Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|117
Gene name
Locationscaffold_100:35376..37023
Strand+
Gene length (bp)1647
Transcript length (bp)1521
Coding sequence length (bp)1518
Protein length (aa) 506

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04882 Peroxin-3 Peroxin-3 5.3E-162 7 452

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q874C0|PEX3_YARLI Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PEX3 PE=3 SV=1 8 454 3.0E-61
sp|Q01497|PEX3_PICAN Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1 1 452 1.0E-49
sp|Q92262|PEX3_PICPA Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3 PE=1 SV=1 9 452 9.0E-44
sp|Q6BK00|PEX3_DEBHA Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PEX3 PE=3 SV=1 1 455 2.0E-35
sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1 1 452 8.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|Q874C0|PEX3_YARLI Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PEX3 PE=3 SV=1 8 454 3.0E-61
sp|Q01497|PEX3_PICAN Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1 1 452 1.0E-49
sp|Q92262|PEX3_PICPA Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3 PE=1 SV=1 9 452 9.0E-44
sp|Q6BK00|PEX3_DEBHA Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PEX3 PE=3 SV=1 1 455 2.0E-35
sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1 1 452 8.0E-24
sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1 1 452 1.0E-22
sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2 SV=1 1 452 1.0E-22
sp|O94227|PEX3_KLULA Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PEX3 PE=3 SV=1 43 452 3.0E-22
sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1 SV=1 10 452 1.0E-21
sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3 PE=2 SV=1 10 452 3.0E-21
sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=1 SV=1 10 452 4.0E-21
sp|Q759H4|PEX3_ASHGO Peroxisomal biogenesis factor 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PEX3 PE=3 SV=1 41 452 1.0E-19
sp|P28795|PEX3_YEAST Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1 167 452 2.0E-19
sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1 169 452 2.0E-06
sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2 169 297 4.0E-06
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GO

GO Term Description Terminal node
GO:0005779 integral component of peroxisomal membrane Yes
GO:0007031 peroxisome organization Yes
GO:0031301 integral component of organelle membrane No
GO:0016021 integral component of membrane No
GO:0031300 intrinsic component of organelle membrane No
GO:0009987 cellular process No
GO:0006996 organelle organization No
GO:0071840 cellular component organization or biogenesis No
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No
GO:0016043 cellular component organization No
GO:0005575 cellular_component No
GO:0031231 intrinsic component of peroxisomal membrane No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 15 34 19
2 176 198 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|117
MFSAARRWLRNNRTPLAVGIGVVGAGYLVGQYVVTKINDARERMSSDRIAKENLRRRFEQNQEDCTFTVLALLPT
ATANVLSVLNTEQITYEIQQMKTSARGGAKSDSAAPPSIADTTLTEEDGKSMASLHSESGIHVSQIATSSPSPFA
ASADSPVQDGRVQKSRKTKRQLWDDLAISAATRAFTLIYTLALLVMLTRIQLNLLGRRSYLSSVVSLATGAQHAP
ISLENKDDDNTDGYGCDFDTNRKYLTFSWWLLNRGWVELMHRVDSAVRTVFGGLSPRDLVTFQRYGELTMDVRRL
VEGATPEERRTSDWLRFVLPAPELEVEVIRESGILDDNAPQGGTSQPSSPALRRLLDETADLIESPAFCHVLTLV
LDAAFSLLVDGKLASEAFEMADQVRDQQRSKAVLLPKILSVLTRQAHAIGNGMPNEYLQEMETVRDLEAFAAVVY
SSNWENEMRDEGLVDAAGASRPPVARGQSGHGEESIVMVDPESSFESAWGRAMGER
Coding >Ophio5|117
ATGTTCTCCGCGGCTCGCCGCTGGTTGCGCAATAACCGGACGCCGCTTGCCGTAGGCATCGGTGTCGTTGGAGCC
GGCTACCTCGTTGGGCAGTACGTCGTCACCAAGATCAATGACGCCCGCGAGCGCATGAGCAGCGACCGCATCGCC
AAGGAGAACCTTCGTCGCCGATTCGAACAGAACCAGGAGGACTGCACGTTTACCGTCCTGGCCCTCCTCCCTACC
GCCACCGCAAACGTCCTGTCCGTCCTCAACACGGAGCAAATCACGTACGAGATTCAGCAGATGAAGACGTCGGCC
CGAGGAGGCGCAAAGTCCGACTCCGCCGCACCCCCGAGCATCGCCGATACCACTTTGACCGAGGAGGATGGCAAG
AGCATGGCCAGCCTGCACAGTGAGAGCGGCATCCACGTCAGCCAGATTGCCACGTCTTCGCCCTCGCCCTTTGCT
GCCTCGGCCGACTCGCCGGTACAGGATGGCCGCGTCCAGAAGTCGCGCAAGACCAAGAGGCAGCTCTGGGACGAC
TTGGCCATCAGCGCCGCCACCAGAGCATTTACCCTCATATACACGCTCGCTCTCCTCGTCATGTTGACACGCATT
CAGCTGAACCTTCTCGGTCGGCGGAGCTATCTCTCCAGTGTCGTGTCGCTCGCCACCGGCGCTCAGCACGCCCCC
ATCAGCCTCGAGAACAAGGATGACGACAACACCGACGGGTACGGCTGCGACTTCGACACCAATCGCAAATATTTG
ACCTTTAGCTGGTGGCTCCTTAACAGGGGCTGGGTCGAGCTGATGCACCGCGTCGACAGCGCCGTTCGCACCGTC
TTCGGCGGCCTGAGCCCCCGCGACCTCGTCACCTTCCAGAGATACGGCGAGCTGACCATGGACGTCCGGAGGTTG
GTCGAGGGCGCCACGCCCGAGGAGCGCCGGACGTCGGACTGGCTTAGGTTCGTCCTTCCCGCGCCGGAGCTCGAG
GTCGAGGTGATTCGCGAGTCCGGCATCCTCGACGACAACGCCCCTCAAGGTGGCACCTCCCAACCGTCGTCGCCG
GCCCTGCGACGGCTCCTCGACGAGACGGCCGACCTCATCGAGTCGCCGGCATTTTGCCACGTCCTGACGCTCGTC
CTCGACGCCGCCTTCTCCCTACTCGTCGACGGCAAGCTCGCGTCCGAGGCGTTTGAGATGGCCGACCAAGTCCGC
GACCAGCAGCGGTCCAAGGCCGTCCTTTTGCCCAAGATTCTCTCCGTCCTGACGCGCCAGGCTCACGCCATTGGA
AACGGCATGCCCAACGAATACCTCCAGGAGATGGAGACGGTCCGCGACCTCGAGGCCTTTGCTGCCGTCGTCTAC
TCGAGCAACTGGGAGAACGAGATGCGGGACGAGGGCCTCGTGGACGCTGCGGGGGCGTCGCGACCACCGGTGGCC
CGCGGGCAGAGTGGGCACGGCGAAGAGAGCATCGTCATGGTGGATCCCGAGAGCAGCTTCGAAAGCGCGTGGGGG
AGGGCCATGGGCGAGAGA
Transcript >Ophio5|117
ATGTTCTCCGCGGCTCGCCGCTGGTTGCGCAATAACCGGACGCCGCTTGCCGTAGGCATCGGTGTCGTTGGAGCC
GGCTACCTCGTTGGGCAGTACGTCGTCACCAAGATCAATGACGCCCGCGAGCGCATGAGCAGCGACCGCATCGCC
AAGGAGAACCTTCGTCGCCGATTCGAACAGAACCAGGAGGACTGCACGTTTACCGTCCTGGCCCTCCTCCCTACC
GCCACCGCAAACGTCCTGTCCGTCCTCAACACGGAGCAAATCACGTACGAGATTCAGCAGATGAAGACGTCGGCC
CGAGGAGGCGCAAAGTCCGACTCCGCCGCACCCCCGAGCATCGCCGATACCACTTTGACCGAGGAGGATGGCAAG
AGCATGGCCAGCCTGCACAGTGAGAGCGGCATCCACGTCAGCCAGATTGCCACGTCTTCGCCCTCGCCCTTTGCT
GCCTCGGCCGACTCGCCGGTACAGGATGGCCGCGTCCAGAAGTCGCGCAAGACCAAGAGGCAGCTCTGGGACGAC
TTGGCCATCAGCGCCGCCACCAGAGCATTTACCCTCATATACACGCTCGCTCTCCTCGTCATGTTGACACGCATT
CAGCTGAACCTTCTCGGTCGGCGGAGCTATCTCTCCAGTGTCGTGTCGCTCGCCACCGGCGCTCAGCACGCCCCC
ATCAGCCTCGAGAACAAGGATGACGACAACACCGACGGGTACGGCTGCGACTTCGACACCAATCGCAAATATTTG
ACCTTTAGCTGGTGGCTCCTTAACAGGGGCTGGGTCGAGCTGATGCACCGCGTCGACAGCGCCGTTCGCACCGTC
TTCGGCGGCCTGAGCCCCCGCGACCTCGTCACCTTCCAGAGATACGGCGAGCTGACCATGGACGTCCGGAGGTTG
GTCGAGGGCGCCACGCCCGAGGAGCGCCGGACGTCGGACTGGCTTAGGTTCGTCCTTCCCGCGCCGGAGCTCGAG
GTCGAGGTGATTCGCGAGTCCGGCATCCTCGACGACAACGCCCCTCAAGGTGGCACCTCCCAACCGTCGTCGCCG
GCCCTGCGACGGCTCCTCGACGAGACGGCCGACCTCATCGAGTCGCCGGCATTTTGCCACGTCCTGACGCTCGTC
CTCGACGCCGCCTTCTCCCTACTCGTCGACGGCAAGCTCGCGTCCGAGGCGTTTGAGATGGCCGACCAAGTCCGC
GACCAGCAGCGGTCCAAGGCCGTCCTTTTGCCCAAGATTCTCTCCGTCCTGACGCGCCAGGCTCACGCCATTGGA
AACGGCATGCCCAACGAATACCTCCAGGAGATGGAGACGGTCCGCGACCTCGAGGCCTTTGCTGCCGTCGTCTAC
TCGAGCAACTGGGAGAACGAGATGCGGGACGAGGGCCTCGTGGACGCTGCGGGGGCGTCGCGACCACCGGTGGCC
CGCGGGCAGAGTGGGCACGGCGAAGAGAGCATCGTCATGGTGGATCCCGAGAGCAGCTTCGAAAGCGCGTGGGGG
AGGGCCATGGGCGAGAGATGA
Gene >Ophio5|117
ATGTTCTCCGCGGCTCGCCGCTGGTTGCGCAATAACCGGACGCCGCTTGCCGTAGGCATCGGTGTCGTTGGAGCC
GGCTACCTCGTTGGGCAGTACGTCGTCACCAAGATCAATGACGCCCGCGAGCGCATGAGCAGCGACCGCATCGCC
AAGGAGAAGTGAGTCGTCTCAATCGAGCCGGGGCCAGTTACTGTCCCATCCCTGCTGACCACCTCCAGCCTTCGT
CGCCGATTCGAACAGAACCAGGAGGACTGCACGTTTACCGTCCTGGCCCTCCTCCCTACCGCCACCGCAAACGTC
CTGTCCGTCCTCAACACGGAGCAAATCACGTACGAGATTCAGCAGATGAAGACGTCGGCCCGAGGAGGCGCAAAG
TCCGACTCCGCCGCACCCCCGAGCATCGCCGATACCACTTTGACCGAGGAGGATGGCAAGAGCATGGCCAGCCTG
CACAGTGAGAGCGGCATCCACGTCAGCCAGATTGCCACGTCTTCGCCCTCGCCCTTTGCTGCCTCGGCCGACTCG
CCGGTACAGGATGGCCGCGTCCAGAAGTCGCGCAAGACCAAGAGGCAGCTCTGGGACGACTTGGCCATCAGCGGT
GCGCCCCTGGTCCCCCTATACCCTGAGTGACCCGTGTCCCACCAGTCTGACGCGACGTCGATAGCCGCCACCAGA
GCATTTACCCTCATATACACGCTCGCTCTCCTCGTCATGTTGACACGCATTCAGCTGAACCTTCTCGGTCGGCGG
AGCTATCTCTCCAGTGTCGTGTCGCTCGCCACCGGCGCTCAGCACGCCCCCATCAGCCTCGAGAACAAGGATGAC
GACAACACCGACGGGTACGGCTGCGACTTCGACACCAATCGCAAATATTTGACCTTTAGCTGGTGGCTCCTTAAC
AGGGGCTGGGTCGAGCTGATGCACCGCGTCGACAGCGCCGTTCGCACCGTCTTCGGCGGCCTGAGCCCCCGCGAC
CTCGTCACCTTCCAGAGATACGGCGAGCTGACCATGGACGTCCGGAGGTTGGTCGAGGGCGCCACGCCCGAGGAG
CGCCGGACGTCGGACTGGCTTAGGTTCGTCCTTCCCGCGCCGGAGCTCGAGGTCGAGGTGATTCGCGAGTCCGGC
ATCCTCGACGACAACGCCCCTCAAGGTGGCACCTCCCAACCGTCGTCGCCGGCCCTGCGACGGCTCCTCGACGAG
ACGGCCGACCTCATCGAGTCGCCGGCATTTTGCCACGTCCTGACGCTCGTCCTCGACGCCGCCTTCTCCCTACTC
GTCGACGGCAAGCTCGCGTCCGAGGCGTTTGAGATGGCCGACCAAGTCCGCGACCAGCAGCGGTCCAAGGCCGTC
CTTTTGCCCAAGATTCTCTCCGTCCTGACGCGCCAGGCTCACGCCATTGGAAACGGCATGCCCAACGAATACCTC
CAGGAGATGGAGACGGTCCGCGACCTCGAGGCCTTTGCTGCCGTCGTCTACTCGAGCAACTGGGAGAACGAGATG
CGGGACGAGGGCCTCGTGGACGCTGCGGGGGCGTCGCGACCACCGGTGGCCCGCGGGCAGAGTGGGCACGGCGAA
GAGAGCATCGTCATGGTGGATCCCGAGAGCAGCTTCGAAAGCGCGTGGGGGAGGGCCATGGGCGAGAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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