Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1292
Gene name
Locationscaffold_142:148..695
Strand+
Gene length (bp)547
Transcript length (bp)339
Coding sequence length (bp)336
Protein length (aa) 112

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10247 Romo1 Reactive mitochondrial oxygen species modulator 1 1.0E-27 16 81

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q02889|MGR2_YEAST Protein MGR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGR2 PE=1 SV=1 1 98 7.0E-23
sp|P79082|MGR2_SCHPO Protein mgr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mgr2 PE=2 SV=1 15 85 1.0E-18
sp|Q6NYD1|ROMO1_DANRE Reactive oxygen species modulator 1 OS=Danio rerio GN=romo1 PE=3 SV=1 3 81 9.0E-10
sp|A4QNF3|ROMO1_XENTR Reactive oxygen species modulator 1 OS=Xenopus tropicalis GN=romo1 PE=3 SV=1 11 81 3.0E-09
sp|Q4V7T9|ROMO1_XENLA Reactive oxygen species modulator 1 OS=Xenopus laevis GN=romo1 PE=3 SV=1 11 81 8.0E-09
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Swissprot ID Swissprot Description Start End E-value
sp|Q02889|MGR2_YEAST Protein MGR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGR2 PE=1 SV=1 1 98 7.0E-23
sp|P79082|MGR2_SCHPO Protein mgr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mgr2 PE=2 SV=1 15 85 1.0E-18
sp|Q6NYD1|ROMO1_DANRE Reactive oxygen species modulator 1 OS=Danio rerio GN=romo1 PE=3 SV=1 3 81 9.0E-10
sp|A4QNF3|ROMO1_XENTR Reactive oxygen species modulator 1 OS=Xenopus tropicalis GN=romo1 PE=3 SV=1 11 81 3.0E-09
sp|Q4V7T9|ROMO1_XENLA Reactive oxygen species modulator 1 OS=Xenopus laevis GN=romo1 PE=3 SV=1 11 81 8.0E-09
sp|P60603|ROMO1_MOUSE Reactive oxygen species modulator 1 OS=Mus musculus GN=Romo1 PE=2 SV=1 11 81 2.0E-08
sp|P60602|ROMO1_HUMAN Reactive oxygen species modulator 1 OS=Homo sapiens GN=ROMO1 PE=1 SV=1 11 81 2.0E-08
sp|Q3SZV8|ROMO1_BOVIN Reactive oxygen species modulator 1 OS=Bos taurus GN=ROMO1 PE=3 SV=1 11 81 2.0E-08
sp|A1XQR6|ROMO1_PIG Reactive oxygen species modulator 1 OS=Sus scrofa GN=ROMO1 PE=3 SV=1 11 81 4.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 59 0.5

Transmembrane Domains

Domain # Start End Length
1 23 45 22
2 57 79 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1292
MPPVPAASTGGHHGPSNLDKLKMGAMMGGTVGVIIGFIFGSVNIFRYGAGSQGVMRTLGQYMGASGATFGFFMSI
GSVIRSDADPEKLHELYMRAQHRRPIAVLADSGWRRS
Coding >Ophio5|1292
ATGCCTCCTGTACCGGCTGCCTCCACCGGCGGCCATCACGGCCCTTCCAATCTGGACAAGCTCAAGATGGGCGCC
ATGATGGGCGGAACCGTCGGCGTCATCATTGGCTTTATTTTTGGGAGCGTCAACATCTTCCGATACGGCGCAGGC
TCTCAGGGCGTCATGAGAACACTCGGCCAATACATGGGTGCTTCGGGAGCTACATTCGGCTTCTTTATGTCCATT
GGCAGCGTCATCCGGTCTGACGCCGATCCCGAAAAATTGCACGAGTTGTACATGCGAGCACAACACCGGCGGCCC
ATTGCCGTGCTGGCAGACTCTGGCTGGCGAAGAAGT
Transcript >Ophio5|1292
ATGCCTCCTGTACCGGCTGCCTCCACCGGCGGCCATCACGGCCCTTCCAATCTGGACAAGCTCAAGATGGGCGCC
ATGATGGGCGGAACCGTCGGCGTCATCATTGGCTTTATTTTTGGGAGCGTCAACATCTTCCGATACGGCGCAGGC
TCTCAGGGCGTCATGAGAACACTCGGCCAATACATGGGTGCTTCGGGAGCTACATTCGGCTTCTTTATGTCCATT
GGCAGCGTCATCCGGTCTGACGCCGATCCCGAAAAATTGCACGAGTTGTACATGCGAGCACAACACCGGCGGCCC
ATTGCCGTGCTGGCAGACTCTGGCTGGCGAAGAAGTTGA
Gene >Ophio5|1292
ATGCCTCCTGTACCGGCTGCCTCCACCGGCGGCCATCACGGCCCTTCCAATCTGGACAAGCGTACGTCTGCGCTC
GCCGCCGGCGCCGTATCGCGACACTGACACCAGACCGCAGTCAAGATGGGCGCCATGATGGGCGGAAGTATGCCT
CCATCGAAGCCGTCTCCTCTGTCGAGCACACTACTGACGCCTCGCCAGCCGTCGGCGTCATCATTGGCTTTATTT
TTGGTACCGCGATCACGGCTGACCACAATGGTCCACGCTGACCTGTCGTAGGGAGCGTCAACATCTTCCGATACG
GCGCAGGCTCTCAGGGCGTCATGAGAACACTCGGCCAATACATGGGTGCTTCGGGAGCTACATTCGGGTCCGTCG
CTACTCGAAATTGTCCTTTTCTCCACTGCTGATTGCGCCCAGCTTCTTTATGTCCATTGGCAGCGTCATCCGGTC
TGACGCCGATCCCGAAAAATTGCACGAGTTGTACATGCGAGCACAACACCGGCGGCCCATTGCCGTGCTGGCAGA
CTCTGGCTGGCGAAGAAGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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