© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1250 |
| Gene name | |
| Location | scaffold_140:8926..10520 |
| Strand | + |
| Gene length (bp) | 1594 |
| Transcript length (bp) | 1380 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.1E-17 | 40 | 375 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11551|FUCP_ECOLI | L-fucose-proton symporter OS=Escherichia coli (strain K12) GN=fucP PE=1 SV=3 | 9 | 407 | 7.0E-64 |
| sp|P0C105|GLUP_BRUAB | Glucose/galactose transporter OS=Brucella abortus biovar 1 (strain 9-941) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-59 |
| sp|Q2YIJ8|GLUP_BRUA2 | Glucose/galactose transporter OS=Brucella abortus (strain 2308) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-59 |
| sp|Q8YB48|GLUP_BRUME | Glucose/galactose transporter OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-57 |
| sp|Q9ZK41|GLUP_HELPJ | Putative glucose/galactose transporter OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=gluP PE=3 SV=1 | 38 | 394 | 9.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11551|FUCP_ECOLI | L-fucose-proton symporter OS=Escherichia coli (strain K12) GN=fucP PE=1 SV=3 | 9 | 407 | 7.0E-64 |
| sp|P0C105|GLUP_BRUAB | Glucose/galactose transporter OS=Brucella abortus biovar 1 (strain 9-941) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-59 |
| sp|Q2YIJ8|GLUP_BRUA2 | Glucose/galactose transporter OS=Brucella abortus (strain 2308) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-59 |
| sp|Q8YB48|GLUP_BRUME | Glucose/galactose transporter OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=gluP PE=3 SV=1 | 24 | 407 | 5.0E-57 |
| sp|Q9ZK41|GLUP_HELPJ | Putative glucose/galactose transporter OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=gluP PE=3 SV=1 | 38 | 394 | 9.0E-36 |
| sp|P44776|FUCP_HAEIN | L-fucose permease OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fucP PE=3 SV=1 | 25 | 402 | 1.0E-35 |
| sp|O25788|GLUP_HELPY | Putative glucose/galactose transporter OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=gluP PE=3 SV=1 | 38 | 394 | 4.0E-35 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 51 | 19 |
| 2 | 71 | 93 | 22 |
| 3 | 100 | 119 | 19 |
| 4 | 124 | 146 | 22 |
| 5 | 167 | 189 | 22 |
| 6 | 199 | 221 | 22 |
| 7 | 251 | 273 | 22 |
| 8 | 288 | 310 | 22 |
| 9 | 315 | 332 | 17 |
| 10 | 337 | 359 | 22 |
| 11 | 371 | 393 | 22 |
| 12 | 403 | 425 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1250 MTVACFGLRSLKAADDNGRRTRATELTSRQSLFPIALVTVLFFLWGFSYGLLDTLNKHFQEVLHIDRARSAGLQA AYFGAYPLASVGHAAWILRHFGYRAVFIWGLCLYALGALLAIPALKAQTFGGFCACIFIIGNGLGSLETAANPFI TVCGPSKHAELRINASQAFNGIGSVIAPVLGSYVFFNFSPQKAVDNVQWVYLAIAVFVLCLAAAFCFVSIPEITD DDMAIRDAESSSADTPLSRNYRLFHAAFAQFCYAGSQIAIASFFINYASATRPDTDTAMAAKLFAGAQASFAVGR FIGVALMRFVSPRRVFLAFVSCCVLFLGPSITQRGHVGIVMLYLVFFFESICFPTIVALGMRGLGRHTKRGSGFI IGGVVGGACVPPLTGLVGDRHGDGMAMMVPMLFLVGSWSYAFCVNFVPAYTSVLDPKPLVVDDDELERPPSTEKL QGRHVTTAC |
| Coding | >Ophio5|1250 ATGACCGTCGCCTGTTTCGGCCTCCGCTCGCTCAAAGCTGCCGACGATAATGGACGCCGCACCCGGGCCACCGAG TTGACGTCCCGCCAGTCCCTCTTCCCCATAGCCCTCGTCACCGTCCTCTTCTTCCTCTGGGGCTTCAGCTACGGC CTGCTCGATACGCTCAACAAGCACTTTCAGGAGGTGCTGCACATCGACCGCGCCCGCTCAGCCGGTCTGCAGGCT GCCTACTTTGGCGCCTACCCCCTCGCCTCAGTCGGTCACGCCGCCTGGATCCTTCGTCACTTCGGCTACCGCGCC GTCTTCATCTGGGGCCTTTGCCTCTACGCCCTCGGCGCCCTCCTCGCCATTCCCGCCCTCAAGGCCCAGACCTTT GGCGGCTTCTGCGCCTGCATCTTCATCATCGGTAACGGCCTCGGCTCGCTCGAGACGGCAGCAAACCCCTTCATC ACCGTCTGCGGCCCTTCCAAGCACGCCGAGCTCCGCATCAATGCCTCTCAGGCCTTCAACGGCATCGGCTCCGTC ATCGCCCCTGTTCTCGGCTCCTACGTCTTCTTCAACTTTAGTCCGCAAAAGGCCGTCGACAATGTCCAGTGGGTG TATCTGGCCATTGCCGTCTTTGTGCTGTGCCTTGCCGCCGCGTTTTGCTTTGTTTCCATTCCGGAGATAACTGAT GATGACATGGCCATCCGAGACGCCGAATCCTCCTCCGCCGACACGCCCCTATCCCGTAACTACCGCCTCTTTCAC GCCGCCTTCGCCCAATTCTGCTACGCCGGCTCTCAAATCGCCATCGCCAGCTTCTTCATCAACTACGCCTCGGCA ACGCGGCCCGACACCGACACCGCCATGGCCGCAAAGCTCTTCGCCGGCGCTCAGGCCTCGTTTGCCGTCGGACGC TTCATCGGTGTCGCCCTCATGCGTTTTGTCTCTCCGCGCCGCGTCTTCCTCGCCTTCGTTTCCTGCTGTGTCTTA TTCCTCGGCCCTTCCATCACCCAACGCGGTCATGTCGGCATCGTCATGCTCTATCTCGTCTTCTTCTTCGAGTCC ATCTGCTTCCCGACCATTGTCGCCCTCGGCATGCGTGGCCTTGGCCGCCATACTAAACGCGGCAGCGGCTTCATC ATCGGCGGTGTCGTCGGCGGTGCCTGTGTCCCGCCCCTGACAGGCCTCGTCGGCGATCGGCACGGCGACGGCATG GCCATGATGGTTCCCATGCTCTTCCTTGTCGGCTCCTGGTCCTATGCCTTTTGCGTCAACTTCGTCCCGGCTTAC ACCTCTGTCCTCGACCCTAAGCCTCTTGTCGTCGATGACGATGAGTTGGAACGACCGCCGTCCACCGAGAAGCTC CAAGGCCGCCATGTCACCACGGCGTGC |
| Transcript | >Ophio5|1250 ATGACCGTCGCCTGTTTCGGCCTCCGCTCGCTCAAAGCTGCCGACGATAATGGACGCCGCACCCGGGCCACCGAG TTGACGTCCCGCCAGTCCCTCTTCCCCATAGCCCTCGTCACCGTCCTCTTCTTCCTCTGGGGCTTCAGCTACGGC CTGCTCGATACGCTCAACAAGCACTTTCAGGAGGTGCTGCACATCGACCGCGCCCGCTCAGCCGGTCTGCAGGCT GCCTACTTTGGCGCCTACCCCCTCGCCTCAGTCGGTCACGCCGCCTGGATCCTTCGTCACTTCGGCTACCGCGCC GTCTTCATCTGGGGCCTTTGCCTCTACGCCCTCGGCGCCCTCCTCGCCATTCCCGCCCTCAAGGCCCAGACCTTT GGCGGCTTCTGCGCCTGCATCTTCATCATCGGTAACGGCCTCGGCTCGCTCGAGACGGCAGCAAACCCCTTCATC ACCGTCTGCGGCCCTTCCAAGCACGCCGAGCTCCGCATCAATGCCTCTCAGGCCTTCAACGGCATCGGCTCCGTC ATCGCCCCTGTTCTCGGCTCCTACGTCTTCTTCAACTTTAGTCCGCAAAAGGCCGTCGACAATGTCCAGTGGGTG TATCTGGCCATTGCCGTCTTTGTGCTGTGCCTTGCCGCCGCGTTTTGCTTTGTTTCCATTCCGGAGATAACTGAT GATGACATGGCCATCCGAGACGCCGAATCCTCCTCCGCCGACACGCCCCTATCCCGTAACTACCGCCTCTTTCAC GCCGCCTTCGCCCAATTCTGCTACGCCGGCTCTCAAATCGCCATCGCCAGCTTCTTCATCAACTACGCCTCGGCA ACGCGGCCCGACACCGACACCGCCATGGCCGCAAAGCTCTTCGCCGGCGCTCAGGCCTCGTTTGCCGTCGGACGC TTCATCGGTGTCGCCCTCATGCGTTTTGTCTCTCCGCGCCGCGTCTTCCTCGCCTTCGTTTCCTGCTGTGTCTTA TTCCTCGGCCCTTCCATCACCCAACGCGGTCATGTCGGCATCGTCATGCTCTATCTCGTCTTCTTCTTCGAGTCC ATCTGCTTCCCGACCATTGTCGCCCTCGGCATGCGTGGCCTTGGCCGCCATACTAAACGCGGCAGCGGCTTCATC ATCGGCGGTGTCGTCGGCGGTGCCTGTGTCCCGCCCCTGACAGGCCTCGTCGGCGATCGGCACGGCGACGGCATG GCCATGATGGTTCCCATGCTCTTCCTTGTCGGCTCCTGGTCCTATGCCTTTTGCGTCAACTTCGTCCCGGCTTAC ACCTCTGTCCTCGACCCTAAGCCTCTTGTCGTCGATGACGATGAGTTGGAACGACCGCCGTCCACCGAGAAGCTC CAAGGCCGCCATGTCACCACGGCGTGCTGA |
| Gene | >Ophio5|1250 ATGACCGTCGCCTGTTTCGGCCTCCGCTCGCTCAAAGCTGCCGACGATAATGGACGCCGCACCCGGGCCACCGAG TTGACGTCCCGCCAGTCCCTCTTCCCCATAGCCCTCGTCACCGTCCTCTTCTTCCTCTGGGGCTTCAGCTACGGC CTGCTCGATACGCTCAACAAGCACTTTCAGGAGGTGCTGCACATCGACCGCGCCCGCTCAGCCGGTCTGCAGGCT GCCTACTTTGGGTTCGTCTCTCAACCTTCTTTCTTTCTCTCTCTCTTTTCCTCATTCTCCCGTCTAAATCATCAC ACACAAATCAACCCAGCGCCTACCCCCTCGCCTCAGTCGGTCACGCCGCCTGGATCCTTCGTCACTTCGGCTACC GCGCCGTCTTCATCTGGGGCCTTTGCCTCTACGCCCTCGGCGCCCTCCTCGCCATTCCCGCCCTCAAGGCCCAGA CCTTTGGCGGCTTCTGCGCCTGCATCTTCATCATCGGTAACGGCCTCGGCTCGCTCGAGACGGCAGCAAACCCCT TCATCACCGTCTGCGGCCCTTCCAAGCACGCCGAGCTCCGCATCAATGCCTCTCAGGCCTTCAACGGCATCGGCT CCGTCATCGCCCCTGTTCTCGGCTCCTACGTCTTCTTCAACTTTAGTCCGCAAAAGGCCGTCGACAATGTCCAGT GGGTGTATCTGGCCATTGCCGTCTTTGTGCTGTGCCTTGCCGCCGCGTTTTGCTTTGTTTCCATTCCGGAGATAA CTGATGATGGTCTGTGGTTTTTTTCTTCTTATATATATATACATATGCCTCTTCTCTTCGCATCTTTGTCTTGTC GTCGTCGTCCACCTCCCTTGACTAGTATTCCTCAACCCCTATTTTCCGTACACCACTCACACCCATAGACATGGC CATCCGAGACGCCGAATCCTCCTCCGCCGACACGCCCCTATCCCGTAACTACCGCCTCTTTCACGCCGCCTTCGC CCAATTCTGCTACGCCGGCTCTCAAATCGCCATCGCCAGCTTCTTCATCAACTACGCCTCGGCAACGCGGCCCGA CACCGACACCGCCATGGCCGCAAAGCTCTTCGCCGGCGCTCAGGCCTCGTTTGCCGTCGGACGCTTCATCGGTGT CGCCCTCATGCGTTTTGTCTCTCCGCGCCGCGTCTTCCTCGCCTTCGTTTCCTGCTGTGTCTTATTCCTCGGCCC TTCCATCACCCAACGCGGTCATGTCGGCATCGTCATGCTCTATCTCGTCTTCTTCTTCGAGTCCATCTGCTTCCC GACCATTGTCGCCCTCGGCATGCGTGGCCTTGGCCGCCATACTAAACGCGGCAGCGGCTTCATCATCGGCGGTGT CGTCGGCGGTGCCTGTGTCCCGCCCCTGACAGGCCTCGTCGGCGATCGGCACGGCGACGGCATGGCCATGATGGT TCCCATGCTCTTCCTTGTCGGCTCCTGGTCCTATGCCTTTTGCGTCAACTTCGTCCCGGCTTACACCTCTGTCCT CGACCCTAAGCCTCTTGTCGTCGATGACGATGAGTTGGAACGACCGCCGTCCACCGAGAAGCTCCAAGGCCGCCA TGTCACCACGGCGTGCTGA |