Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|122
Gene name
Locationscaffold_1000:2556..4462
Strand-
Gene length (bp)1906
Transcript length (bp)1782
Coding sequence length (bp)1779
Protein length (aa) 593

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14604 SH3_9 Variant SH3 domain 2.1E-12 427 473
PF00018 SH3_1 SH3 domain 1.8E-07 424 469

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 54 0.45

Transmembrane Domains

Domain # Start End Length
1 228 250 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 14.41 6.49 22.33
CcL In ants, during behavior modification 50.02 19.85 80.18
CcD In ants, recently dead 42.95 22.53 63.37

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.610355 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|122
MAHKHHHRSLHDRRDVYSDLSRFVDMEFINNDRSKPPPPPPPPPSPPGNDESDGQRAAKDADMRTVVETIYKTLD
PTFSGPIAGYVTLSEDTHPPPSPAPGPASSDRKLARIESKSLDTTAPSLPTSESPSVAQITSSFFESAAVSSPTT
EVAASASSTTSADESSSSSFLSSSSSSSSFSSISSSTSSSISSPTSSARAAADLSRGGKGGHDSGNGGGGGSGPG
VKVGIALGVMGGIVALGLMAFFLLKRRRKQAEKGYKLQDEKPRKGFGAISNPFESSSARDNPGAPRISLRPVTQF
LPNWNGLEKRTSKGPMTAKAAAEPNQGDPWDRTMVNPFDNVPSTIAEEQSVRSFSTSTGSINGSNPFAGGRTVGP
PSTRSPPPGSMALSTSPTGTDYSLSSVSSEAAAAGAAAGLPPVSAVHRVQLDFKPTLDDEMELRIGELIRLLHEY
DDGWCLVSRLDRSQQGVVPRTCLSTRPVKPRQPQGAPRPGPPVNPTGPGRGPNQVGGPGPGPGPTRPGPPGGGFG
RPPSPPRPPTTQSFRSGPVGGNNGHQGQQPMNRPGWPGSMKPRYRVSPPGPPPQYRPMGPISRKPMPG
Coding >Ophio5|122
ATGGCGCACAAGCATCATCATCGGTCTTTGCACGATCGACGCGATGTCTACAGCGATCTGTCTCGCTTTGTCGAC
ATGGAGTTTATCAACAATGATAGATCCAAGCCGCCACCACCACCACCGCCGCCCCCGTCCCCGCCTGGCAACGAC
GAGAGCGATGGACAGCGCGCTGCTAAAGATGCTGATATGAGGACCGTCGTGGAAACCATCTACAAAACCCTGGAC
CCTACCTTCTCGGGACCCATCGCCGGCTACGTGACGCTAAGCGAAGATACCCATCCGCCTCCCTCGCCGGCTCCT
GGCCCAGCGTCATCAGATCGCAAGCTCGCTCGTATTGAGAGCAAATCCCTCGACACCACAGCTCCGTCCCTTCCC
ACATCTGAGTCTCCCAGCGTTGCCCAAATAACCAGCAGCTTCTTCGAGTCCGCCGCCGTCTCCTCACCAACGACG
GAAGTAGCAGCCTCGGCATCGTCGACGACATCAGCAGACGAGTCGTCGTCGTCTTCTTTTCTGTCGTCTTCCTCT
TCATCATCTTCCTTCTCGTCCATCTCCTCGTCCACCTCCTCTTCCATCTCGTCGCCCACCTCCAGCGCCCGTGCA
GCGGCCGACCTGTCCAGAGGCGGCAAGGGCGGTCACGACTCCGGGAATGGCGGCGGTGGAGGGTCGGGGCCCGGC
GTCAAGGTCGGCATCGCCTTGGGTGTCATGGGCGGCATCGTTGCACTGGGCCTGATGGCCTTTTTCCTGCTCAAG
CGTCGCCGCAAGCAGGCTGAAAAGGGCTACAAGCTCCAAGACGAGAAGCCTCGCAAAGGTTTCGGTGCTATATCG
AATCCCTTTGAGTCGTCGTCGGCTCGCGACAATCCCGGGGCGCCTCGCATCAGCCTCCGTCCCGTCACCCAATTC
CTGCCCAACTGGAACGGGCTGGAAAAGCGGACGAGTAAGGGTCCCATGACGGCAAAGGCAGCGGCAGAGCCTAAT
CAGGGGGATCCATGGGACCGCACCATGGTCAATCCCTTCGACAACGTCCCCTCCACCATCGCCGAGGAGCAGAGC
GTCCGCAGCTTCAGCACCTCGACGGGAAGCATCAACGGGAGCAATCCCTTTGCCGGAGGGCGAACCGTCGGCCCC
CCGAGCACAAGGTCCCCGCCGCCCGGCAGCATGGCCTTGTCGACGAGTCCGACGGGGACCGACTACAGCCTCTCG
TCCGTTTCGTCGGAAGCGGCGGCCGCCGGTGCCGCCGCGGGCTTGCCCCCCGTCAGCGCCGTTCATCGCGTTCAG
CTCGACTTCAAGCCGACGCTAGACGATGAGATGGAACTGAGAATCGGCGAGTTGATCCGCCTGCTTCACGAGTAC
GACGACGGATGGTGTCTGGTCAGCCGCCTCGACCGGTCACAGCAAGGCGTCGTGCCGCGGACGTGTCTCTCGACG
CGTCCCGTCAAGCCGCGTCAGCCGCAGGGTGCGCCTCGTCCCGGTCCTCCCGTGAACCCGACGGGTCCTGGACGG
GGGCCCAACCAGGTCGGCGGTCCGGGTCCGGGTCCGGGTCCGACCAGACCGGGCCCTCCTGGTGGCGGGTTTGGA
CGTCCGCCGTCTCCTCCACGGCCTCCGACGACGCAGAGCTTCCGGTCCGGTCCGGTGGGTGGTAACAACGGCCAT
CAGGGGCAGCAGCCGATGAACCGACCAGGGTGGCCCGGATCGATGAAGCCCCGGTATCGCGTGTCGCCGCCCGGA
CCCCCCCCTCAATATCGTCCGATGGGTCCCATAAGCAGAAAGCCGATGCCGGGC
Transcript >Ophio5|122
ATGGCGCACAAGCATCATCATCGGTCTTTGCACGATCGACGCGATGTCTACAGCGATCTGTCTCGCTTTGTCGAC
ATGGAGTTTATCAACAATGATAGATCCAAGCCGCCACCACCACCACCGCCGCCCCCGTCCCCGCCTGGCAACGAC
GAGAGCGATGGACAGCGCGCTGCTAAAGATGCTGATATGAGGACCGTCGTGGAAACCATCTACAAAACCCTGGAC
CCTACCTTCTCGGGACCCATCGCCGGCTACGTGACGCTAAGCGAAGATACCCATCCGCCTCCCTCGCCGGCTCCT
GGCCCAGCGTCATCAGATCGCAAGCTCGCTCGTATTGAGAGCAAATCCCTCGACACCACAGCTCCGTCCCTTCCC
ACATCTGAGTCTCCCAGCGTTGCCCAAATAACCAGCAGCTTCTTCGAGTCCGCCGCCGTCTCCTCACCAACGACG
GAAGTAGCAGCCTCGGCATCGTCGACGACATCAGCAGACGAGTCGTCGTCGTCTTCTTTTCTGTCGTCTTCCTCT
TCATCATCTTCCTTCTCGTCCATCTCCTCGTCCACCTCCTCTTCCATCTCGTCGCCCACCTCCAGCGCCCGTGCA
GCGGCCGACCTGTCCAGAGGCGGCAAGGGCGGTCACGACTCCGGGAATGGCGGCGGTGGAGGGTCGGGGCCCGGC
GTCAAGGTCGGCATCGCCTTGGGTGTCATGGGCGGCATCGTTGCACTGGGCCTGATGGCCTTTTTCCTGCTCAAG
CGTCGCCGCAAGCAGGCTGAAAAGGGCTACAAGCTCCAAGACGAGAAGCCTCGCAAAGGTTTCGGTGCTATATCG
AATCCCTTTGAGTCGTCGTCGGCTCGCGACAATCCCGGGGCGCCTCGCATCAGCCTCCGTCCCGTCACCCAATTC
CTGCCCAACTGGAACGGGCTGGAAAAGCGGACGAGTAAGGGTCCCATGACGGCAAAGGCAGCGGCAGAGCCTAAT
CAGGGGGATCCATGGGACCGCACCATGGTCAATCCCTTCGACAACGTCCCCTCCACCATCGCCGAGGAGCAGAGC
GTCCGCAGCTTCAGCACCTCGACGGGAAGCATCAACGGGAGCAATCCCTTTGCCGGAGGGCGAACCGTCGGCCCC
CCGAGCACAAGGTCCCCGCCGCCCGGCAGCATGGCCTTGTCGACGAGTCCGACGGGGACCGACTACAGCCTCTCG
TCCGTTTCGTCGGAAGCGGCGGCCGCCGGTGCCGCCGCGGGCTTGCCCCCCGTCAGCGCCGTTCATCGCGTTCAG
CTCGACTTCAAGCCGACGCTAGACGATGAGATGGAACTGAGAATCGGCGAGTTGATCCGCCTGCTTCACGAGTAC
GACGACGGATGGTGTCTGGTCAGCCGCCTCGACCGGTCACAGCAAGGCGTCGTGCCGCGGACGTGTCTCTCGACG
CGTCCCGTCAAGCCGCGTCAGCCGCAGGGTGCGCCTCGTCCCGGTCCTCCCGTGAACCCGACGGGTCCTGGACGG
GGGCCCAACCAGGTCGGCGGTCCGGGTCCGGGTCCGGGTCCGACCAGACCGGGCCCTCCTGGTGGCGGGTTTGGA
CGTCCGCCGTCTCCTCCACGGCCTCCGACGACGCAGAGCTTCCGGTCCGGTCCGGTGGGTGGTAACAACGGCCAT
CAGGGGCAGCAGCCGATGAACCGACCAGGGTGGCCCGGATCGATGAAGCCCCGGTATCGCGTGTCGCCGCCCGGA
CCCCCCCCTCAATATCGTCCGATGGGTCCCATAAGCAGAAAGCCGATGCCGGGCTGA
Gene >Ophio5|122
ATGGCGCACAAGCATCATCATCGGTCTTTGCACGATCGACGCGATGTCTACAGCGATCTGTCTCGCTTTGTCGAC
ATGGAGTTTATCAACAATGATAGATCCAAGCCGCCACCACCACCACCGCCGCCCCCGTCCCCGCCTGGCAACGAC
GAGAGCGATGGACAGCGCGCTGCTAAAGATGGTAGGCTTTGCTCGCCCCTTTTTTTTTTCTTTTTGCTTGTGTGG
TTTCGCCGCTGACGCGTCTGCAAGCTGATATGAGGACCGTCGTGGAAACCATCTACAAAACCCTGGACCCTACCT
TCTCGGGACCCATCGCCGGCTACGTGACGCTAAGCGAAGATACCCATCCGCCTCCCTCGCCGGCTCCTGGCCCAG
CGTCATCAGATCGCAAGCTCGCTCGTATTGAGAGCAAATCCCTCGACACCACAGCTCCGTCCCTTCCCACATCTG
AGTCTCCCAGCGTTGCCCAAATAACCAGCAGCTTCTTCGAGTCCGCCGCCGTCTCCTCACCAACGACGGAAGTAG
CAGCCTCGGCATCGTCGACGACATCAGCAGACGAGTCGTCGTCGTCTTCTTTTCTGTCGTCTTCCTCTTCATCAT
CTTCCTTCTCGTCCATCTCCTCGTCCACCTCCTCTTCCATCTCGTCGCCCACCTCCAGCGCCCGTGCAGCGGCCG
ACCTGTCCAGAGGCGGCAAGGGCGGTCACGACTCCGGGAATGGCGGCGGTGGAGGGTCGGGGCCCGGCGTCAAGG
TCGGCATCGCCTTGGGTGTCATGGGCGGCATCGTTGCACTGGGCCTGATGGCCTTTTTCCTGCTCAAGCGTCGCC
GCAAGCAGGCTGAAAAGGGCTACAAGCTCCAAGACGAGAAGCCTCGCAAAGGTTTCGGTGCTATATCGAATCCCT
TTGAGTCGTCGTCGGCTCGCGACAATCCCGGGGCGCCTCGCATCAGCCTCCGTCCCGTCACCCAATTCCTGCCCA
ACTGGAACGGGCTGGAAAAGCGGACGAGTAAGGGTCCCATGACGGCAAAGGCAGCGGCAGAGCCTAATCAGGGGG
ATCCATGGGACCGCACCATGGTCAATCCCTTCGACAACGTCCCCTCCACCATCGCCGAGGAGCAGAGCGTCCGCA
GCTTCAGCACCTCGACGGGAAGCATCAACGGGAGCAATCCCTTTGCCGGAGGGCGAACCGTCGGCCCCCCGAGCA
CAAGGTCCCCGCCGCCCGGCAGCATGGCCTTGTCGACGAGTCCGACGGGGACCGACTACAGCCTCTCGTCCGTTT
CGTCGGAAGCGGCGGCCGCCGGTGCCGCCGCGGGCTTGCCCCCCGTCAGCGCCGTTCATCGCGTTCAGCTCGACT
TCAAGCCGACGCTAGACGATGAGATGGAACTGAGAATCGGCGAGTTGATCCGCCTGCTTCACGAGTACGACGACG
GATGGGTAAGTGATTTCATTTTCCCCACCCGCTCGGCCCTCCCTGCTAACGTGGCCGGCAGTGTCTGGTCAGCCG
CCTCGACCGGTCACAGCAAGGCGTCGTGCCGCGGACGTGTCTCTCGACGCGTCCCGTCAAGCCGCGTCAGCCGCA
GGGTGCGCCTCGTCCCGGTCCTCCCGTGAACCCGACGGGTCCTGGACGGGGGCCCAACCAGGTCGGCGGTCCGGG
TCCGGGTCCGGGTCCGACCAGACCGGGCCCTCCTGGTGGCGGGTTTGGACGTCCGCCGTCTCCTCCACGGCCTCC
GACGACGCAGAGCTTCCGGTCCGGTCCGGTGGGTGGTAACAACGGCCATCAGGGGCAGCAGCCGATGAACCGACC
AGGGTGGCCCGGATCGATGAAGCCCCGGTATCGCGTGTCGCCGCCCGGACCCCCCCCTCAATATCGTCCGATGGG
TCCCATAAGCAGAAAGCCGATGCCGGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail