Protein ID | Ophio5|1307 |
Gene name | |
Location | scaffold_1423:150..1560 |
Strand | + |
Gene length (bp) | 1410 |
Transcript length (bp) | 1134 |
Coding sequence length (bp) | 1131 |
Protein length (aa) | 377 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08449 | UAA | UAA transporter family | 1.3E-91 | 28 | 335 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74750|YEA4_SCHPO | UDP-N-acetylglucosamine transporter yea4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yea4 PE=3 SV=1 | 26 | 342 | 5.0E-61 |
sp|P40004|YEA4_YEAST | UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA4 PE=1 SV=1 | 28 | 343 | 5.0E-60 |
sp|Q8CIA5|S35B4_MOUSE | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35b4 PE=2 SV=2 | 26 | 356 | 6.0E-58 |
sp|Q95KB4|S35B4_MACFA | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Macaca fascicularis GN=SLC35B4 PE=2 SV=1 | 26 | 334 | 1.0E-57 |
sp|Q5R8M3|S35B4_PONAB | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Pongo abelii GN=SLC35B4 PE=2 SV=1 | 26 | 346 | 3.0E-57 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74750|YEA4_SCHPO | UDP-N-acetylglucosamine transporter yea4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yea4 PE=3 SV=1 | 26 | 342 | 5.0E-61 |
sp|P40004|YEA4_YEAST | UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA4 PE=1 SV=1 | 28 | 343 | 5.0E-60 |
sp|Q8CIA5|S35B4_MOUSE | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35b4 PE=2 SV=2 | 26 | 356 | 6.0E-58 |
sp|Q95KB4|S35B4_MACFA | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Macaca fascicularis GN=SLC35B4 PE=2 SV=1 | 26 | 334 | 1.0E-57 |
sp|Q5R8M3|S35B4_PONAB | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Pongo abelii GN=SLC35B4 PE=2 SV=1 | 26 | 346 | 3.0E-57 |
sp|Q969S0|S35B4_HUMAN | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35B4 PE=1 SV=1 | 26 | 346 | 7.0E-57 |
sp|Q7ZW46|S35B4_DANRE | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Danio rerio GN=slc35b4 PE=2 SV=1 | 28 | 349 | 8.0E-57 |
sp|Q9W429|S35B4_DROME | UDP-xylose and UDP-N-acetylglucosamine transporter OS=Drosophila melanogaster GN=Efr PE=2 SV=1 | 27 | 377 | 4.0E-56 |
sp|Q00974|YEA4_KLULA | UDP-N-acetylglucosamine transporter YEA4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YEA4 PE=3 SV=1 | 29 | 337 | 2.0E-55 |
sp|Q869W7|S35B4_DICDI | UDP-N-acetylglucosamine transporter slc35b4 OS=Dictyostelium discoideum GN=slc35b4 PE=3 SV=2 | 23 | 358 | 3.0E-45 |
GO Term | Description | Terminal node |
---|---|---|
GO:0055085 | transmembrane transport | Yes |
GO:0009987 | cellular process | No |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
GO:0051179 | localization | No |
GO:0008150 | biological_process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 22 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 21 | 43 | 22 |
2 | 53 | 72 | 19 |
3 | 92 | 111 | 19 |
4 | 121 | 138 | 17 |
5 | 145 | 162 | 17 |
6 | 177 | 199 | 22 |
7 | 279 | 298 | 19 |
8 | 318 | 337 | 19 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 212.91 | 111.10 | 314.72 |
CcL | In ants, during behavior modification | 205.03 | 106.88 | 303.18 |
CcD | In ants, recently dead | 177.13 | 94.82 | 259.44 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.900696 | no |
SC16a | CcD | 0.478913 | no |
CcL | CcD | 0.578445 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1307 MVTRTIPANNTHSAVFPFVQSLLLEAAALGLIFGGCCSNVYALEAIISFERSSGMLLTFMQFLFVASTSYIAQFD RTRPPLYIAPAKIPLRHWLVNITLFFSINVLNNHAFSYNISVPLHIILRSGGSITTMLAGYLYGKRYSRVQALAV TLLSFGIALAAWSNDEVKTNQKDSIRPTSTVGLGVLFVAQLLSAALGLHTETIYQQHGPQWRENLFYSHLLSLPL FFPFMPSMSRVLSLMATTETLELKMPPFAAGVGMPVQLAYLTTNVMTQYACIRGVNLLAANASALTVTVVLSVRK LVSLIISIWLFGNKLPNGTLVGAVIVFSSGLLYSVGSGSKPRKITRTEELLNEDQDANKLDHARQGESSVPVNKK QD |
Coding | >Ophio5|1307 ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTCTACGCGCTGGAAGCTATAATCAGCTTCGAG CGGTCGAGCGGGATGCTTCTGACATTCATGCAATTTCTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGAC AGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAAATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTT TTCAGCATTAATGTCCTCAACAACCACGCTTTCAGCTATAACATATCCGTCCCATTGCACATCATTTTACGGTCG GGCGGAAGCATCACCACGATGCTGGCAGGCTATCTATATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTC ACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGGTCTAATGATGAGGTAAAGACCAACCAGAAAGATTCCATA CGACCGACGTCCACCGTCGGTCTCGGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACG GAGACGATTTATCAACAACATGGCCCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTC TTCTTCCCCTTTATGCCATCGATGTCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATG CCGCCTTTTGCTGCGGGCGTGGGAATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCT TGCATCCGCGGCGTGAATCTTCTCGCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAG CTTGTCAGCTTGATTATCAGCATCTGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATA GTCTTCAGCTCCGGGTTACTCTACTCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTC TTGAACGAGGATCAGGATGCTAATAAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAA CAAGAC |
Transcript | >Ophio5|1307 ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTCTACGCGCTGGAAGCTATAATCAGCTTCGAG CGGTCGAGCGGGATGCTTCTGACATTCATGCAATTTCTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGAC AGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAAATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTT TTCAGCATTAATGTCCTCAACAACCACGCTTTCAGCTATAACATATCCGTCCCATTGCACATCATTTTACGGTCG GGCGGAAGCATCACCACGATGCTGGCAGGCTATCTATATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTC ACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGGTCTAATGATGAGGTAAAGACCAACCAGAAAGATTCCATA CGACCGACGTCCACCGTCGGTCTCGGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACG GAGACGATTTATCAACAACATGGCCCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTC TTCTTCCCCTTTATGCCATCGATGTCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATG CCGCCTTTTGCTGCGGGCGTGGGAATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCT TGCATCCGCGGCGTGAATCTTCTCGCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAG CTTGTCAGCTTGATTATCAGCATCTGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATA GTCTTCAGCTCCGGGTTACTCTACTCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTC TTGAACGAGGATCAGGATGCTAATAAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAA CAAGACTAA |
Gene | >Ophio5|1307 ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTAAGGTTTTCAGCGCACCCTTTTACCACAACA CCCTATTATACGGAGTCTGGCTGACGATAGACTTAGGTCTACGCGCTGGAAGCTATAATCAGGTCAGCTGATGGT GTTACTTCATTCTACCTAAGTACATCGGAATTGACCCATGCGAGGGCTCTTGGTGCGAAGCTTCGAGCGGTCGAG CGGTAAACGACCCAATACGCCTCACTGACGACTTGCTGACTTGCACCAGGGATGCTTCTGACATTCATGCAATTT CTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGACAGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAA ATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTTTTCAGCATTAATGTCCTCAACAACCACGCTTTCAGC TATAACATATCCGTCCCATTGCACATCATTTTACGGTCGGGCGGAAGCATCACCACGATGCTGGCAGGCTATCTA TATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTCACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGG TCTAATGATGAGGTAAAGGCTAGTACAAGACTGGATATGAGGCTTCCCAACGCCGACATTCTCAAAGATATTCCG AATGGGTTGTACTGACAAATATTGATGCAGACCAACCAGAAAGATTCCATACGACCGACGTCCACCGTCGGTCTC GGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACGGAGACGATTTATCAACAACATGGC CCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTCTTCTTCCCCTTTATGCCATCGATG TCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATGCCGCCTTTTGCTGCGGGCGTGGGA ATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCTTGCATCCGCGGCGTGAATCTTCTC GCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAGCTTGTCAGCTTGATTATCAGCATC TGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATAGTCTTCAGCTCCGGGTTACTCTAC TCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTCTTGAACGAGGATCAGGATGCTAAT AAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAACAAGACTAA |