Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1234
Gene name
Locationscaffold_14:69160..71573
Strand+
Gene length (bp)2413
Transcript length (bp)2277
Coding sequence length (bp)2274
Protein length (aa) 758

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02065 Melibiase Melibiase 1.0E-147 318 666
PF16875 Glyco_hydro_36N Glycosyl hydrolase family 36 N-terminal domain 9.7E-80 68 311
PF16874 Glyco_hydro_36C Glycosyl hydrolase family 36 C-terminal domain 6.8E-22 680 755

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92457|AGAL2_HYPJE Alpha-galactosidase 2 OS=Hypocrea jecorina GN=agl2 PE=1 SV=1 49 758 0.0E+00
sp|Q9UUZ4|AGALC_ASPNG Alpha-galactosidase C OS=Aspergillus niger GN=aglC PE=1 SV=1 49 758 0.0E+00
sp|Q2TW69|AGALC_ASPOR Probable alpha-galactosidase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=aglC PE=3 SV=1 49 758 0.0E+00
sp|B8NWY6|AGALC_ASPFN Probable alpha-galactosidase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=aglC PE=3 SV=2 49 758 0.0E+00
sp|Q5AU92|AGALC_EMENI Alpha-galactosidase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aglC PE=1 SV=1 1 758 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|Q92457|AGAL2_HYPJE Alpha-galactosidase 2 OS=Hypocrea jecorina GN=agl2 PE=1 SV=1 49 758 0.0E+00
sp|Q9UUZ4|AGALC_ASPNG Alpha-galactosidase C OS=Aspergillus niger GN=aglC PE=1 SV=1 49 758 0.0E+00
sp|Q2TW69|AGALC_ASPOR Probable alpha-galactosidase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=aglC PE=3 SV=1 49 758 0.0E+00
sp|B8NWY6|AGALC_ASPFN Probable alpha-galactosidase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=aglC PE=3 SV=2 49 758 0.0E+00
sp|Q5AU92|AGALC_EMENI Alpha-galactosidase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aglC PE=1 SV=1 1 758 0.0E+00
sp|Q0CVH2|AGALC_ASPTN Probable alpha-galactosidase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=aglC PE=3 SV=1 49 757 0.0E+00
sp|Q0CEF5|AGALG_ASPTN Probable alpha-galactosidase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=aglG PE=3 SV=1 48 758 0.0E+00
sp|Q5ARP5|AGALG_EMENI Probable alpha-galactosidase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aglG PE=2 SV=1 49 758 0.0E+00
sp|P43467|AGAL1_PEDPE Alpha-galactosidase 1 OS=Pediococcus pentosaceus GN=agaR PE=3 SV=1 49 722 5.0E-153
sp|P27756|AGAL_STRMU Alpha-galactosidase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=aga PE=3 SV=3 62 751 6.0E-134
sp|P43469|AGAL2_PEDPE Alpha-galactosidase 2 OS=Pediococcus pentosaceus GN=agaS PE=3 SV=1 51 757 8.0E-120
sp|P16551|RAFA_ECOLX Alpha-galactosidase OS=Escherichia coli GN=rafA PE=1 SV=1 191 724 2.0E-87
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 31 0.45

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 26.15 13.94 38.37
CcL In ants, during behavior modification 13.83 6.35 21.31
CcD In ants, recently dead 10.39 4.29 16.49

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.008585 yes
SC16a CcD 0.000286 yes
CcL CcD 0.340890 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1234
MHRAMPTSTSLIRGGLVVAVGLLGLATGSAMVVVDDDDDGGGGGGRPRFALNGDNVSYRFHVDGATGDLVSDHFG
APVDGPSIESDAEPIQGWVDVVGRIQRELPDLGRGDFRLPAVQIRQTEGYTVSDFRYHSHQLVEGKPSLKGLPST
FGSDSDVSTLLVHLYDNFSQVAADLSYSVFPRYDAVVRSVSITNRGEGNITVEKLASMSVDMPFGDYDMVELKGD
WAREGMRVRRKVDYGTQGFGSTTGYSSHLHNPFVALVDSTTTESHGEAWGFSLVYTGSFAAEVEKGSQGLTRVVM
GFNPSQLSWPLGPGETLVAPEVVAVFSDAGIGGMSRKFHGLYRKHLMKSKYATQPRPVLLNSWEGLHFDYDAARI
QKLAEQSASLGVKLFVLDDGWFGVRHPRVDEDAGLGDWEANPQRFPDGLEPLIDNITSLRSGPSPSASKLKFGLW
FEPEMVNPNSTLYEKHPDWALHAGPYPRTERRHQLVLNLALPEVQDFIIDSVSRVLGGSRIEYVKWDNNRGIHEM
PSASTAHAYMLGMYRVMEKLTERFPDILWEGCASGGGRFDAGILQYFPQVWTSDDTDALERLHIQFGTSLAYPPS
AMGAHVSAVPNGLTGRTTPVEFRAHVAMMGGSFGLELNPEEMPAEERAKVPDLIKLAERVNPTVVGGNLWRLRLP
GESNWPAALFVSEDGQQAVLFYFQLRAAVNQAWPVLRLQGLDAKARYLLDGNQTVSGATLMNKGVSYRFAGDFGS
RVVILKRQ
Coding >Ophio5|1234
ATGCACCGAGCCATGCCTACGAGCACGTCACTTATCCGAGGCGGCCTCGTCGTGGCCGTCGGCCTATTAGGCCTG
GCGACGGGTTCAGCCATGGTGGTGGTCGACGACGACGACGACGGTGGCGGCGGCGGCGGCCGGCCACGATTCGCG
CTCAACGGCGACAATGTATCGTACCGCTTCCACGTCGACGGCGCGACGGGGGATCTCGTCTCGGATCACTTCGGC
GCGCCCGTCGACGGGCCGTCCATCGAGTCTGACGCGGAGCCTATCCAGGGCTGGGTGGATGTCGTCGGTCGGATA
CAGCGTGAGTTGCCGGACTTGGGTAGGGGGGATTTTCGCCTTCCGGCTGTGCAGATTCGCCAGACCGAGGGCTAT
ACCGTCAGCGATTTCCGCTATCACTCTCACCAATTGGTCGAGGGCAAACCTTCGCTCAAGGGGCTGCCTTCGACT
TTTGGCTCCGACTCGGACGTCTCGACGCTTCTCGTTCACTTGTACGATAACTTCAGTCAGGTCGCTGCCGACCTG
TCGTACTCGGTGTTCCCCCGCTACGATGCCGTAGTCCGCAGCGTCAGCATCACCAACAGAGGCGAGGGAAATATC
ACCGTCGAGAAGCTCGCCAGCATGAGCGTCGACATGCCCTTTGGTGACTACGACATGGTCGAGCTCAAGGGCGAC
TGGGCACGGGAGGGCATGAGAGTTCGCCGCAAGGTCGACTATGGCACCCAAGGCTTCGGGAGTACCACTGGCTAC
TCGTCCCACCTGCACAACCCCTTCGTCGCCCTCGTCGATTCGACCACCACCGAGTCCCACGGCGAGGCGTGGGGC
TTTTCCCTCGTCTACACCGGATCCTTCGCCGCCGAGGTCGAGAAGGGGTCCCAAGGCCTGACCCGCGTCGTCATG
GGCTTCAACCCGTCCCAACTGTCGTGGCCGCTCGGCCCCGGCGAAACGCTCGTAGCGCCCGAGGTCGTCGCCGTA
TTCTCCGACGCCGGCATAGGAGGCATGTCGCGCAAGTTTCATGGCCTGTATCGGAAGCACCTGATGAAGAGCAAG
TATGCCACCCAGCCGCGCCCTGTTCTGCTCAACAGCTGGGAGGGTCTTCACTTTGACTACGACGCGGCCAGGATC
CAGAAGCTTGCCGAGCAGTCGGCAAGTCTCGGCGTCAAGCTGTTCGTGCTCGACGACGGCTGGTTTGGTGTGCGA
CACCCCCGCGTCGACGAAGATGCTGGCCTCGGGGACTGGGAAGCGAATCCGCAGAGGTTTCCCGACGGCCTCGAG
CCGCTGATCGACAACATCACAAGCCTCCGCAGCGGGCCTTCACCGTCGGCTTCCAAGCTCAAGTTCGGCCTGTGG
TTTGAGCCCGAGATGGTCAACCCAAACTCGACACTGTACGAGAAGCATCCGGACTGGGCCCTTCACGCGGGACCT
TATCCTCGCACTGAGAGGCGGCACCAGCTGGTCCTCAACCTGGCGCTGCCCGAGGTACAGGACTTCATCATCGAC
TCCGTGTCGAGGGTGCTTGGAGGGTCGCGCATCGAGTACGTCAAGTGGGATAACAACAGAGGCATCCACGAGATG
CCATCGGCCAGTACGGCTCACGCGTACATGCTTGGCATGTATCGCGTCATGGAGAAGCTCACGGAGCGCTTCCCG
GACATTCTCTGGGAAGGCTGCGCATCGGGCGGAGGCCGCTTCGATGCCGGCATCCTGCAGTACTTCCCGCAAGTG
TGGACGTCAGACGACACAGATGCGCTGGAACGGCTGCACATCCAATTCGGCACCTCGCTGGCCTATCCGCCGTCG
GCCATGGGGGCTCACGTGTCGGCGGTGCCGAACGGGCTGACGGGACGGACGACGCCCGTCGAGTTCCGGGCGCAC
GTAGCCATGATGGGCGGATCCTTTGGCCTGGAGCTTAATCCGGAGGAGATGCCGGCCGAGGAGCGGGCCAAGGTG
CCGGACCTGATCAAGCTCGCCGAGCGAGTCAATCCGACGGTCGTCGGCGGCAACCTCTGGCGGCTCAGGCTGCCA
GGCGAGTCCAACTGGCCGGCGGCGCTCTTCGTGTCCGAGGATGGACAGCAGGCGGTGCTGTTTTACTTCCAGCTG
CGAGCGGCCGTCAACCAAGCGTGGCCGGTGCTTCGGCTCCAGGGGCTGGACGCCAAGGCGCGATACCTGCTGGAC
GGCAACCAGACAGTATCGGGGGCGACGCTCATGAACAAAGGCGTCTCGTACAGGTTCGCGGGGGACTTTGGCAGC
CGAGTCGTCATACTGAAGCGGCAG
Transcript >Ophio5|1234
ATGCACCGAGCCATGCCTACGAGCACGTCACTTATCCGAGGCGGCCTCGTCGTGGCCGTCGGCCTATTAGGCCTG
GCGACGGGTTCAGCCATGGTGGTGGTCGACGACGACGACGACGGTGGCGGCGGCGGCGGCCGGCCACGATTCGCG
CTCAACGGCGACAATGTATCGTACCGCTTCCACGTCGACGGCGCGACGGGGGATCTCGTCTCGGATCACTTCGGC
GCGCCCGTCGACGGGCCGTCCATCGAGTCTGACGCGGAGCCTATCCAGGGCTGGGTGGATGTCGTCGGTCGGATA
CAGCGTGAGTTGCCGGACTTGGGTAGGGGGGATTTTCGCCTTCCGGCTGTGCAGATTCGCCAGACCGAGGGCTAT
ACCGTCAGCGATTTCCGCTATCACTCTCACCAATTGGTCGAGGGCAAACCTTCGCTCAAGGGGCTGCCTTCGACT
TTTGGCTCCGACTCGGACGTCTCGACGCTTCTCGTTCACTTGTACGATAACTTCAGTCAGGTCGCTGCCGACCTG
TCGTACTCGGTGTTCCCCCGCTACGATGCCGTAGTCCGCAGCGTCAGCATCACCAACAGAGGCGAGGGAAATATC
ACCGTCGAGAAGCTCGCCAGCATGAGCGTCGACATGCCCTTTGGTGACTACGACATGGTCGAGCTCAAGGGCGAC
TGGGCACGGGAGGGCATGAGAGTTCGCCGCAAGGTCGACTATGGCACCCAAGGCTTCGGGAGTACCACTGGCTAC
TCGTCCCACCTGCACAACCCCTTCGTCGCCCTCGTCGATTCGACCACCACCGAGTCCCACGGCGAGGCGTGGGGC
TTTTCCCTCGTCTACACCGGATCCTTCGCCGCCGAGGTCGAGAAGGGGTCCCAAGGCCTGACCCGCGTCGTCATG
GGCTTCAACCCGTCCCAACTGTCGTGGCCGCTCGGCCCCGGCGAAACGCTCGTAGCGCCCGAGGTCGTCGCCGTA
TTCTCCGACGCCGGCATAGGAGGCATGTCGCGCAAGTTTCATGGCCTGTATCGGAAGCACCTGATGAAGAGCAAG
TATGCCACCCAGCCGCGCCCTGTTCTGCTCAACAGCTGGGAGGGTCTTCACTTTGACTACGACGCGGCCAGGATC
CAGAAGCTTGCCGAGCAGTCGGCAAGTCTCGGCGTCAAGCTGTTCGTGCTCGACGACGGCTGGTTTGGTGTGCGA
CACCCCCGCGTCGACGAAGATGCTGGCCTCGGGGACTGGGAAGCGAATCCGCAGAGGTTTCCCGACGGCCTCGAG
CCGCTGATCGACAACATCACAAGCCTCCGCAGCGGGCCTTCACCGTCGGCTTCCAAGCTCAAGTTCGGCCTGTGG
TTTGAGCCCGAGATGGTCAACCCAAACTCGACACTGTACGAGAAGCATCCGGACTGGGCCCTTCACGCGGGACCT
TATCCTCGCACTGAGAGGCGGCACCAGCTGGTCCTCAACCTGGCGCTGCCCGAGGTACAGGACTTCATCATCGAC
TCCGTGTCGAGGGTGCTTGGAGGGTCGCGCATCGAGTACGTCAAGTGGGATAACAACAGAGGCATCCACGAGATG
CCATCGGCCAGTACGGCTCACGCGTACATGCTTGGCATGTATCGCGTCATGGAGAAGCTCACGGAGCGCTTCCCG
GACATTCTCTGGGAAGGCTGCGCATCGGGCGGAGGCCGCTTCGATGCCGGCATCCTGCAGTACTTCCCGCAAGTG
TGGACGTCAGACGACACAGATGCGCTGGAACGGCTGCACATCCAATTCGGCACCTCGCTGGCCTATCCGCCGTCG
GCCATGGGGGCTCACGTGTCGGCGGTGCCGAACGGGCTGACGGGACGGACGACGCCCGTCGAGTTCCGGGCGCAC
GTAGCCATGATGGGCGGATCCTTTGGCCTGGAGCTTAATCCGGAGGAGATGCCGGCCGAGGAGCGGGCCAAGGTG
CCGGACCTGATCAAGCTCGCCGAGCGAGTCAATCCGACGGTCGTCGGCGGCAACCTCTGGCGGCTCAGGCTGCCA
GGCGAGTCCAACTGGCCGGCGGCGCTCTTCGTGTCCGAGGATGGACAGCAGGCGGTGCTGTTTTACTTCCAGCTG
CGAGCGGCCGTCAACCAAGCGTGGCCGGTGCTTCGGCTCCAGGGGCTGGACGCCAAGGCGCGATACCTGCTGGAC
GGCAACCAGACAGTATCGGGGGCGACGCTCATGAACAAAGGCGTCTCGTACAGGTTCGCGGGGGACTTTGGCAGC
CGAGTCGTCATACTGAAGCGGCAGTGA
Gene >Ophio5|1234
ATGCGTACGAGAAAGATGGTAGCTCTCCCTTCTCACGTCTTTGGGAGCTGACTTCGGAACGCTGCCACTCTGCCC
AGACCGAGCCATGCCTACGAGCACGTCACTTATCCGAGGCGGCCTCGTCGTGGCCGTCGGCCTATTAGGCCTGGC
GACGGGTTCAGCCATGGTGGTGGTCGACGACGACGACGACGGTGGCGGCGGCGGCGGCCGGCCACGATTCGCGCT
CAACGGCGACAATGTATCGTACCGCTTCCACGTCGACGGCGCGACGGGGGATCTCGTCTCGGATCACTTCGGCGC
GCCCGTCGACGGGCCGTCCATCGAGTCTGACGCGGAGCCTATCCAGGGCTGGGTGGATGTCGTCGGTCGGATACA
GCGTGAGTTGCCGGACTTGGGTAGGGGGGATTTTCGCCTTCCGGCTGTGCAGATTCGCCAGACCGAGGGCTATAC
CGTCAGCGATTTCCGCTATCACTCTCACCAATTGGTCGAGGGCAAACCTTCGCTCAAGGGGCTGCCTTCGACTTT
TGGCTCCGACTCGGACGTCTCGACGCTTCTCGTTCACTTGTACGATAACTTCAGTCAGGTCGCTGCCGACCTGTC
GTACTCGGTGTTCCCCCGCTACGATGCCGTAGTCCGCAGCGTCAGCATCACCAACAGAGGCGAGGGAAATATCAC
CGTCGAGAAGCTCGCCAGCATGAGCGTCGACATGCCCTTTGGTGACTACGACATGGTCGAGCTCAAGGGCGACTG
GGCACGGGAGGGCATGAGAGTTCGCCGCAAGGTCGACTATGGCACCCAAGGGTGAGTGGCAGAGAAGTCATTTGC
AATCGATGCCGCGGCTGAGAATCGCATGTCCGCCACCAGCTTCGGGAGTACCACTGGCTACTCGTCCCACCTGCA
CAACCCCTTCGTCGCCCTCGTCGATTCGACCACCACCGAGTCCCACGGCGAGGCGTGGGGCTTTTCCCTCGTCTA
CACCGGATCCTTCGCCGCCGAGGTCGAGAAGGGGTCCCAAGGCCTGACCCGCGTCGTCATGGGCTTCAACCCGTC
CCAACTGTCGTGGCCGCTCGGCCCCGGCGAAACGCTCGTAGCGCCCGAGGTCGTCGCCGTATTCTCCGACGCCGG
CATAGGAGGCATGTCGCGCAAGTTTCATGGCCTGTATCGGAAGCACCTGATGAAGAGCAAGTATGCCACCCAGCC
GCGCCCTGTTCTGCTCAACAGCTGGGAGGGTCTTCACTTTGACTACGACGCGGCCAGGATCCAGAAGCTTGCCGA
GCAGTCGGCAAGTCTCGGCGTCAAGCTGTTCGTGCTCGACGACGGCTGGTTTGGTGTGCGACACCCCCGCGTCGA
CGAAGATGCTGGCCTCGGGGACTGGGAAGCGAATCCGCAGAGGTTTCCCGACGGCCTCGAGCCGCTGATCGACAA
CATCACAAGCCTCCGCAGCGGGCCTTCACCGTCGGCTTCCAAGCTCAAGTTCGGCCTGTGGTTTGAGCCCGAGAT
GGTCAACCCAAACTCGACACTGTACGAGAAGCATCCGGACTGGGCCCTTCACGCGGGACCTTATCCTCGCACTGA
GAGGCGGCACCAGCTGGTCCTCAACCTGGCGCTGCCCGAGGTACAGGACTTCATCATCGACTCCGTGTCGAGGGT
GCTTGGAGGGTCGCGCATCGAGTACGTCAAGTGGGATAACAACAGAGGCATCCACGAGATGCCATCGGCCAGTAC
GGCTCACGCGTACATGCTTGGCATGTATCGCGTCATGGAGAAGCTCACGGAGCGCTTCCCGGACATTCTCTGGGA
AGGCTGCGCATCGGGCGGAGGCCGCTTCGATGCCGGCATCCTGCAGTACTTCCCGCAAGTGTGGACGTCAGACGA
CACAGATGCGCTGGAACGGCTGCACATCCAATTCGGCACCTCGCTGGCCTATCCGCCGTCGGCCATGGGGGCTCA
CGTGTCGGCGGTGCCGAACGGGCTGACGGGACGGACGACGCCCGTCGAGTTCCGGGCGCACGTAGCCATGATGGG
CGGATCCTTTGGCCTGGAGCTTAATCCGGAGGAGATGCCGGCCGAGGAGCGGGCCAAGGTGCCGGACCTGATCAA
GCTCGCCGAGCGAGTCAATCCGACGGTCGTCGGCGGCAACCTCTGGCGGCTCAGGCTGCCAGGCGAGTCCAACTG
GCCGGCGGCGCTCTTCGTGTCCGAGGATGGACAGCAGGCGGTGCTGTTTTACTTCCAGCTGCGAGCGGCCGTCAA
CCAAGCGTGGCCGGTGCTTCGGCTCCAGGGGCTGGACGCCAAGGCGCGATACCTGCTGGACGGCAACCAGACAGT
ATCGGGGGCGACGCTCATGAACAAAGGCGTCTCGTACAGGTTCGCGGGGGACTTTGGCAGCCGAGTCGTCATACT
GAAGCGGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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