Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1187
Gene name
Locationscaffold_138:35929..37277
Strand-
Gene length (bp)1348
Transcript length (bp)1080
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01435 Peptidase_M48 Peptidase family M48 2.9E-31 133 318

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1 54 331 2.0E-37
sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2 74 338 2.0E-32
sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2 120 335 3.0E-31
sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1 72 335 5.0E-30
sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1 120 336 1.0E-29
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1 54 331 2.0E-37
sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2 74 338 2.0E-32
sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2 120 335 3.0E-31
sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1 72 335 5.0E-30
sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1 120 336 1.0E-29
sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=1 SV=1 72 335 1.0E-29
sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1 8 334 2.0E-28
sp|P43674|YCAL_ECOLI Uncharacterized metalloprotease YcaL OS=Escherichia coli (strain K12) GN=ycaL PE=3 SV=3 99 320 2.0E-07
sp|P66949|BEPA_SHIFL Beta-barrel assembly-enhancing protease OS=Shigella flexneri GN=bepA PE=3 SV=1 159 316 2.0E-06
sp|P66948|BEPA_ECOLI Beta-barrel assembly-enhancing protease OS=Escherichia coli (strain K12) GN=bepA PE=1 SV=1 159 316 2.0E-06
sp|P66950|BEPA_SALTY Beta-barrel assembly-enhancing protease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bepA PE=3 SV=1 159 316 2.0E-06
sp|P66951|BEPA_SALTI Beta-barrel assembly-enhancing protease OS=Salmonella typhi GN=bepA PE=3 SV=1 159 316 2.0E-06
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GO

GO Term Description Terminal node
GO:0006508 proteolysis Yes
GO:0004222 metalloendopeptidase activity Yes
GO:0043170 macromolecule metabolic process No
GO:0016787 hydrolase activity No
GO:0019538 protein metabolic process No
GO:0008237 metallopeptidase activity No
GO:0008152 metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0003674 molecular_function No
GO:0006807 nitrogen compound metabolic process No
GO:0008233 peptidase activity No
GO:0008150 biological_process No
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0071704 organic substance metabolic process No
GO:0004175 endopeptidase activity No
GO:0140096 catalytic activity, acting on a protein No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 57 79 22
2 209 231 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1187
MALTRHLLRWRALRPFSHLSGPGTSRAAKTTIAAPRRRHGRLFTSTGGGGGGGGGGGGGGGVCVAAAAAAALAFY
LCLSDTVEGTGRRRINFIPTSLVADVFADSDWQMMQDQLDRGGFLLDDGDPRVDAVERVLRRLVPVCGMEWNWVI
EIIDGVNVVNAHIFPNQTIFLYTGLLELCQSEDHLAAILGHELAHAACRHKEEQMSAAVVVTLTTGCFFFATGLV
SGLFMFTIWSLTGGYILPRLLLDMPMGRRQESEADYIGLMMMADACYDPRAAVGLWQSMEKLDRLERMGDEEVPE
IFATHPSNANRIAKIKQWLPEAMRRRAQSGCSPLSTRYAIPEMLLARRTFNPSSRPPES
Coding >Ophio5|1187
ATGGCCCTCACGCGCCACCTTCTGCGCTGGCGCGCCCTCCGACCATTCTCGCACCTGAGTGGACCCGGGACCAGT
CGGGCGGCGAAGACGACGATTGCGGCTCCGCGTCGGCGACACGGTCGACTCTTCACCAGCACGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGCGTCGCTGCTGCTGCTGCTGCGGCGCTGGCGTTTTAC
CTTTGCTTGTCGGACACGGTGGAGGGCACGGGCAGGAGACGGATTAACTTCATTCCTACCTCTCTCGTCGCTGAC
GTCTTTGCTGATTCCGACTGGCAGATGATGCAGGATCAGTTGGATAGGGGCGGCTTCCTGCTTGATGACGGGGAT
CCGCGGGTGGATGCGGTTGAGAGGGTGCTGCGGCGGCTTGTGCCTGTGTGTGGCATGGAATGGAATTGGGTTATA
GAAATCATTGACGGAGTCAACGTTGTCAACGCCCATATCTTCCCCAACCAAACAATTTTTCTCTACACGGGGCTC
CTGGAACTCTGCCAGTCCGAAGACCACCTTGCCGCTATCCTAGGCCATGAGCTCGCGCACGCCGCATGCCGACAC
AAAGAGGAGCAAATGTCAGCCGCCGTCGTGGTGACGTTGACGACGGGCTGTTTTTTCTTCGCCACCGGCCTCGTC
TCCGGCTTGTTCATGTTTACTATCTGGAGTCTTACCGGCGGTTACATCTTACCGAGATTGTTACTCGACATGCCC
ATGGGTCGGAGGCAGGAGTCGGAGGCGGATTATATCGGGTTGATGATGATGGCTGACGCTTGTTATGATCCGAGG
GCTGCCGTCGGCCTTTGGCAGTCTATGGAGAAGTTGGACAGGTTGGAGAGGATGGGGGACGAGGAGGTGCCTGAG
ATTTTTGCCACCCATCCCTCGAACGCAAATAGAATTGCCAAGATCAAGCAATGGCTTCCCGAGGCTATGCGACGA
CGCGCCCAAAGCGGTTGCTCCCCGCTAAGCACGCGATACGCCATACCTGAAATGCTATTGGCGAGAAGGACATTC
AACCCGTCTTCAAGACCACCCGAGAGT
Transcript >Ophio5|1187
ATGGCCCTCACGCGCCACCTTCTGCGCTGGCGCGCCCTCCGACCATTCTCGCACCTGAGTGGACCCGGGACCAGT
CGGGCGGCGAAGACGACGATTGCGGCTCCGCGTCGGCGACACGGTCGACTCTTCACCAGCACGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGCGTCGCTGCTGCTGCTGCTGCGGCGCTGGCGTTTTAC
CTTTGCTTGTCGGACACGGTGGAGGGCACGGGCAGGAGACGGATTAACTTCATTCCTACCTCTCTCGTCGCTGAC
GTCTTTGCTGATTCCGACTGGCAGATGATGCAGGATCAGTTGGATAGGGGCGGCTTCCTGCTTGATGACGGGGAT
CCGCGGGTGGATGCGGTTGAGAGGGTGCTGCGGCGGCTTGTGCCTGTGTGTGGCATGGAATGGAATTGGGTTATA
GAAATCATTGACGGAGTCAACGTTGTCAACGCCCATATCTTCCCCAACCAAACAATTTTTCTCTACACGGGGCTC
CTGGAACTCTGCCAGTCCGAAGACCACCTTGCCGCTATCCTAGGCCATGAGCTCGCGCACGCCGCATGCCGACAC
AAAGAGGAGCAAATGTCAGCCGCCGTCGTGGTGACGTTGACGACGGGCTGTTTTTTCTTCGCCACCGGCCTCGTC
TCCGGCTTGTTCATGTTTACTATCTGGAGTCTTACCGGCGGTTACATCTTACCGAGATTGTTACTCGACATGCCC
ATGGGTCGGAGGCAGGAGTCGGAGGCGGATTATATCGGGTTGATGATGATGGCTGACGCTTGTTATGATCCGAGG
GCTGCCGTCGGCCTTTGGCAGTCTATGGAGAAGTTGGACAGGTTGGAGAGGATGGGGGACGAGGAGGTGCCTGAG
ATTTTTGCCACCCATCCCTCGAACGCAAATAGAATTGCCAAGATCAAGCAATGGCTTCCCGAGGCTATGCGACGA
CGCGCCCAAAGCGGTTGCTCCCCGCTAAGCACGCGATACGCCATACCTGAAATGCTATTGGCGAGAAGGACATTC
AACCCGTCTTCAAGACCACCCGAGAGTTAA
Gene >Ophio5|1187
ATGGCCCTCACGCGCCACCTTCTGCGCTGGCGCGCCCTCCGACCATTCTCGCACCTGAGTGGACCCGGGACCAGT
CGGGCGGCGAAGACGACGATTGCGGCTCCGCGTCGGCGACACGGTCGACTCTTCACCAGCACGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGCGTCGCTGCTGCTGCTGCTGCGGCGCTGGCGTTTTAC
CTTTGCTTGTCGGACACGGTGGAGGGCACGGGCAGGAGACGGATTAACTTCATTCCTACCTCTCTCGTCGCTGAC
GTCTTTGCTGATTCCGACTGGCAGATGATGCAGGATCAGTTGGATAGGGGCGGCTTCCTGCTTGATGACGGGGAT
CCGCGGGTGGATGCGGTTGAGAGGGTGCTGCGGCGGCTTGTGCCTGTGTGTGGCATGGAATGGAATTGGGTTATA
GAAATCATTGACGGAGTCAGTAAGCCCTCCCCTCTTTCCCTTCCTCCCTCCCCTTGCCCATCCATCATCCAATCT
CTCCCTTCTCAACAACTAAGCAATGACGGCCTCTTAGACGTTGTCAACGCCCATATCTTCCCCAACCAAACAATT
TTTCTCTACACGGGGCTCCTGGAACTCTGCCAGTCCGAAGACCACCTTGCCGCTATCCTAGGCCATGAGCTCGCG
CACGCCGCATGCCGACACAAAGAGGAGCAAATGTCAGCCGCCGTCGTGGTGACGTTGACGACGGGCTGTTTTTTC
TTCGCCACCGGCCTCGTCTCCGGCTTGTTCATGTTTACTATCTGGAGTCTTACCGGCGGTTACATCTTACCGAGA
TTGTTACTCGACATGCCCATGGGTCGGAGGCAGGAGTCGGAGGCGGATTATATCGGGTTGATGATGATGGCTGAC
GCTTGTTATGATCCGAGGGCTGCCGTCGGCCTTTGGCAGTCTATGGAGAAGTTGGACAGGTTGGAGAGGATGGGG
GACGAGGAGGTGCCTGAGATTTTTGCCACCCATCCCTCGGTGAGTCTCTTTCTTTTTTTTCTTCTTCCCTCTCTC
CCTTGTTTCATTTCATTCCTCAATCTACGGCTTACCAAATATGATCAGAACGCAAATAGAATTGCCAAGATCAAG
CAATGGCTTCCCGAGGCTATGCGACGACGCGCCCAAAGCGGTTGCTCCCCGCTAAGCACGCGATACGCCATACCT
GAAATGCTATTGGCGAGAAGGACATTCAACCCGTCTTCAAGACCACCCGAGAGTTAGTCTCTCTTTTTTTTTTTT
TCCCCACCTCTCGCTCTCTCCGTCTCTATTTATTTATTTCCCTTTCCTGACTTGGAGATTTCTCCTAGGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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