Protein ID | Ophio5|1313 |
Gene name | |
Location | scaffold_143:17294..18413 |
Strand | + |
Gene length (bp) | 1119 |
Transcript length (bp) | 1119 |
Coding sequence length (bp) | 1116 |
Protein length (aa) | 372 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04488 | Gly_transf_sug | Glycosyltransferase sugar-binding region containing DXD motif | 1.6E-06 | 172 | 205 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.1873 | 0.1399 | 0.2368 | 0.2002 | 0.0704 | 0.0094 | 0.5584 | 0.1649 | 0.8287 | 0.0387 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 13 | 32 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 154 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1313 MSPRRTRILRPTALLLLLLLLTIAILIIPLYYHRHYDDRDKSFKAPWSQAKDQQRIFRPQHMVKAPMVQPLESSP PEQANAIPDRAHFVYMMSQPEAELGLEFSQALCVFAARYYWRPRQMFLHTNAVDDAIARARNGQSGKWSRLVLGL PEMTVHRVELPIKADNGVEIRKMEHKSDFVRVKAVRDYGGVYLDFDAHLLRDIRPLLRAGFNAVGGRQANELLVS GSFMAKKSATLVNWWYEEMHRVFDGRWTTHSNELMTRIGTSLVPHAGEMLILDRAALAPGGWSKPDCRTLFQSHD YSHPSWLQDYSDTYVLHAFSPRRFHYRIKGFSDITPRYVLSNRSNFALAVFPVAKYMLDQGLIDVDDSHLGI |
Coding | >Ophio5|1313 ATGTCGCCAAGACGGACCAGAATCCTTCGGCCAACAGCCCTCCTCCTCCTCCTCCTCCTCCTCACCATAGCGATA CTCATCATCCCACTCTATTACCACCGTCACTATGACGACCGAGACAAGTCGTTCAAAGCGCCCTGGTCACAAGCC AAAGACCAGCAACGCATCTTCCGGCCACAACACATGGTGAAGGCACCCATGGTGCAGCCGCTGGAGAGCAGCCCG CCAGAGCAGGCCAACGCGATCCCCGACCGAGCTCACTTCGTCTACATGATGTCTCAGCCAGAGGCCGAGCTTGGG CTCGAATTCAGCCAGGCGCTCTGCGTCTTCGCCGCCCGCTACTACTGGCGTCCGCGTCAGATGTTTCTCCACACC AACGCCGTCGACGACGCCATCGCCCGGGCCCGGAACGGTCAGTCCGGCAAGTGGAGTCGGCTCGTTCTCGGCCTT CCGGAGATGACGGTCCATCGGGTCGAGCTCCCGATCAAGGCCGACAACGGAGTCGAGATCCGCAAAATGGAGCAC AAGTCGGACTTTGTGCGCGTCAAGGCTGTCCGTGACTATGGTGGCGTCTACCTCGACTTTGACGCTCATCTGCTT CGCGACATCCGCCCTTTGCTCCGGGCCGGCTTCAACGCGGTGGGTGGGAGACAGGCAAACGAATTGCTCGTCAGC GGATCTTTCATGGCCAAGAAGAGCGCTACCTTGGTCAATTGGTGGTATGAAGAGATGCATCGTGTCTTCGATGGA CGCTGGACCACGCATAGCAATGAGCTCATGACCCGTATCGGCACCAGCCTCGTCCCCCATGCGGGCGAGATGCTC ATTCTCGACCGCGCTGCCCTGGCGCCGGGTGGCTGGTCCAAGCCTGATTGCCGGACGCTCTTCCAGTCGCATGAC TACAGCCATCCATCTTGGCTTCAAGACTACTCTGACACGTATGTCCTGCACGCCTTTAGCCCGCGCCGCTTCCAC TACCGAATCAAAGGCTTCAGTGACATCACTCCTCGCTATGTCCTCTCCAACCGGAGCAACTTTGCCCTCGCCGTC TTCCCTGTTGCCAAGTATATGCTGGATCAGGGCTTGATTGACGTGGACGACTCTCATCTGGGTATA |
Transcript | >Ophio5|1313 ATGTCGCCAAGACGGACCAGAATCCTTCGGCCAACAGCCCTCCTCCTCCTCCTCCTCCTCCTCACCATAGCGATA CTCATCATCCCACTCTATTACCACCGTCACTATGACGACCGAGACAAGTCGTTCAAAGCGCCCTGGTCACAAGCC AAAGACCAGCAACGCATCTTCCGGCCACAACACATGGTGAAGGCACCCATGGTGCAGCCGCTGGAGAGCAGCCCG CCAGAGCAGGCCAACGCGATCCCCGACCGAGCTCACTTCGTCTACATGATGTCTCAGCCAGAGGCCGAGCTTGGG CTCGAATTCAGCCAGGCGCTCTGCGTCTTCGCCGCCCGCTACTACTGGCGTCCGCGTCAGATGTTTCTCCACACC AACGCCGTCGACGACGCCATCGCCCGGGCCCGGAACGGTCAGTCCGGCAAGTGGAGTCGGCTCGTTCTCGGCCTT CCGGAGATGACGGTCCATCGGGTCGAGCTCCCGATCAAGGCCGACAACGGAGTCGAGATCCGCAAAATGGAGCAC AAGTCGGACTTTGTGCGCGTCAAGGCTGTCCGTGACTATGGTGGCGTCTACCTCGACTTTGACGCTCATCTGCTT CGCGACATCCGCCCTTTGCTCCGGGCCGGCTTCAACGCGGTGGGTGGGAGACAGGCAAACGAATTGCTCGTCAGC GGATCTTTCATGGCCAAGAAGAGCGCTACCTTGGTCAATTGGTGGTATGAAGAGATGCATCGTGTCTTCGATGGA CGCTGGACCACGCATAGCAATGAGCTCATGACCCGTATCGGCACCAGCCTCGTCCCCCATGCGGGCGAGATGCTC ATTCTCGACCGCGCTGCCCTGGCGCCGGGTGGCTGGTCCAAGCCTGATTGCCGGACGCTCTTCCAGTCGCATGAC TACAGCCATCCATCTTGGCTTCAAGACTACTCTGACACGTATGTCCTGCACGCCTTTAGCCCGCGCCGCTTCCAC TACCGAATCAAAGGCTTCAGTGACATCACTCCTCGCTATGTCCTCTCCAACCGGAGCAACTTTGCCCTCGCCGTC TTCCCTGTTGCCAAGTATATGCTGGATCAGGGCTTGATTGACGTGGACGACTCTCATCTGGGTATATGA |
Gene | >Ophio5|1313 ATGTCGCCAAGACGGACCAGAATCCTTCGGCCAACAGCCCTCCTCCTCCTCCTCCTCCTCCTCACCATAGCGATA CTCATCATCCCACTCTATTACCACCGTCACTATGACGACCGAGACAAGTCGTTCAAAGCGCCCTGGTCACAAGCC AAAGACCAGCAACGCATCTTCCGGCCACAACACATGGTGAAGGCACCCATGGTGCAGCCGCTGGAGAGCAGCCCG CCAGAGCAGGCCAACGCGATCCCCGACCGAGCTCACTTCGTCTACATGATGTCTCAGCCAGAGGCCGAGCTTGGG CTCGAATTCAGCCAGGCGCTCTGCGTCTTCGCCGCCCGCTACTACTGGCGTCCGCGTCAGATGTTTCTCCACACC AACGCCGTCGACGACGCCATCGCCCGGGCCCGGAACGGTCAGTCCGGCAAGTGGAGTCGGCTCGTTCTCGGCCTT CCGGAGATGACGGTCCATCGGGTCGAGCTCCCGATCAAGGCCGACAACGGAGTCGAGATCCGCAAAATGGAGCAC AAGTCGGACTTTGTGCGCGTCAAGGCTGTCCGTGACTATGGTGGCGTCTACCTCGACTTTGACGCTCATCTGCTT CGCGACATCCGCCCTTTGCTCCGGGCCGGCTTCAACGCGGTGGGTGGGAGACAGGCAAACGAATTGCTCGTCAGC GGATCTTTCATGGCCAAGAAGAGCGCTACCTTGGTCAATTGGTGGTATGAAGAGATGCATCGTGTCTTCGATGGA CGCTGGACCACGCATAGCAATGAGCTCATGACCCGTATCGGCACCAGCCTCGTCCCCCATGCGGGCGAGATGCTC ATTCTCGACCGCGCTGCCCTGGCGCCGGGTGGCTGGTCCAAGCCTGATTGCCGGACGCTCTTCCAGTCGCATGAC TACAGCCATCCATCTTGGCTTCAAGACTACTCTGACACGTATGTCCTGCACGCCTTTAGCCCGCGCCGCTTCCAC TACCGAATCAAAGGCTTCAGTGACATCACTCCTCGCTATGTCCTCTCCAACCGGAGCAACTTTGCCCTCGCCGTC TTCCCTGTTGCCAAGTATATGCTGGATCAGGGCTTGATTGACGTGGACGACTCTCATCTGGGTATATGA |