© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1333 |
| Gene name | |
| Location | scaffold_144:6982..9036 |
| Strand | - |
| Gene length (bp) | 2054 |
| Transcript length (bp) | 1890 |
| Coding sequence length (bp) | 1887 |
| Protein length (aa) | 629 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04825 | Rad21_Rec8_N | N terminus of Rad21 / Rec8 like protein | 1.9E-37 | 1 | 98 |
| PF04824 | Rad21_Rec8 | Conserved region of Rad21 / Rec8 like protein | 7.0E-09 | 544 | 581 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30776|RAD21_SCHPO | Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 | 1 | 213 | 5.0E-32 |
| sp|Q61550|RAD21_MOUSE | Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 | 1 | 177 | 3.0E-29 |
| sp|O93310|RAD21_XENLA | Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 | 1 | 177 | 3.0E-29 |
| sp|O60216|RAD21_HUMAN | Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 | 1 | 177 | 3.0E-29 |
| sp|Q3SWX9|RAD21_BOVIN | Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 | 1 | 177 | 3.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P30776|RAD21_SCHPO | Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1 | 1 | 213 | 5.0E-32 |
| sp|Q61550|RAD21_MOUSE | Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3 | 1 | 177 | 3.0E-29 |
| sp|O93310|RAD21_XENLA | Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1 | 1 | 177 | 3.0E-29 |
| sp|O60216|RAD21_HUMAN | Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2 | 1 | 177 | 3.0E-29 |
| sp|Q3SWX9|RAD21_BOVIN | Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1 | 1 | 177 | 3.0E-29 |
| sp|Q8W1Y0|SSC14_ARATH | Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1 | 1 | 125 | 2.0E-27 |
| sp|A2AU37|RD21L_MOUSE | Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2 | 1 | 177 | 3.0E-25 |
| sp|Q9H4I0|RD21L_HUMAN | Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3 | 1 | 171 | 4.0E-25 |
| sp|D2HSB3|RD21L_AILME | Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1 | 1 | 120 | 4.0E-25 |
| sp|Q19325|SCC1_CAEEL | Sister chromatid cohesion protein 1 OS=Caenorhabditis elegans GN=scc-1 PE=1 SV=1 | 1 | 164 | 6.0E-22 |
| sp|Q9FQ19|SCC13_ARATH | Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2 | 1 | 124 | 4.0E-17 |
| sp|Q9FQ20|SCC12_ARATH | Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2 | 1 | 87 | 4.0E-15 |
| sp|Q9S7T7|SCC11_ARATH | Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2 | 6 | 114 | 1.0E-11 |
| sp|Q12158|SCC1_YEAST | Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1 | 7 | 226 | 8.0E-11 |
| sp|O95072|REC8_HUMAN | Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8 PE=1 SV=1 | 1 | 111 | 4.0E-07 |
| sp|Q6AYJ4|REC8_RAT | Meiotic recombination protein REC8 homolog OS=Rattus norvegicus GN=Rec8 PE=1 SV=1 | 1 | 111 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1333 MFYSETLLNNNGPLARVWLSANLERKLSKNHVLQSNVTDSVEAIITPNQAPMALRLSSQLLLGVVRIYQRKTRYL LDDCNEAMMKIKMAFRSSGNNDLAANLQMPNREALLLPDKITPYDNLDLPPPPDASWLLSQVDEVTTAPIGRKGR ANNNRDINLQEEFDNSQFLQGSNGLDEDALAPMDDLELELDFGLDMEGGPSQSIEVGRDAPAAPWDVEDDVLSEA DVAPRREPEAVKEDARAHGLGDAAVRIADEEGDIQMGDDDFGFNPGDQSAVPEMTGSADIKRARISESPLSDIDE AFAREVEAEYSRYNHTDLYEPQEEDVENSLVRRPAQRAKKQKMMMPDSEIALSSSHIKQQQADRHNIIKTAAFLP RDPLLLALMDMQKSGGFVSSVMMEGRSSAWAPELRGILCLDLMRGISELKRKRDSGIADVDSDQGAVKSPRLELG DGDDMEFGFGGDALGDQSAAADGTVLEMAAVDEAERGGSASSPIPAFDETTAPVVHPADSGPVSIGTKHAVHILR DLFGAEAATDEDMRKKTSVVFQNLLPEKRTTKAEATKMFFECLVLATKDAIKVEQGPGLGDAIMVRGKRGLWGDW AEREAGGEISNQDEPESAAVSAPAVAVEA |
| Coding | >Ophio5|1333 ATGTTCTACTCGGAGACGCTGCTCAACAACAACGGCCCGCTGGCCCGCGTCTGGCTCTCGGCCAACCTCGAGCGC AAGCTGTCCAAGAACCATGTCCTGCAGTCCAATGTCACCGACAGCGTTGAGGCCATCATCACGCCTAACCAGGCG CCCATGGCCTTGCGCCTCAGCAGTCAGCTGCTACTGGGTGTCGTCAGGATATACCAGCGGAAGACGCGTTACCTG CTCGACGACTGCAATGAGGCCATGATGAAGATTAAGATGGCCTTCCGCTCCAGCGGCAATAACGATCTCGCTGCA AACCTACAAATGCCCAACCGCGAGGCCTTGTTGCTCCCAGATAAGATCACACCCTACGACAACCTCGACCTCCCT CCGCCTCCTGATGCCTCGTGGCTCCTGTCACAGGTCGACGAGGTGACGACGGCCCCAATAGGCCGGAAGGGACGC GCCAACAACAACCGAGACATTAACCTGCAAGAAGAGTTCGACAACAGCCAGTTCCTGCAGGGGAGCAACGGGCTG GATGAGGATGCCCTGGCTCCTATGGACGACCTCGAGCTCGAGCTCGATTTCGGTCTCGACATGGAGGGCGGTCCC AGCCAAAGCATTGAAGTGGGCCGAGACGCGCCCGCCGCCCCGTGGGATGTAGAAGACGACGTGCTAAGCGAAGCA GATGTGGCACCGCGCCGCGAACCCGAAGCTGTCAAGGAAGACGCTCGGGCGCACGGCCTCGGCGACGCCGCCGTC CGCATCGCTGACGAAGAAGGCGACATCCAGATGGGCGACGATGACTTCGGCTTCAACCCCGGCGATCAGTCTGCC GTACCGGAGATGACGGGCTCGGCCGACATAAAACGCGCACGCATATCCGAGTCCCCGCTATCGGACATTGATGAG GCCTTTGCCCGGGAGGTCGAGGCCGAGTATTCGCGCTACAACCACACGGACCTGTACGAGCCGCAGGAGGAAGAC GTCGAGAACTCGCTGGTCCGGCGGCCGGCGCAGCGCGCCAAAAAACAGAAGATGATGATGCCCGACAGCGAGATT GCCCTGTCGAGCAGCCACATTAAACAGCAGCAGGCCGACAGACACAACATCATTAAGACGGCTGCCTTTTTGCCG CGGGATCCGCTTCTGCTGGCTCTGATGGACATGCAAAAGTCGGGCGGCTTCGTGTCGTCGGTCATGATGGAGGGG CGGAGCTCTGCATGGGCTCCCGAGCTAAGAGGAATACTCTGCCTCGACTTGATGCGCGGCATAAGCGAGCTCAAG CGGAAGCGGGACAGCGGCATCGCCGACGTCGATAGCGACCAAGGTGCCGTCAAGTCGCCGCGACTGGAGCTCGGA GACGGAGACGACATGGAGTTCGGCTTTGGCGGCGACGCGCTGGGCGACCAGAGCGCGGCGGCGGACGGAACGGTG CTGGAGATGGCGGCCGTCGACGAGGCCGAGCGCGGCGGGTCGGCGAGCAGCCCGATACCGGCCTTTGACGAAACC ACAGCGCCCGTGGTGCACCCGGCCGACAGCGGGCCGGTCTCGATCGGCACCAAGCACGCGGTGCACATCCTGCGC GACCTCTTTGGCGCCGAGGCGGCGACGGACGAGGACATGAGGAAGAAGACGTCGGTCGTATTTCAGAATCTGTTG CCGGAGAAGCGGACGACCAAGGCGGAGGCGACCAAGATGTTCTTCGAGTGCCTCGTGCTGGCCACCAAGGACGCC ATCAAGGTTGAGCAGGGCCCCGGGCTGGGCGACGCCATCATGGTCAGGGGCAAGCGAGGCCTCTGGGGCGACTGG GCCGAGCGCGAGGCCGGCGGGGAGATATCGAACCAGGACGAGCCCGAGTCGGCAGCCGTCAGCGCGCCGGCCGTT GCCGTGGAGGCG |
| Transcript | >Ophio5|1333 ATGTTCTACTCGGAGACGCTGCTCAACAACAACGGCCCGCTGGCCCGCGTCTGGCTCTCGGCCAACCTCGAGCGC AAGCTGTCCAAGAACCATGTCCTGCAGTCCAATGTCACCGACAGCGTTGAGGCCATCATCACGCCTAACCAGGCG CCCATGGCCTTGCGCCTCAGCAGTCAGCTGCTACTGGGTGTCGTCAGGATATACCAGCGGAAGACGCGTTACCTG CTCGACGACTGCAATGAGGCCATGATGAAGATTAAGATGGCCTTCCGCTCCAGCGGCAATAACGATCTCGCTGCA AACCTACAAATGCCCAACCGCGAGGCCTTGTTGCTCCCAGATAAGATCACACCCTACGACAACCTCGACCTCCCT CCGCCTCCTGATGCCTCGTGGCTCCTGTCACAGGTCGACGAGGTGACGACGGCCCCAATAGGCCGGAAGGGACGC GCCAACAACAACCGAGACATTAACCTGCAAGAAGAGTTCGACAACAGCCAGTTCCTGCAGGGGAGCAACGGGCTG GATGAGGATGCCCTGGCTCCTATGGACGACCTCGAGCTCGAGCTCGATTTCGGTCTCGACATGGAGGGCGGTCCC AGCCAAAGCATTGAAGTGGGCCGAGACGCGCCCGCCGCCCCGTGGGATGTAGAAGACGACGTGCTAAGCGAAGCA GATGTGGCACCGCGCCGCGAACCCGAAGCTGTCAAGGAAGACGCTCGGGCGCACGGCCTCGGCGACGCCGCCGTC CGCATCGCTGACGAAGAAGGCGACATCCAGATGGGCGACGATGACTTCGGCTTCAACCCCGGCGATCAGTCTGCC GTACCGGAGATGACGGGCTCGGCCGACATAAAACGCGCACGCATATCCGAGTCCCCGCTATCGGACATTGATGAG GCCTTTGCCCGGGAGGTCGAGGCCGAGTATTCGCGCTACAACCACACGGACCTGTACGAGCCGCAGGAGGAAGAC GTCGAGAACTCGCTGGTCCGGCGGCCGGCGCAGCGCGCCAAAAAACAGAAGATGATGATGCCCGACAGCGAGATT GCCCTGTCGAGCAGCCACATTAAACAGCAGCAGGCCGACAGACACAACATCATTAAGACGGCTGCCTTTTTGCCG CGGGATCCGCTTCTGCTGGCTCTGATGGACATGCAAAAGTCGGGCGGCTTCGTGTCGTCGGTCATGATGGAGGGG CGGAGCTCTGCATGGGCTCCCGAGCTAAGAGGAATACTCTGCCTCGACTTGATGCGCGGCATAAGCGAGCTCAAG CGGAAGCGGGACAGCGGCATCGCCGACGTCGATAGCGACCAAGGTGCCGTCAAGTCGCCGCGACTGGAGCTCGGA GACGGAGACGACATGGAGTTCGGCTTTGGCGGCGACGCGCTGGGCGACCAGAGCGCGGCGGCGGACGGAACGGTG CTGGAGATGGCGGCCGTCGACGAGGCCGAGCGCGGCGGGTCGGCGAGCAGCCCGATACCGGCCTTTGACGAAACC ACAGCGCCCGTGGTGCACCCGGCCGACAGCGGGCCGGTCTCGATCGGCACCAAGCACGCGGTGCACATCCTGCGC GACCTCTTTGGCGCCGAGGCGGCGACGGACGAGGACATGAGGAAGAAGACGTCGGTCGTATTTCAGAATCTGTTG CCGGAGAAGCGGACGACCAAGGCGGAGGCGACCAAGATGTTCTTCGAGTGCCTCGTGCTGGCCACCAAGGACGCC ATCAAGGTTGAGCAGGGCCCCGGGCTGGGCGACGCCATCATGGTCAGGGGCAAGCGAGGCCTCTGGGGCGACTGG GCCGAGCGCGAGGCCGGCGGGGAGATATCGAACCAGGACGAGCCCGAGTCGGCAGCCGTCAGCGCGCCGGCCGTT GCCGTGGAGGCGTGA |
| Gene | >Ophio5|1333 ATGTTCTACTCGGAGACGCTGCTCAACAACAACGGCCCGCTGGCCCGCGTCTGGCTCTCGGCCAACCTCGAGCGC AAGCTGTCCAAGAACCATGTCCTGCAGTCCAATGTCACCGACAGCGTTGAGGCCATCATCACGCCTAACCAGGCG CCCATGGCCTTGCGCCTCAGCAGTCAGCTGCTACTGGGTGTCGTCAGGATATACCAGCGGAAGACGCGTTACCTG CTCGACGACTGCAATGAGGCCATGATGAAGATTAAGATGGTTCGTGTCCTTTCCCTTCTCGCTTTCATGCTCTCT CTCTCTCTCTCTCTCAACATCACTCCTTGTCATTCATCCCCTTCTTTTCCGTCTCTTCCCTACCCGTCCCCCGTC ATCTCCCTCCTCTCGCGCTCGTCTCCCCTGACCCCTCGGCTCACCATCATTAGGCCTTCCGCTCCAGCGGCAATA ACGATCTCGCTGCAAACCTACAAATGCCCAACCGCGAGGCCTTGTTGCTCCCAGATAAGATCACACCCTACGACA ACCTCGACCTCCCTCCGCCTCCTGATGCCTCGTGGCTCCTGTCACAGGTCGACGAGGTGACGACGGCCCCAATAG GCCGGAAGGGACGCGCCAACAACAACCGAGACATTAACCTGCAAGAAGAGTTCGACAACAGCCAGTTCCTGCAGG GGAGCAACGGGCTGGATGAGGATGCCCTGGCTCCTATGGACGACCTCGAGCTCGAGCTCGATTTCGGTCTCGACA TGGAGGGCGGTCCCAGCCAAAGCATTGAAGTGGGCCGAGACGCGCCCGCCGCCCCGTGGGATGTAGAAGACGACG TGCTAAGCGAAGCAGATGTGGCACCGCGCCGCGAACCCGAAGCTGTCAAGGAAGACGCTCGGGCGCACGGCCTCG GCGACGCCGCCGTCCGCATCGCTGACGAAGAAGGCGACATCCAGATGGGCGACGATGACTTCGGCTTCAACCCCG GCGATCAGTCTGCCGTACCGGAGATGACGGGCTCGGCCGACATAAAACGCGCACGCATATCCGAGTCCCCGCTAT CGGACATTGATGAGGCCTTTGCCCGGGAGGTCGAGGCCGAGTATTCGCGCTACAACCACACGGACCTGTACGAGC CGCAGGAGGAAGACGTCGAGAACTCGCTGGTCCGGCGGCCGGCGCAGCGCGCCAAAAAACAGAAGATGATGATGC CCGACAGCGAGATTGCCCTGTCGAGCAGCCACATTAAACAGCAGCAGGCCGACAGACACAACATCATTAAGACGG CTGCCTTTTTGCCGCGGGATCCGCTTCTGCTGGCTCTGATGGACATGCAAAAGTCGGGCGGCTTCGTGTCGTCGG TCATGATGGAGGGGCGGAGCTCTGCATGGGCTCCCGAGCTAAGAGGAATACTCTGCCTCGACTTGATGCGCGGCA TAAGCGAGCTCAAGCGGAAGCGGGACAGCGGCATCGCCGACGTCGATAGCGACCAAGGTGCCGTCAAGTCGCCGC GACTGGAGCTCGGAGACGGAGACGACATGGAGTTCGGCTTTGGCGGCGACGCGCTGGGCGACCAGAGCGCGGCGG CGGACGGAACGGTGCTGGAGATGGCGGCCGTCGACGAGGCCGAGCGCGGCGGGTCGGCGAGCAGCCCGATACCGG CCTTTGACGAAACCACAGCGCCCGTGGTGCACCCGGCCGACAGCGGGCCGGTCTCGATCGGCACCAAGCACGCGG TGCACATCCTGCGCGACCTCTTTGGCGCCGAGGCGGCGACGGACGAGGACATGAGGAAGAAGACGTCGGTCGTAT TTCAGAATCTGTTGCCGGAGAAGCGGACGACCAAGGCGGAGGCGACCAAGATGTTCTTCGAGTGCCTCGTGCTGG CCACCAAGGACGCCATCAAGGTTGAGCAGGGCCCCGGGCTGGGCGACGCCATCATGGTCAGGGGCAAGCGAGGCC TCTGGGGCGACTGGGCCGAGCGCGAGGCCGGCGGGGAGATATCGAACCAGGACGAGCCCGAGTCGGCAGCCGTCA GCGCGCCGGCCGTTGCCGTGGAGGCGTGA |