Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1296
Gene name
Locationscaffold_142:9088..10298
Strand-
Gene length (bp)1210
Transcript length (bp)1158
Coding sequence length (bp)1155
Protein length (aa) 385

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 3.59 0.73 6.46
CcL In ants, during behavior modification 1.36 0.00 2.74
CcD In ants, recently dead 1.71 0.06 3.36

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.046201 yes
SC16a CcD 0.108091 no
CcL CcD 0.700859 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1296
MKFHQFAFIAATSVLAAPQETAPKRVLYFLDSNPSDASIFAVPMNDDGSLQDANSVVQTKTGGIGAIGRDMNGTV
RVDPLFSQDSIVVKGNQLFTVNAGSNSVSRFFIPETDPLHPMPLGEPVSSGGEFPNSVAFSEKNQMVCVANTGKR
AGVQCFKIPECGSLEQLGEFMPLPVNQTTPPLGPVNTVSDIVFNPSETALFVSIKGDGMGLGYLYAYRVADGNID
PMPVVSRPPELKVDFSLTFLSDESAVMTDAAYGASYLSVAENLTATVSKKIEIPGQGATCWSVYSPASDNVYVLD
VMSPNVTTLDPKSGEIKYVIPGDKRAMGSVDAVADRSSLYVLQASPAIATFEKTGSGVPRLSQYLDLSSLGDRSG
WTGLAVYAAF
Coding >Ophio5|1296
ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG
GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG
CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT
CGCGTCGATCCCCTTTTCTCTCAAGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCC
AACTCCGTCTCGCGCTTCTTCATTCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGC
GGTGGCGAGTTCCCCAACTCGGTGGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGA
GCCGGAGTCCAGTGCTTCAAGATCCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTC
AATCAGACGACGCCGCCCTTGGGTCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTT
TTTGTCAGCATCAAGGGCGACGGCATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGAT
CCGATGCCTGTCGTCTCGCGCCCGCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCC
GTCATGACTGACGCCGCATACGGAGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAG
ATCGAAATCCCCGGCCAGGGCGCCACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGAC
GTCATGTCGCCCAACGTTACGACGTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGG
GCGATGGGCTCGGTCGACGCCGTAGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACC
TTTGAGAAGACTGGCAGTGGCGTGCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGA
TGGACTGGACTGGCTGTTTACGCTGCATTT
Transcript >Ophio5|1296
ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG
GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG
CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT
CGCGTCGATCCCCTTTTCTCTCAAGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCC
AACTCCGTCTCGCGCTTCTTCATTCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGC
GGTGGCGAGTTCCCCAACTCGGTGGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGA
GCCGGAGTCCAGTGCTTCAAGATCCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTC
AATCAGACGACGCCGCCCTTGGGTCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTT
TTTGTCAGCATCAAGGGCGACGGCATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGAT
CCGATGCCTGTCGTCTCGCGCCCGCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCC
GTCATGACTGACGCCGCATACGGAGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAG
ATCGAAATCCCCGGCCAGGGCGCCACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGAC
GTCATGTCGCCCAACGTTACGACGTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGG
GCGATGGGCTCGGTCGACGCCGTAGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACC
TTTGAGAAGACTGGCAGTGGCGTGCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGA
TGGACTGGACTGGCTGTTTACGCTGCATTTTGA
Gene >Ophio5|1296
ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG
GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG
CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT
CGCGTCGGTGAGTCGGCTCACAGCGATACACAAGACTCCAGAGCTGACAACTTCTTCAGATCCCCTTTTCTCTCA
AGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCCAACTCCGTCTCGCGCTTCTTCAT
TCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGCGGTGGCGAGTTCCCCAACTCGGT
GGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGAGCCGGAGTCCAGTGCTTCAAGAT
CCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTCAATCAGACGACGCCGCCCTTGGG
TCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTTTTTGTCAGCATCAAGGGCGACGG
CATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGATCCGATGCCTGTCGTCTCGCGCCC
GCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCCGTCATGACTGACGCCGCATACGG
AGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAGATCGAAATCCCCGGCCAGGGCGC
CACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGACGTCATGTCGCCCAACGTTACGAC
GTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGGGCGATGGGCTCGGTCGACGCCGT
AGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACCTTTGAGAAGACTGGCAGTGGCGT
GCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGATGGACTGGACTGGCTGTTTACGC
TGCATTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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