© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1224 |
| Gene name | |
| Location | scaffold_14:37497..39663 |
| Strand | - |
| Gene length (bp) | 2166 |
| Transcript length (bp) | 1920 |
| Coding sequence length (bp) | 1917 |
| Protein length (aa) | 639 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04082 | Fungal_trans | Fungal specific transcription factor domain | 5.4E-22 | 225 | 372 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25502|PUT3_YEAST | Proline utilization trans-activator OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUT3 PE=1 SV=1 | 179 | 533 | 4.0E-35 |
| sp|O14130|YF54_SCHPO | Uncharacterized transcriptional regulatory protein C3C7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.04 PE=3 SV=1 | 126 | 607 | 1.0E-30 |
| sp|O94490|YC79_SCHPO | Uncharacterized transcriptional regulatory protein C417.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.09c PE=3 SV=1 | 182 | 553 | 1.0E-18 |
| sp|P36598|THI1_SCHPO | Thiamine repressible genes regulatory protein thi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi1 PE=1 SV=2 | 182 | 515 | 2.0E-15 |
| sp|O59741|YN25_SCHPO | Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 | 116 | 419 | 1.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25502|PUT3_YEAST | Proline utilization trans-activator OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUT3 PE=1 SV=1 | 179 | 533 | 4.0E-35 |
| sp|O14130|YF54_SCHPO | Uncharacterized transcriptional regulatory protein C3C7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.04 PE=3 SV=1 | 126 | 607 | 1.0E-30 |
| sp|O94490|YC79_SCHPO | Uncharacterized transcriptional regulatory protein C417.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.09c PE=3 SV=1 | 182 | 553 | 1.0E-18 |
| sp|P36598|THI1_SCHPO | Thiamine repressible genes regulatory protein thi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=thi1 PE=1 SV=2 | 182 | 515 | 2.0E-15 |
| sp|O59741|YN25_SCHPO | Uncharacterized transcriptional regulatory protein C530.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.05 PE=3 SV=2 | 116 | 419 | 1.0E-13 |
| sp|O59744|YN28_SCHPO | Uncharacterized transcriptional regulatory protein C530.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.08 PE=3 SV=1 | 216 | 414 | 1.0E-10 |
| sp|P07272|PPR1_YEAST | Pyrimidine pathway regulatory protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PPR1 PE=1 SV=1 | 251 | 316 | 7.0E-08 |
| sp|P04386|GAL4_YEAST | Regulatory protein GAL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL4 PE=1 SV=2 | 215 | 478 | 1.0E-07 |
| sp|Q59LV8|ASG1_CANAL | Activator of stress genes protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ASG1 PE=3 SV=1 | 185 | 409 | 2.0E-07 |
| sp|P40467|ASG1_YEAST | Activator of stress genes 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASG1 PE=1 SV=1 | 80 | 379 | 2.0E-07 |
| sp|Q09922|YAKB_SCHPO | Uncharacterized transcriptional regulatory protein C1F7.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F7.11c PE=3 SV=1 | 155 | 461 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 5.75 | 1.91 | 9.60 |
| CcL | In ants, during behavior modification | 20.51 | 9.80 | 31.22 |
| CcD | In ants, recently dead | 23.72 | 12.07 | 35.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.610951 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1224 MTCVYEGARKILVNESYLRQLEAKAKALDAAAVAAPPSAASASKRGPTDEEDEFADGQPLLEPFTQLNLERPSTS FQGPASSDNFLRNVRKLYHDDDGGTSLDCWQANLYEPGALPGRTFGLRTRLPPVDTARRLFSAQHVYIGTIFAFT EPLEAFEQMLGEAYGGPPDPRDREACLKYAKVLLVLAFGQLYSVNQWVGFRGPPGFDYFADSLGLLPETHEEGSL GGVEALALAGYFMQNMNRRDAAFQYLGRALRMAVSLGLHLEMGDDEDEAGRERRRRVWWSVYSLDRILCVKSGNP LTIQDDDIGVALPSRLPGEPEHGPASVLRDYTQLSRILGQIHDAVYRRSVPRSGRNLVAAVQTIVRALSRWFREL PAVLRFEPQSFSRESVGTLAHYYQCINMTVRPLLLHVVERRLRAIRSGGPDEKERDWKAGLSQATVRVVEMGLGA AHDTVNMMAIAAQRDMVATYGYMDGEHIFSASIVLVMACAAFPANAANTLAMQTGLGLLRYMGERGNSHMGARYE LLASLHAGAGQALSSTSSSSPPLSPPVPVSASASASASLSSCAPAAVPEALAYFPAVDNSFLDEPLYDESGMDFG LWEEGFACPTMDLDFDLAQRTSSTAGGNVNLSDLMYSHG |
| Coding | >Ophio5|1224 ATGACGTGCGTGTACGAGGGCGCGAGGAAGATTCTGGTCAACGAGTCCTATTTGCGGCAGCTCGAGGCCAAGGCC AAGGCCTTGGACGCAGCGGCGGTGGCGGCGCCGCCGTCGGCAGCTTCAGCATCGAAGCGAGGACCGACGGACGAA GAGGACGAGTTTGCGGACGGTCAACCGCTACTGGAACCCTTTACCCAGTTGAACCTCGAGCGGCCATCGACGAGC TTCCAGGGTCCCGCCTCGTCGGACAACTTCTTGCGCAACGTGCGCAAGCTCTACCACGACGACGATGGCGGCACC AGCCTCGACTGCTGGCAGGCCAACCTGTACGAACCTGGGGCGCTGCCCGGACGGACGTTTGGGCTCCGTACGCGG CTACCGCCGGTGGACACGGCGCGCCGGCTGTTCTCGGCGCAGCACGTCTATATCGGTACCATCTTCGCCTTTACG GAGCCGCTCGAGGCGTTTGAGCAGATGCTGGGAGAGGCCTACGGTGGGCCGCCCGACCCGCGCGACCGTGAGGCC TGCCTCAAATATGCCAAGGTGCTACTGGTGCTGGCCTTTGGGCAGCTCTACTCGGTCAACCAGTGGGTGGGCTTC CGCGGCCCGCCGGGCTTCGACTACTTCGCCGACTCGCTCGGCCTGCTGCCGGAGACGCACGAGGAGGGCTCGCTT GGCGGAGTCGAGGCGCTGGCGCTGGCAGGCTACTTCATGCAGAACATGAACCGGCGCGACGCCGCCTTCCAGTAC CTCGGACGGGCCCTGCGCATGGCCGTGTCGCTCGGCCTCCACCTCGAGATGGGCGACGACGAAGACGAAGCCGGG CGCGAGCGGCGGCGGCGCGTCTGGTGGTCCGTCTATAGCCTGGACCGCATATTGTGCGTCAAGTCGGGCAACCCG CTGACGATCCAGGACGACGATATTGGGGTGGCGCTGCCGTCTCGGCTCCCGGGCGAACCGGAGCACGGGCCGGCG TCGGTCCTGCGCGACTACACGCAGCTGTCGCGTATATTGGGCCAGATTCACGACGCCGTCTACCGTCGCTCAGTG CCTCGCTCGGGCCGTAACCTAGTGGCCGCAGTGCAGACCATCGTCCGCGCCCTGTCGCGCTGGTTCCGCGAGCTG CCGGCCGTGCTGCGGTTCGAGCCGCAGAGTTTCAGCCGCGAGAGCGTCGGCACCCTCGCCCACTACTACCAGTGC ATCAACATGACGGTCCGTCCGTTGCTGCTGCACGTCGTCGAGCGTCGTCTGCGGGCCATCCGCTCCGGCGGACCG GACGAGAAGGAGCGCGACTGGAAGGCCGGCCTGTCGCAGGCGACGGTGCGAGTCGTCGAGATGGGGCTGGGAGCC GCCCACGATACGGTCAACATGATGGCCATTGCCGCCCAGCGGGACATGGTCGCCACCTACGGCTACATGGACGGC GAGCACATCTTCTCGGCCTCCATCGTCCTCGTCATGGCCTGCGCCGCCTTCCCGGCCAACGCGGCCAACACGCTG GCCATGCAGACGGGCCTAGGCCTCCTCCGCTACATGGGCGAGCGCGGCAACAGCCACATGGGCGCGCGCTACGAG CTCCTGGCTTCGCTTCACGCGGGCGCGGGACAGGCCCTGTCGTCTACGTCGTCGTCGTCGCCGCCTCTCTCGCCT CCGGTTCCGGTCTCGGCCTCGGCCTCGGCCTCGGCCTCGTTGTCGTCTTGTGCTCCCGCCGCCGTACCCGAGGCC CTGGCATACTTCCCGGCCGTCGACAATAGCTTCCTGGACGAGCCTCTCTACGACGAGAGCGGGATGGATTTCGGC CTTTGGGAGGAGGGCTTCGCCTGTCCGACTATGGATCTGGATTTCGATCTCGCTCAGAGGACTTCTTCGACGGCG GGAGGCAATGTCAACCTATCTGATCTCATGTACAGCCACGGG |
| Transcript | >Ophio5|1224 ATGACGTGCGTGTACGAGGGCGCGAGGAAGATTCTGGTCAACGAGTCCTATTTGCGGCAGCTCGAGGCCAAGGCC AAGGCCTTGGACGCAGCGGCGGTGGCGGCGCCGCCGTCGGCAGCTTCAGCATCGAAGCGAGGACCGACGGACGAA GAGGACGAGTTTGCGGACGGTCAACCGCTACTGGAACCCTTTACCCAGTTGAACCTCGAGCGGCCATCGACGAGC TTCCAGGGTCCCGCCTCGTCGGACAACTTCTTGCGCAACGTGCGCAAGCTCTACCACGACGACGATGGCGGCACC AGCCTCGACTGCTGGCAGGCCAACCTGTACGAACCTGGGGCGCTGCCCGGACGGACGTTTGGGCTCCGTACGCGG CTACCGCCGGTGGACACGGCGCGCCGGCTGTTCTCGGCGCAGCACGTCTATATCGGTACCATCTTCGCCTTTACG GAGCCGCTCGAGGCGTTTGAGCAGATGCTGGGAGAGGCCTACGGTGGGCCGCCCGACCCGCGCGACCGTGAGGCC TGCCTCAAATATGCCAAGGTGCTACTGGTGCTGGCCTTTGGGCAGCTCTACTCGGTCAACCAGTGGGTGGGCTTC CGCGGCCCGCCGGGCTTCGACTACTTCGCCGACTCGCTCGGCCTGCTGCCGGAGACGCACGAGGAGGGCTCGCTT GGCGGAGTCGAGGCGCTGGCGCTGGCAGGCTACTTCATGCAGAACATGAACCGGCGCGACGCCGCCTTCCAGTAC CTCGGACGGGCCCTGCGCATGGCCGTGTCGCTCGGCCTCCACCTCGAGATGGGCGACGACGAAGACGAAGCCGGG CGCGAGCGGCGGCGGCGCGTCTGGTGGTCCGTCTATAGCCTGGACCGCATATTGTGCGTCAAGTCGGGCAACCCG CTGACGATCCAGGACGACGATATTGGGGTGGCGCTGCCGTCTCGGCTCCCGGGCGAACCGGAGCACGGGCCGGCG TCGGTCCTGCGCGACTACACGCAGCTGTCGCGTATATTGGGCCAGATTCACGACGCCGTCTACCGTCGCTCAGTG CCTCGCTCGGGCCGTAACCTAGTGGCCGCAGTGCAGACCATCGTCCGCGCCCTGTCGCGCTGGTTCCGCGAGCTG CCGGCCGTGCTGCGGTTCGAGCCGCAGAGTTTCAGCCGCGAGAGCGTCGGCACCCTCGCCCACTACTACCAGTGC ATCAACATGACGGTCCGTCCGTTGCTGCTGCACGTCGTCGAGCGTCGTCTGCGGGCCATCCGCTCCGGCGGACCG GACGAGAAGGAGCGCGACTGGAAGGCCGGCCTGTCGCAGGCGACGGTGCGAGTCGTCGAGATGGGGCTGGGAGCC GCCCACGATACGGTCAACATGATGGCCATTGCCGCCCAGCGGGACATGGTCGCCACCTACGGCTACATGGACGGC GAGCACATCTTCTCGGCCTCCATCGTCCTCGTCATGGCCTGCGCCGCCTTCCCGGCCAACGCGGCCAACACGCTG GCCATGCAGACGGGCCTAGGCCTCCTCCGCTACATGGGCGAGCGCGGCAACAGCCACATGGGCGCGCGCTACGAG CTCCTGGCTTCGCTTCACGCGGGCGCGGGACAGGCCCTGTCGTCTACGTCGTCGTCGTCGCCGCCTCTCTCGCCT CCGGTTCCGGTCTCGGCCTCGGCCTCGGCCTCGGCCTCGTTGTCGTCTTGTGCTCCCGCCGCCGTACCCGAGGCC CTGGCATACTTCCCGGCCGTCGACAATAGCTTCCTGGACGAGCCTCTCTACGACGAGAGCGGGATGGATTTCGGC CTTTGGGAGGAGGGCTTCGCCTGTCCGACTATGGATCTGGATTTCGATCTCGCTCAGAGGACTTCTTCGACGGCG GGAGGCAATGTCAACCTATCTGATCTCATGTACAGCCACGGGTGA |
| Gene | >Ophio5|1224 ATGACGTGCGTGTACGAGGGCGCGAGGAAGATTCTGGTCAACGAGTCGTGAGTGGCACTCAAAAGCCATAAAGAG AGGCCCCTGCTGACCCGAGGGCGCGGCAGCTATTTGCGGCAGCTCGAGGCCAAGGCCAAGGCCTTGGACGGTGAG TCTTGTCGTCATATCCGTCTCCCTGTTCTTCGCCTAACGCGAGCAGCAGCGGCGGTGGCGGCGCCGCCGTCGGCA GCTTCAGCATCGAAGCGAGGACCGACGGACGAAGAGGACGAGTTTGCGGACGGTCAACCGCTACTGGAACCCTTT ACCCAGTTGAACCTCGAGCGGCCATCGACGAGTAAGGAGACCGACCCCTTTCTCGGGGCATGTGACCGTCGAGGC CTGCCGGGAATTGACCAGAACAACAGGCTTCCAGGGTCCCGCCTCGTCGGACAACTTCTTGCGCAACGTGCGCAA GCTCTACCACGACGACGATGGCGGCACCAGCCTCGACTGCTGGCAGGCCAACCTGTACGAACCTGGGGCGCTGCC CGGACGGACGTTTGGGCTCCGTACGCGGCTACCGCCGGTGGACACGGCGCGCCGGCTGTTCTCGGCGCAGCACGT CTATATCGGTACCATCTTCGCCTTTACGGAGCCGCTCGAGGCGTTTGAGCAGATGCTGGGAGAGGCCTACGGTGG GCCGCCCGACCCGCGCGACCGTGAGGCCTGCCTCAAATATGCCAAGGTGCTACTGGTGCTGGCCTTTGGGCAGCT CTACTCGGTCAACCAGTGGGTGGGCTTCCGCGGCCCGCCGGGCTTCGACTACTTCGCCGACTCGCTCGGCCTGCT GCCGGAGACGCACGAGGAGGGCTCGCTTGGCGGAGTCGAGGCGCTGGCGCTGGCAGGCTACTTCATGCAGAACAT GAACCGGCGCGACGCCGCCTTCCAGTACCTCGGACGGGCCCTGCGCATGGCCGTGTCGCTCGGCCTCCACCTCGA GATGGGCGACGACGAAGACGAAGCCGGGCGCGAGCGGCGGCGGCGCGTCTGGTGGTCCGTCTATAGCCTGGACCG CATATTGTGCGTCAAGTCGGGCAACCCGCTGACGATCCAGGACGACGATATTGGGGTGGCGCTGCCGTCTCGGCT CCCGGGCGAACCGGAGCACGGGCCGGCGTCGGTCCTGCGCGACTACACGCAGCTGTCGCGTATATTGGGCCAGAT TCACGACGCCGTCTACCGTCGCTCAGTGCCTCGCTCGGGCCGTAACCTAGTGGCCGCAGTGCAGACCATCGTCCG CGCCCTGTCGCGCTGGTTCCGCGAGCTGCCGGCCGTGCTGCGGTTCGAGCCGCAGAGTTTCAGCCGCGAGAGCGT CGGCACCCTCGCCCACTACTACCAGTGCATCAACATGACGGTCCGTCCGTTGCTGCTGCACGTCGTCGAGCGTCG TCTGCGGGCCATCCGCTCCGGCGGACCGGACGAGAAGGAGCGCGACTGGAAGGCCGGCCTGTCGCAGGCGACGGT GCGAGTCGTCGAGATGGGGCTGGGAGCCGCCCACGATACGGTCAACATGATGGCCATTGCCGCCCAGCGGGACAT GGTCGGTTGGTCTACCCAACCCCTTCTATCCTTTCCTCGTCGTACACGGCGCACACTGGCTCACTTCCAGCAGCC ACCTACGGCTACATGGACGGCGAGCACATCTTCTCGGCCTCCATCGTCCTCGTCATGGCCTGCGCCGCCTTCCCG GCCAACGCGGCCAACACGCTGGCCATGCAGACGGGCCTAGGCCTCCTCCGCTACATGGGCGAGCGCGGCAACAGC CACATGGGCGCGCGCTACGAGCTCCTGGCTTCGCTTCACGCGGGCGCGGGACAGGCCCTGTCGTCTACGTCGTCG TCGTCGCCGCCTCTCTCGCCTCCGGTTCCGGTCTCGGCCTCGGCCTCGGCCTCGGCCTCGTTGTCGTCTTGTGCT CCCGCCGCCGTACCCGAGGCCCTGGCATACTTCCCGGCCGTCGACAATAGCTTCCTGGACGAGCCTCTCTACGAC GAGAGCGGGATGGATTTCGGCCTTTGGGAGGAGGGCTTCGCCTGTCCGACTATGGATCTGGATTTCGATCTCGCT CAGAGGACTTCTTCGACGGCGGGAGGCAATGTCAACCTATCTGATCTCATGTACAGCCACGGGTGA |