGACGACTTCATCAGC CTCGGCGGCTCGTCTCTGCAGGCCTCACTTCTCGTCAGCCAGATACGGCAGACGTTTGGGCTCGAGGTTCCGCTC TTGACACTGTATCGCGACTTCAGCCTGGGGGCCGTCTCGGCCGTCGTGGCAAAGGGCCTCGAGGGAAGCGTGCCG GCGGCTCCGGACGAGCGGGAGAGGTGGGTGGCCGATAGCCTCATCGGAGACCATCTTCCGGCGCCGACGGGACCC GTCATCGACTGGCGGCGTCCCGACGAGGGCCGAGTGTTCGTCACGGGGGCGACGGGCTTCGTCGGCGCCTTCTTG CTGGCTGATCTGATGCGTCACCAGCACGTCTCCCGCGTCTGCTGTCTCGTGAGGGCGGCCAATGGCGAAGAGGGC CTCGAACGGCTACGGACCGGTATGGGCAAGTACAAGCTATGGGATGAGGCCTTTGCCGGCCGGCTGGACGTCGTC ACCGGCCGACTGGAAGACGAACATCTCGGCATGGGGGCCCAACAGTTCGAAGCCATGGCGCGCTGGTCCAGCGTC GTCTTCCATCTCGGGGCTCGGGTCAACTACACGCAGCCGTACGCGCTCCATCGGGACGCCAACACGCTGGGTACG GTCAACGTGGTGCGCTTCAGCACGGCCGGCCATCGGCTCAAGCCCCTTCACTACGTCTCGAGCATCTCCTGCTTC GGCCCGACGGGACTGGTGACGGGGGCGACGACGGTTCGCGAGGATGAGCCGCTGCTGCGACATCTCGATGCCCTG CCGCTGGATCACGGCTACGCCCAGAGCCAGTGGGTGGCGGAGCAGCTGGTCGGTCGTCTCATCTCCAGGGGGTTC CCCATCGCCGTCTACCGTCCGGGCTTCGTCACCGGTCACAGCCGCAGCGGGGCCTGCAACCGAGACGACTTCGTC AGTCGTCTGATCGAAGCCTGCTGCGAGATGGGCTGTTACCCCTTGTTACCCAACCAGCGCAAGGAATTCGTCCCC GTCGACTACGTCACCGCCGCCATCCTACACATTGCCGCTTCGCCGACGTGTGCGGGAAAGGCGTACCATATCGTT CCGCCTTCGCGAGACGCTTCCGTCGACATGGACGCCACCATGCAACTCGTCGGCGAAGCCCTTCAACGGCCCTTA CGAGGCGTCCCCTACTCCGAGTGGGTCGACCGTCTCGCCGTCGTCGCGCCCCTGCGCCTCCTCCCCCTGCAACCG ATGCTGGCCGAGAAGATTTACAGCGGACGGACCCGGTGGGAGCTCTACGAGAACATGCCCGTCTACGACACGTCC AATACCGACGCTGCCCTGGCCGACTACCCCGGCGGGCTGGAGTTGCCGCCGCTGGATGAGTCGTTGATGAAGAGG TATATAAGCTTCATTGACGAGGCGGCGAGGGAGGGGGCTGCGCCGCTTTCGTCGGCGGTTGCGTAA |
| Gene | >Ophio5|1347 ATGGCCGGACTGTGGGCTTCGATCCTGGCTGCGCCCGTCGGCGGATACTACGACGACGACGACGACTTCATCAGC CTCGGCGGCTCGTCTCTGCAGGCCTCACTTCTCGTCAGCCAGATACGGCAGACGTTTGGGCTCGAGGTTCCGCTC TTGACACTGTATCGCGACTTCAGCCTGGGGGCCGTCTCGGCCGTCGTGGCAAAGGGCCTCGAGGGAAGCGTGCCG GCGGCTCCGGACGAGCGGGAGAGGTGGGTGGCCGATAGCCTCATCGGAGACCATCTTCCGGCGCCGACGGGACCC GTCATCGACTGGCGGCGTCCCGACGAGGGCCGAGTGTTCGTCACGGGGGCGACGGGCTTCGTCGGCGCCTTCTTG CTGGCTGATCTGATGCGTCACCAGCACGTCTCCCGCGTCTGCTGTCTCGTGAGGGCGGCCAATGGCGAAGAGGGC CTCGAACGGCTACGGACCGGTATGGGCAAGTACAAGCTATGGGATGAGGCCTTTGCCGGCCGGCTGGACGTCGTC ACCGGCCGACTGGAAGACGAACATCTCGGCATGGGGGCCCAACAGTTCGAAGCCATGGCGCGCTGGTCCAGCGTC GTCTTCCATCTCGGGGCTCGGGTCAACTACACGCAGCCGTACGCGCTCCATCGGGACGCCAACACGCTGGGTACG GTCAACGTGGTGCGCTTCAGCACGGCCGGCCATCGGCTCAAGCCCCTTCACTACGTCTCGAGCATCTCCTGCTTC GGCCCGACGGGACTGGTGACGGGGGCGACGACGGTTCGCGAGGATGAGCCGCTGCTGCGACATCTCGATGCCCTG CCGCTGGATCACGGCTACGCCCAGAGCCAGTGGGTGGCGGAGCAGCTGGTCGGTCGTCTCATCTCCAGGGGGTTC CCCATCGCCGTCTACCGTCCGGGCTTCGTCACCGGTCACAGCCGCAGCGGGGCCTGCAACCGAGACGACTTCGTC AGTCGTCTGATCGAAGCCTGCTGCGAGATGGGCTGTTACCCCTTGTTACCCAACCAGCGCAAGGAATTCGTCCCC GTCGACTACGTCACCGCCGCCATCCTACACATTGCCGCTTCGCCGACGTGTGCGGGAAAGGCGTACCATATCGTT CCGCCTTCGCGAGACGCTTCCGTCGACATGGACGCCACCATGCAACTCGTCGGCGAAGCCCTTCAACGGCCCTTA CGAGGCGTCCCCTACTCCGAGTGGGTCGACCGTCTCGCCGTCGTCGCGCCCCTGCGCCTCCTCCCCCTGCAACCG ATGCTGGCCGAGAAGATTTACAGCGGACGGACCCGGTGGGAGCTCTACGAGAACATGCCCGTCTACGACACGTCC AATACCGACGCTGCCCTGGCCGACTACCCCGGCGGGCTGGAGTTGCCGCCGCTGGATGAGTCGTTGATGAAGAGG TATATAAGCTTCATTGACGAGGCGGCGAGGGAGGGGGCTGCGCCGCTTTCGTCGGCGGTTGCGTAA |