Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1216
Gene name
Locationscaffold_14:10989..11639
Strand-
Gene length (bp)650
Transcript length (bp)582
Coding sequence length (bp)579
Protein length (aa) 193

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09801 SYS1 Integral membrane protein S linking to the trans Golgi network 8.2E-49 13 155

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P41544|SYS1_YEAST Protein SYS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYS1 PE=1 SV=1 6 163 7.0E-23
sp|Q78S06|SYS1_MOUSE Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1 17 165 5.0E-13
sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1 17 165 2.0E-12
sp|A4K2W1|SYS1_PONAB Protein SYS1 homolog OS=Pongo abelii GN=SYS1 PE=3 SV=1 17 165 3.0E-12
sp|A4K2N5|SYS1_PAPAN Protein SYS1 homolog OS=Papio anubis GN=SYS1 PE=3 SV=1 17 165 3.0E-12
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P41544|SYS1_YEAST Protein SYS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYS1 PE=1 SV=1 6 163 7.0E-23
sp|Q78S06|SYS1_MOUSE Protein SYS1 homolog OS=Mus musculus GN=Sys1 PE=2 SV=1 17 165 5.0E-13
sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1 17 165 2.0E-12
sp|A4K2W1|SYS1_PONAB Protein SYS1 homolog OS=Pongo abelii GN=SYS1 PE=3 SV=1 17 165 3.0E-12
sp|A4K2N5|SYS1_PAPAN Protein SYS1 homolog OS=Papio anubis GN=SYS1 PE=3 SV=1 17 165 3.0E-12
sp|Q8N2H4|SYS1_HUMAN Protein SYS1 homolog OS=Homo sapiens GN=SYS1 PE=1 SV=1 17 165 3.0E-12
sp|A7S6Y0|SYS1_NEMVE Protein SYS1 homolog OS=Nematostella vectensis GN=sys1 PE=3 SV=1 17 165 1.0E-10
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 27 49 22
2 69 91 22
3 98 120 22
4 125 147 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1216
MARRRRPPRAGALSELQPMKIATQIAILQSVFYLAAFVLLLFTALVAGFPFRLDLLFGWDLVRGDTTRGWLLAFV
WILDGGLVTAVGIVLFVARSKLVPDFALTVHLLHLVFTTLYSRALPAHSMWWLAMLASSAVAVTLGTWGCRYREL
QPVFFGRAAAPRQRVDEEEEVAPLQEPGPGEFEMVHMKKHAGV
Coding >Ophio5|1216
ATGGCGCGACGTCGACGACCCCCCCGCGCAGGCGCCCTCTCGGAACTGCAACCGATGAAGATCGCGACGCAAATC
GCTATCCTGCAATCCGTCTTTTACCTCGCCGCCTTTGTACTTTTGCTCTTTACCGCTTTGGTCGCCGGCTTTCCC
TTCCGCTTGGACTTGTTGTTTGGTTGGGACCTTGTTCGGGGGGATACGACGCGTGGTTGGTTATTGGCCTTTGTG
TGGATTCTTGATGGTGGTCTTGTCACAGCCGTCGGAATCGTCCTGTTCGTGGCGAGGAGTAAACTCGTTCCGGAC
TTTGCTTTGACAGTTCACCTCTTACACCTCGTCTTCACTACGCTTTATTCTCGCGCCTTACCGGCACATTCCATG
TGGTGGCTCGCCATGTTGGCCTCTTCCGCCGTCGCCGTCACACTCGGTACCTGGGGCTGTCGATATCGCGAGCTG
CAACCCGTCTTCTTCGGTCGTGCGGCGGCGCCCAGGCAGAGAGTCGATGAGGAAGAAGAGGTGGCGCCTTTGCAG
GAACCTGGTCCTGGGGAGTTCGAGATGGTTCATATGAAGAAGCATGCTGGCGTA
Transcript >Ophio5|1216
ATGGCGCGACGTCGACGACCCCCCCGCGCAGGCGCCCTCTCGGAACTGCAACCGATGAAGATCGCGACGCAAATC
GCTATCCTGCAATCCGTCTTTTACCTCGCCGCCTTTGTACTTTTGCTCTTTACCGCTTTGGTCGCCGGCTTTCCC
TTCCGCTTGGACTTGTTGTTTGGTTGGGACCTTGTTCGGGGGGATACGACGCGTGGTTGGTTATTGGCCTTTGTG
TGGATTCTTGATGGTGGTCTTGTCACAGCCGTCGGAATCGTCCTGTTCGTGGCGAGGAGTAAACTCGTTCCGGAC
TTTGCTTTGACAGTTCACCTCTTACACCTCGTCTTCACTACGCTTTATTCTCGCGCCTTACCGGCACATTCCATG
TGGTGGCTCGCCATGTTGGCCTCTTCCGCCGTCGCCGTCACACTCGGTACCTGGGGCTGTCGATATCGCGAGCTG
CAACCCGTCTTCTTCGGTCGTGCGGCGGCGCCCAGGCAGAGAGTCGATGAGGAAGAAGAGGTGGCGCCTTTGCAG
GAACCTGGTCCTGGGGAGTTCGAGATGGTTCATATGAAGAAGCATGCTGGCGTATGA
Gene >Ophio5|1216
ATGGCGCGACGTCGACGACCCCCCCGCGCAGGCGCCCTCTCGGAACTGCAACCGATGAAGATCGCGACGCAAATC
GCTATCCTGCAATCCGTCTTTTACCTCGCCGCCTTTGTACTTTTGCTCTTTACCGCTTTGGTCGCCGGCTTTCCC
TTCCGCTTGGACTTGTTGTTTGGTTGGGACCTTGTTCGGGGGGATACGACGCGTGGTTGGTTATTGGCCTTTGTG
TGGATTCTTGATGGTGGTCTTGTCACGTTTGTCTCTCTCCATTCTTTAAGATTTTATTTCCTCCCCCTCTCCTTT
TACTGATACTATGCAACAGAGCCGTCGGAATCGTCCTGTTCGTGGCGAGGAGTAAACTCGTTCCGGACTTTGCTT
TGACAGTTCACCTCTTACACCTCGTCTTCACTACGCTTTATTCTCGCGCCTTACCGGCACATTCCATGTGGTGGC
TCGCCATGTTGGCCTCTTCCGCCGTCGCCGTCACACTCGGTACCTGGGGCTGTCGATATCGCGAGCTGCAACCCG
TCTTCTTCGGTCGTGCGGCGGCGCCCAGGCAGAGAGTCGATGAGGAAGAAGAGGTGGCGCCTTTGCAGGAACCTG
GTCCTGGGGAGTTCGAGATGGTTCATATGAAGAAGCATGCTGGCGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail