Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1135
Gene name
Locationscaffold_136:3973..4705
Strand-
Gene length (bp)732
Transcript length (bp)732
Coding sequence length (bp)729
Protein length (aa) 243

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00293 NUDIX NUDIX domain 4.5E-17 93 211

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1135
MIGHLNRTSPCSYPTELDRPTQRLPPQRPSPHNPKAEADQTTMAPPPANLPPSFTFTMDETVASLTEFTVPAQTW
LSQHAPRLQQRHISLAGLAVSTFVFNPAGHVLLLQRASHDSMPDRWEPPGGAVDNQDASVLHAAARELWEESGLM
VTRFRGLVDHGQEFHVFYNRNRTRCICRFAFLVDVDLCDVVRLDPQEHQAFAWATEHHVRSQTLDGHRFPITTPD
MRALILESFHLRRALDGT
Coding >Ophio5|1135
ATGATTGGCCACCTTAATCGCACCTCACCTTGCTCCTACCCTACCGAGCTTGACCGACCGACTCAGCGACTTCCT
CCTCAGCGGCCATCTCCTCACAACCCCAAAGCGGAAGCGGACCAAACAACAATGGCCCCCCCCCCGGCAAATCTG
CCGCCGTCCTTCACCTTCACCATGGACGAAACTGTCGCTTCCCTCACCGAATTCACCGTCCCAGCCCAAACCTGG
CTCTCCCAACACGCCCCCCGCCTGCAGCAACGACACATCTCCCTCGCCGGCCTCGCCGTCAGCACCTTCGTCTTC
AATCCTGCCGGCCACGTCCTCCTTCTCCAGCGCGCGAGTCATGACTCGATGCCGGATCGGTGGGAACCTCCCGGC
GGCGCCGTCGACAACCAAGACGCTTCCGTTCTGCATGCCGCTGCGCGTGAGCTGTGGGAGGAGTCGGGCCTGATG
GTTACCCGCTTCCGTGGTCTTGTCGACCATGGGCAAGAGTTTCACGTCTTTTATAATCGAAATCGCACCCGTTGC
ATCTGTCGTTTTGCCTTTCTCGTCGACGTCGACCTCTGTGACGTTGTCAGGCTGGATCCGCAGGAGCATCAGGCT
TTTGCTTGGGCTACGGAGCATCATGTCCGGTCTCAGACTTTGGACGGCCACCGTTTTCCCATCACGACTCCCGAT
ATGAGGGCTCTCATCCTCGAATCCTTTCACCTGCGGAGAGCGCTGGACGGAACC
Transcript >Ophio5|1135
ATGATTGGCCACCTTAATCGCACCTCACCTTGCTCCTACCCTACCGAGCTTGACCGACCGACTCAGCGACTTCCT
CCTCAGCGGCCATCTCCTCACAACCCCAAAGCGGAAGCGGACCAAACAACAATGGCCCCCCCCCCGGCAAATCTG
CCGCCGTCCTTCACCTTCACCATGGACGAAACTGTCGCTTCCCTCACCGAATTCACCGTCCCAGCCCAAACCTGG
CTCTCCCAACACGCCCCCCGCCTGCAGCAACGACACATCTCCCTCGCCGGCCTCGCCGTCAGCACCTTCGTCTTC
AATCCTGCCGGCCACGTCCTCCTTCTCCAGCGCGCGAGTCATGACTCGATGCCGGATCGGTGGGAACCTCCCGGC
GGCGCCGTCGACAACCAAGACGCTTCCGTTCTGCATGCCGCTGCGCGTGAGCTGTGGGAGGAGTCGGGCCTGATG
GTTACCCGCTTCCGTGGTCTTGTCGACCATGGGCAAGAGTTTCACGTCTTTTATAATCGAAATCGCACCCGTTGC
ATCTGTCGTTTTGCCTTTCTCGTCGACGTCGACCTCTGTGACGTTGTCAGGCTGGATCCGCAGGAGCATCAGGCT
TTTGCTTGGGCTACGGAGCATCATGTCCGGTCTCAGACTTTGGACGGCCACCGTTTTCCCATCACGACTCCCGAT
ATGAGGGCTCTCATCCTCGAATCCTTTCACCTGCGGAGAGCGCTGGACGGAACCTAA
Gene >Ophio5|1135
ATGATTGGCCACCTTAATCGCACCTCACCTTGCTCCTACCCTACCGAGCTTGACCGACCGACTCAGCGACTTCCT
CCTCAGCGGCCATCTCCTCACAACCCCAAAGCGGAAGCGGACCAAACAACAATGGCCCCCCCCCCGGCAAATCTG
CCGCCGTCCTTCACCTTCACCATGGACGAAACTGTCGCTTCCCTCACCGAATTCACCGTCCCAGCCCAAACCTGG
CTCTCCCAACACGCCCCCCGCCTGCAGCAACGACACATCTCCCTCGCCGGCCTCGCCGTCAGCACCTTCGTCTTC
AATCCTGCCGGCCACGTCCTCCTTCTCCAGCGCGCGAGTCATGACTCGATGCCGGATCGGTGGGAACCTCCCGGC
GGCGCCGTCGACAACCAAGACGCTTCCGTTCTGCATGCCGCTGCGCGTGAGCTGTGGGAGGAGTCGGGCCTGATG
GTTACCCGCTTCCGTGGTCTTGTCGACCATGGGCAAGAGTTTCACGTCTTTTATAATCGAAATCGCACCCGTTGC
ATCTGTCGTTTTGCCTTTCTCGTCGACGTCGACCTCTGTGACGTTGTCAGGCTGGATCCGCAGGAGCATCAGGCT
TTTGCTTGGGCTACGGAGCATCATGTCCGGTCTCAGACTTTGGACGGCCACCGTTTTCCCATCACGACTCCCGAT
ATGAGGGCTCTCATCCTCGAATCCTTTCACCTGCGGAGAGCGCTGGACGGAACCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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