Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1304
Gene name
Locationscaffold_142:36905..37548
Strand+
Gene length (bp)643
Transcript length (bp)372
Coding sequence length (bp)369
Protein length (aa) 123

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 16.50 3.12 29.88
CcL In ants, during behavior modification 20.71 4.08 37.35
CcD In ants, recently dead 4.83 0.00 10.03

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.609377 no
SC16a CcD 0.014131 yes
CcL CcD 0.005162 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1304
MNLSIIAQYSLMGVAAAGCLANKTDAADAKIKGCTRHGVGLPRGESGMCPSSGEGCEAFCADLYNEHVRNGGSGE
VVGGRSCYYPSDFKGKCKITRPQSGTGGRVTCREGNRAGHSFDCVRGK
Coding >Ophio5|1304
ATGAACCTCTCAATCATCGCTCAGTATTCCTTGATGGGAGTTGCTGCTGCGGGCTGCCTTGCCAACAAGACCGAC
GCTGCCGATGCAAAGATCAAAGGATGCACTCGTCACGGAGTCGGACTACCTCGAGGAGAAAGTGGAATGTGTCCT
TCCAGCGGAGAGGGTTGTGAGGCTTTTTGTGCAGATTTGTACAATGAACATGTTCGAAACGGTGGAAGCGGTGAA
GTGGTTGGAGGACGATCTTGTTACTATCCAAGTGATTTTAAAGGAAAGTGCAAGATCACACGACCACAATCAGGA
ACAGGCGGCCGAGTTACATGTCGAGAAGGAAATCGTGCAGGGCATTCATTTGACTGTGTTAGAGGCAAA
Transcript >Ophio5|1304
ATGAACCTCTCAATCATCGCTCAGTATTCCTTGATGGGAGTTGCTGCTGCGGGCTGCCTTGCCAACAAGACCGAC
GCTGCCGATGCAAAGATCAAAGGATGCACTCGTCACGGAGTCGGACTACCTCGAGGAGAAAGTGGAATGTGTCCT
TCCAGCGGAGAGGGTTGTGAGGCTTTTTGTGCAGATTTGTACAATGAACATGTTCGAAACGGTGGAAGCGGTGAA
GTGGTTGGAGGACGATCTTGTTACTATCCAAGTGATTTTAAAGGAAAGTGCAAGATCACACGACCACAATCAGGA
ACAGGCGGCCGAGTTACATGTCGAGAAGGAAATCGTGCAGGGCATTCATTTGACTGTGTTAGAGGCAAATAA
Gene >Ophio5|1304
ATGAACCTCTCAATCATCGCTCAGTATTCCTTGATGGGAGTTGCTGCTGCGGGCTGCCTTGCCAACAAGACCGAC
GCTGCCGATGCAAAGATCAAAGGATGCACTCGTCACGGAGTCGGACTACCTCGAGGAGAAAGTGGAATGTGTCCT
TCCAGCGGAGAGGGTTGTGAGGCTTTTTGTGCAGATTTGTACAATGAACATGTTCGAAACGGTGGAAGCGGTGAA
GTGGTTGGAGGACGATCTTGTGTAAGTGACTCGTACCGCAACAGCTGAGCCTACCAACAATACGTGCTGACGCGT
GGGGAGCGACATCAGTACTATCCAAGTGATTTTAAAGGAGTAAGCGGCTCATAGGCACCAGGTATGAGAAGGAAC
TCACCTAACCTCTCGGCAGAAGTGCAAGATCACACGACCACAATCAGGAACAGGCGGCCGAGTTACAGTGAGTAC
TTGATTGTTGTCTTATAGCCCGAGTGTGGGCGGATCGCTAACTCCATGAGCGATTATAGTGTCGAGAAGGAAATC
GTGCAGGGCATTCATTTGTGAGTGGTTTCTTAATCTCTAATTCCTTTACCTATCACGTGGTACCCTGAGAACAGG
CTATTAAGACGGACTGCTTCAGGACTGTGTTAGAGGCAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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