Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1296
Gene name
Location	scaffold_142:9088..10298
Strand	-
Gene length (bp)	1210
Transcript length (bp)	1158
Coding sequence length (bp)	1155
Protein length (aa)	385

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 17	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	3.59	0.73	6.46
CcL	In ants, during behavior modification	1.36	0.00	2.74
CcD	In ants, recently dead	1.71	0.06	3.36

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.046201	yes
SC16a	CcD	0.108091	no
CcL	CcD	0.700859	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1296 MKFHQFAFIAATSVLAAPQETAPKRVLYFLDSNPSDASIFAVPMNDDGSLQDANSVVQTKTGGIGAIGRDMNGTV RVDPLFSQDSIVVKGNQLFTVNAGSNSVSRFFIPETDPLHPMPLGEPVSSGGEFPNSVAFSEKNQMVCVANTGKR AGVQCFKIPECGSLEQLGEFMPLPVNQTTPPLGPVNTVSDIVFNPSETALFVSIKGDGMGLGYLYAYRVADGNID PMPVVSRPPELKVDFSLTFLSDESAVMTDAAYGASYLSVAENLTATVSKKIEIPGQGATCWSVYSPASDNVYVLD VMSPNVTTLDPKSGEIKYVIPGDKRAMGSVDAVADRSSLYVLQASPAIATFEKTGSGVPRLSQYLDLSSLGDRSG WTGLAVYAAF
Coding	>Ophio5\|1296 ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT CGCGTCGATCCCCTTTTCTCTCAAGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCC AACTCCGTCTCGCGCTTCTTCATTCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGC GGTGGCGAGTTCCCCAACTCGGTGGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGA GCCGGAGTCCAGTGCTTCAAGATCCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTC AATCAGACGACGCCGCCCTTGGGTCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTT TTTGTCAGCATCAAGGGCGACGGCATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGAT CCGATGCCTGTCGTCTCGCGCCCGCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCC GTCATGACTGACGCCGCATACGGAGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAG ATCGAAATCCCCGGCCAGGGCGCCACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGAC GTCATGTCGCCCAACGTTACGACGTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGG GCGATGGGCTCGGTCGACGCCGTAGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACC TTTGAGAAGACTGGCAGTGGCGTGCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGA TGGACTGGACTGGCTGTTTACGCTGCATTT
Transcript	>Ophio5\|1296 ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT CGCGTCGATCCCCTTTTCTCTCAAGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCC AACTCCGTCTCGCGCTTCTTCATTCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGC GGTGGCGAGTTCCCCAACTCGGTGGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGA GCCGGAGTCCAGTGCTTCAAGATCCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTC AATCAGACGACGCCGCCCTTGGGTCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTT TTTGTCAGCATCAAGGGCGACGGCATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGAT CCGATGCCTGTCGTCTCGCGCCCGCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCC GTCATGACTGACGCCGCATACGGAGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAG ATCGAAATCCCCGGCCAGGGCGCCACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGAC GTCATGTCGCCCAACGTTACGACGTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGG GCGATGGGCTCGGTCGACGCCGTAGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACC TTTGAGAAGACTGGCAGTGGCGTGCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGA TGGACTGGACTGGCTGTTTACGCTGCATTTTGA
Gene	>Ophio5\|1296 ATGAAGTTTCACCAATTCGCCTTCATTGCCGCAACGTCGGTACTCGCGGCTCCTCAAGAAACAGCCCCGAAACGG GTGCTTTACTTTCTAGACAGTAATCCCAGCGACGCCTCCATATTCGCTGTGCCGATGAATGACGATGGTTCTCTG CAAGACGCAAATTCAGTCGTGCAGACGAAAACGGGCGGCATCGGGGCCATCGGCCGGGATATGAACGGCACGGTT CGCGTCGGTGAGTCGGCTCACAGCGATACACAAGACTCCAGAGCTGACAACTTCTTCAGATCCCCTTTTCTCTCA AGACTCAATTGTAGTCAAAGGCAACCAACTCTTCACCGTCAACGCCGGCTCCAACTCCGTCTCGCGCTTCTTCAT TCCCGAGACCGACCCTCTACACCCAATGCCTCTAGGCGAGCCCGTATCAAGCGGTGGCGAGTTCCCCAACTCGGT GGCCTTCTCGGAGAAGAACCAGATGGTCTGCGTGGCAAATACGGGCAAGAGAGCCGGAGTCCAGTGCTTCAAGAT CCCGGAATGCGGCAGCCTGGAGCAGCTGGGCGAGTTCATGCCGCTGCCCGTCAATCAGACGACGCCGCCCTTGGG TCCCGTCAATACCGTGTCGGACATTGTCTTCAATCCGTCCGAGACGGCTCTTTTTGTCAGCATCAAGGGCGACGG CATGGGCCTCGGCTATCTGTACGCCTATCGTGTCGCCGATGGCAACATTGATCCGATGCCTGTCGTCTCGCGCCC GCCTGAATTGAAGGTCGACTTTTCTCTAACATTCCTCTCCGACGAGTCTGCCGTCATGACTGACGCCGCATACGG AGCTTCCTATCTCTCTGTTGCCGAGAACTTGACCGCCACCGTCTCGAAGAAGATCGAAATCCCCGGCCAGGGCGC CACCTGCTGGTCTGTCTACTCGCCTGCTTCCGACAACGTCTATGTGCTCGACGTCATGTCGCCCAACGTTACGAC GTTGGACCCAAAGTCTGGGGAGATCAAGTACGTCATTCCCGGGGACAAGAGGGCGATGGGCTCGGTCGACGCCGT AGCGGATCGCTCGTCGTTGTATGTCCTTCAGGCCAGCCCAGCTATTGCCACCTTTGAGAAGACTGGCAGTGGCGT GCCACGCTTGTCGCAATATCTTGATTTGAGTTCTTTGGGGGATAGATCTGGATGGACTGGACTGGCTGTTTACGC TGCATTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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