Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1307
Gene name
Locationscaffold_1423:150..1560
Strand+
Gene length (bp)1410
Transcript length (bp)1134
Coding sequence length (bp)1131
Protein length (aa) 377

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08449 UAA UAA transporter family 1.3E-91 28 335

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O74750|YEA4_SCHPO UDP-N-acetylglucosamine transporter yea4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yea4 PE=3 SV=1 26 342 5.0E-61
sp|P40004|YEA4_YEAST UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA4 PE=1 SV=1 28 343 5.0E-60
sp|Q8CIA5|S35B4_MOUSE UDP-xylose and UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35b4 PE=2 SV=2 26 356 6.0E-58
sp|Q95KB4|S35B4_MACFA UDP-xylose and UDP-N-acetylglucosamine transporter OS=Macaca fascicularis GN=SLC35B4 PE=2 SV=1 26 334 1.0E-57
sp|Q5R8M3|S35B4_PONAB UDP-xylose and UDP-N-acetylglucosamine transporter OS=Pongo abelii GN=SLC35B4 PE=2 SV=1 26 346 3.0E-57
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74750|YEA4_SCHPO UDP-N-acetylglucosamine transporter yea4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yea4 PE=3 SV=1 26 342 5.0E-61
sp|P40004|YEA4_YEAST UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA4 PE=1 SV=1 28 343 5.0E-60
sp|Q8CIA5|S35B4_MOUSE UDP-xylose and UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35b4 PE=2 SV=2 26 356 6.0E-58
sp|Q95KB4|S35B4_MACFA UDP-xylose and UDP-N-acetylglucosamine transporter OS=Macaca fascicularis GN=SLC35B4 PE=2 SV=1 26 334 1.0E-57
sp|Q5R8M3|S35B4_PONAB UDP-xylose and UDP-N-acetylglucosamine transporter OS=Pongo abelii GN=SLC35B4 PE=2 SV=1 26 346 3.0E-57
sp|Q969S0|S35B4_HUMAN UDP-xylose and UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35B4 PE=1 SV=1 26 346 7.0E-57
sp|Q7ZW46|S35B4_DANRE UDP-xylose and UDP-N-acetylglucosamine transporter OS=Danio rerio GN=slc35b4 PE=2 SV=1 28 349 8.0E-57
sp|Q9W429|S35B4_DROME UDP-xylose and UDP-N-acetylglucosamine transporter OS=Drosophila melanogaster GN=Efr PE=2 SV=1 27 377 4.0E-56
sp|Q00974|YEA4_KLULA UDP-N-acetylglucosamine transporter YEA4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YEA4 PE=3 SV=1 29 337 2.0E-55
sp|Q869W7|S35B4_DICDI UDP-N-acetylglucosamine transporter slc35b4 OS=Dictyostelium discoideum GN=slc35b4 PE=3 SV=2 23 358 3.0E-45
[Show less]

GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 53 72 19
3 92 111 19
4 121 138 17
5 145 162 17
6 177 199 22
7 279 298 19
8 318 337 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 212.91 111.10 314.72
CcL In ants, during behavior modification 205.03 106.88 303.18
CcD In ants, recently dead 177.13 94.82 259.44

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.900696 no
SC16a CcD 0.478913 no
CcL CcD 0.578445 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1307
MVTRTIPANNTHSAVFPFVQSLLLEAAALGLIFGGCCSNVYALEAIISFERSSGMLLTFMQFLFVASTSYIAQFD
RTRPPLYIAPAKIPLRHWLVNITLFFSINVLNNHAFSYNISVPLHIILRSGGSITTMLAGYLYGKRYSRVQALAV
TLLSFGIALAAWSNDEVKTNQKDSIRPTSTVGLGVLFVAQLLSAALGLHTETIYQQHGPQWRENLFYSHLLSLPL
FFPFMPSMSRVLSLMATTETLELKMPPFAAGVGMPVQLAYLTTNVMTQYACIRGVNLLAANASALTVTVVLSVRK
LVSLIISIWLFGNKLPNGTLVGAVIVFSSGLLYSVGSGSKPRKITRTEELLNEDQDANKLDHARQGESSVPVNKK
QD
Coding >Ophio5|1307
ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA
GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTCTACGCGCTGGAAGCTATAATCAGCTTCGAG
CGGTCGAGCGGGATGCTTCTGACATTCATGCAATTTCTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGAC
AGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAAATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTT
TTCAGCATTAATGTCCTCAACAACCACGCTTTCAGCTATAACATATCCGTCCCATTGCACATCATTTTACGGTCG
GGCGGAAGCATCACCACGATGCTGGCAGGCTATCTATATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTC
ACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGGTCTAATGATGAGGTAAAGACCAACCAGAAAGATTCCATA
CGACCGACGTCCACCGTCGGTCTCGGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACG
GAGACGATTTATCAACAACATGGCCCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTC
TTCTTCCCCTTTATGCCATCGATGTCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATG
CCGCCTTTTGCTGCGGGCGTGGGAATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCT
TGCATCCGCGGCGTGAATCTTCTCGCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAG
CTTGTCAGCTTGATTATCAGCATCTGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATA
GTCTTCAGCTCCGGGTTACTCTACTCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTC
TTGAACGAGGATCAGGATGCTAATAAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAA
CAAGAC
Transcript >Ophio5|1307
ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA
GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTCTACGCGCTGGAAGCTATAATCAGCTTCGAG
CGGTCGAGCGGGATGCTTCTGACATTCATGCAATTTCTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGAC
AGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAAATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTT
TTCAGCATTAATGTCCTCAACAACCACGCTTTCAGCTATAACATATCCGTCCCATTGCACATCATTTTACGGTCG
GGCGGAAGCATCACCACGATGCTGGCAGGCTATCTATATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTC
ACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGGTCTAATGATGAGGTAAAGACCAACCAGAAAGATTCCATA
CGACCGACGTCCACCGTCGGTCTCGGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACG
GAGACGATTTATCAACAACATGGCCCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTC
TTCTTCCCCTTTATGCCATCGATGTCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATG
CCGCCTTTTGCTGCGGGCGTGGGAATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCT
TGCATCCGCGGCGTGAATCTTCTCGCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAG
CTTGTCAGCTTGATTATCAGCATCTGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATA
GTCTTCAGCTCCGGGTTACTCTACTCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTC
TTGAACGAGGATCAGGATGCTAATAAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAA
CAAGACTAA
Gene >Ophio5|1307
ATGGTCACCCGCACAATTCCCGCGAACAATACCCATTCTGCCGTGTTCCCTTTCGTCCAATCTTTACTATTGGAA
GCAGCTGCCTTGGGCCTTATTTTCGGAGGTTGCTGCTCAAATGTAAGGTTTTCAGCGCACCCTTTTACCACAACA
CCCTATTATACGGAGTCTGGCTGACGATAGACTTAGGTCTACGCGCTGGAAGCTATAATCAGGTCAGCTGATGGT
GTTACTTCATTCTACCTAAGTACATCGGAATTGACCCATGCGAGGGCTCTTGGTGCGAAGCTTCGAGCGGTCGAG
CGGTAAACGACCCAATACGCCTCACTGACGACTTGCTGACTTGCACCAGGGATGCTTCTGACATTCATGCAATTT
CTCTTCGTGGCCAGCACGAGTTACATTGCGCAGTTTGACAGGACCAGACCGCCTCTCTATATCGCGCCCGCCAAA
ATTCCGTTACGACATTGGCTGGTCAACATCACACTTTTTTTCAGCATTAATGTCCTCAACAACCACGCTTTCAGC
TATAACATATCCGTCCCATTGCACATCATTTTACGGTCGGGCGGAAGCATCACCACGATGCTGGCAGGCTATCTA
TATGGGAAAAGATACTCTCGTGTTCAGGCTCTGGCTGTCACTCTACTGAGTTTCGGAATTGCGTTGGCCGCCTGG
TCTAATGATGAGGTAAAGGCTAGTACAAGACTGGATATGAGGCTTCCCAACGCCGACATTCTCAAAGATATTCCG
AATGGGTTGTACTGACAAATATTGATGCAGACCAACCAGAAAGATTCCATACGACCGACGTCCACCGTCGGTCTC
GGTGTCCTGTTTGTGGCGCAGTTGCTCTCAGCTGCGTTGGGCCTCCACACGGAGACGATTTATCAACAACATGGC
CCGCAGTGGCGAGAGAATCTTTTCTACTCGCACCTCCTTTCGTTGCCCCTCTTCTTCCCCTTTATGCCATCGATG
TCTCGGGTTTTGAGTCTGATGGCTACGACTGAGACGCTTGAACTCAAGATGCCGCCTTTTGCTGCGGGCGTGGGA
ATGCCTGTCCAGCTAGCATATTTGACTACGAACGTGATGACTCAATACGCTTGCATCCGCGGCGTGAATCTTCTC
GCTGCCAACGCCTCAGCGCTCACAGTTACTGTGGTTCTAAGTGTCCGGAAGCTTGTCAGCTTGATTATCAGCATC
TGGCTTTTCGGCAACAAGTTACCCAACGGTACCCTAGTCGGCGCCGTCATAGTCTTCAGCTCCGGGTTACTCTAC
TCGGTGGGATCCGGGTCAAAACCGAGGAAAATTACTAGAACTGAGGAACTCTTGAACGAGGATCAGGATGCTAAT
AAGCTCGACCACGCACGTCAAGGAGAATCGTCCGTACCAGTCAATAAAAAACAAGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail