© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1169 |
| Gene name | |
| Location | scaffold_1375:263..895 |
| Strand | - |
| Gene length (bp) | 632 |
| Transcript length (bp) | 567 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04893 | Yip1 | Yip1 domain | 3.7E-13 | 50 | 183 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P8|YIP4_SCHPO | Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 | 49 | 187 | 3.0E-34 |
| sp|Q96EC8|YIPF6_HUMAN | Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2 | 25 | 178 | 7.0E-30 |
| sp|A6QLC6|YIPF6_BOVIN | Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 | 21 | 178 | 2.0E-29 |
| sp|Q28CH8|YIPF6_XENTR | Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1 | 49 | 178 | 6.0E-29 |
| sp|Q8BR70|YIPF6_MOUSE | Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 | 49 | 178 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P8|YIP4_SCHPO | Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 | 49 | 187 | 3.0E-34 |
| sp|Q96EC8|YIPF6_HUMAN | Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2 | 25 | 178 | 7.0E-30 |
| sp|A6QLC6|YIPF6_BOVIN | Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 | 21 | 178 | 2.0E-29 |
| sp|Q28CH8|YIPF6_XENTR | Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1 | 49 | 178 | 6.0E-29 |
| sp|Q8BR70|YIPF6_MOUSE | Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 | 49 | 178 | 1.0E-27 |
| sp|Q4QQU5|YIPF6_RAT | Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=1 SV=1 | 25 | 178 | 5.0E-27 |
| sp|Q54RZ2|YIPF6_DICDI | Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2 | 40 | 179 | 9.0E-27 |
| sp|Q6IQ85|YIPF6_DANRE | Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1 | 38 | 182 | 1.0E-26 |
| sp|O94348|YIP1_SCHPO | Protein transport protein yip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip1 PE=3 SV=1 | 49 | 178 | 7.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 72 | 18 |
| 2 | 79 | 96 | 17 |
| 3 | 106 | 128 | 22 |
| 4 | 141 | 163 | 22 |
| 5 | 168 | 187 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 174.48 | 95.46 | 253.51 |
| CcL | In ants, during behavior modification | 171.05 | 90.78 | 251.33 |
| CcD | In ants, recently dead | 172.91 | 90.64 | 255.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.945703 | no |
| SC16a | CcD | 0.975864 | no |
| CcL | CcD | 0.971526 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1169 MFDSERGLRGAYSNIRGAGISSTREELTGLASRIMDCEALLQSNMSSGLRDWDMWGPLIFCLLLSLLLSFTARSD QKDAVFSGVFAIVWLGEAIVTLQIKLLGGYISFAQSVCIIGYTLFPLVLAALMSAVRLHWIARIPVYAVLISWSL AAGVSILGGSGVVQNRVALAVYPLFVFYVGLGCLCFIS |
| Coding | >Ophio5|1169 ATGTTCGATTCCGAGAGAGGTCTCCGCGGCGCCTATTCCAACATTCGTGGCGCAGGTATATCTAGTACGAGGGAA GAGCTGACGGGTCTTGCGAGCCGTATCATGGATTGTGAGGCACTCCTGCAAAGCAACATGAGCTCTGGCTTGCGA GACTGGGACATGTGGGGACCGCTCATATTCTGCTTGCTTCTGAGCTTGCTCCTTAGCTTCACCGCTCGGTCCGAT CAAAAGGATGCCGTCTTCAGCGGAGTTTTCGCCATCGTATGGCTCGGTGAGGCTATTGTCACATTGCAAATCAAG CTTTTAGGCGGATATATATCATTTGCACAGAGTGTATGCATCATCGGATACACACTTTTCCCTCTTGTGTTGGCT GCTTTGATGTCTGCAGTCAGGCTTCACTGGATTGCACGAATTCCCGTTTACGCTGTCCTCATCTCGTGGTCCCTT GCCGCCGGCGTAAGCATCTTGGGCGGGAGCGGCGTTGTGCAGAATCGCGTCGCCCTAGCTGTCTACCCTCTCTTC GTGTTTTACGTCGGACTCGGCTGCCTCTGCTTTATTAGT |
| Transcript | >Ophio5|1169 ATGTTCGATTCCGAGAGAGGTCTCCGCGGCGCCTATTCCAACATTCGTGGCGCAGGTATATCTAGTACGAGGGAA GAGCTGACGGGTCTTGCGAGCCGTATCATGGATTGTGAGGCACTCCTGCAAAGCAACATGAGCTCTGGCTTGCGA GACTGGGACATGTGGGGACCGCTCATATTCTGCTTGCTTCTGAGCTTGCTCCTTAGCTTCACCGCTCGGTCCGAT CAAAAGGATGCCGTCTTCAGCGGAGTTTTCGCCATCGTATGGCTCGGTGAGGCTATTGTCACATTGCAAATCAAG CTTTTAGGCGGATATATATCATTTGCACAGAGTGTATGCATCATCGGATACACACTTTTCCCTCTTGTGTTGGCT GCTTTGATGTCTGCAGTCAGGCTTCACTGGATTGCACGAATTCCCGTTTACGCTGTCCTCATCTCGTGGTCCCTT GCCGCCGGCGTAAGCATCTTGGGCGGGAGCGGCGTTGTGCAGAATCGCGTCGCCCTAGCTGTCTACCCTCTCTTC GTGTTTTACGTCGGACTCGGCTGCCTCTGCTTTATTAGTTAA |
| Gene | >Ophio5|1169 ATGTTCGATTCCGAGAGAGGTCTCCGCGGCGCCTATTCCAACATTCGTGGCGCAGGTATATCTAGTACGAGGGAA GAGCTGACGGGTCTTGCGAGCCGTATCATGGATTGTGAGGCACTCCTGCAAAGCAACATGAGCTCTGGCTTGCGA GACTGGGACATGTGGGGACCGCTCATATTCTGCTTGCTTCTGAGCTTGCTCCTTAGCTTCACCGCTCGGTCCGAT CAAAAGGATGCCGTCTTCAGCGGAGTTTTCGCCATCGTATGGCTCGGTGAGGCTATTGTCACATTGCAAATCAAG CTTTTAGGCGGATATATGTATGAGTGCAACTTTCCGCGAATTGCTCGCTTTCAAATGACTCAACTGCTGACGGTG ATCCTAGATCATTTGCACAGAGTGTATGCATCATCGGATACACACTTTTCCCTCTTGTGTTGGCTGCTTTGATGT CTGCAGTCAGGCTTCACTGGATTGCACGAATTCCCGTTTACGCTGTCCTCATCTCGTGGTCCCTTGCCGCCGGCG TAAGCATCTTGGGCGGGAGCGGCGTTGTGCAGAATCGCGTCGCCCTAGCTGTCTACCCTCTCTTCGTGTTTTACG TCGGACTCGGCTGCCTCTGCTTTATTAGTTAA |