Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|111
Gene name
Locationscaffold_100:17580..18792
Strand-
Gene length (bp)1212
Transcript length (bp)1023
Coding sequence length (bp)1020
Protein length (aa) 340

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04193 PQ-loop PQ loop repeat 2.0E-16 16 73
PF04193 PQ-loop PQ loop repeat 1.3E-17 206 258

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 10 306 2.0E-61
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 311 8.0E-53
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 15 309 3.0E-31
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 324 7.0E-27
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 339 8.0E-27
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 10 306 2.0E-61
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 311 8.0E-53
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 15 309 3.0E-31
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 324 7.0E-27
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 339 8.0E-27
sp|Q6ZP29|LAAT1_HUMAN Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1 13 307 7.0E-23
sp|B0BMY1|LAAT1_RAT Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1 20 312 6.0E-22
sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 16 324 5.0E-21
sp|Q8C4N4|LAAT1_MOUSE Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1 13 310 4.0E-18
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 10 31 21
2 51 73 22
3 77 99 22
4 165 187 22
5 207 229 22
6 236 258 22
7 278 300 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 19.66 8.00 31.33
CcL In ants, during behavior modification 21.21 8.92 33.49
CcD In ants, recently dead 18.06 7.22 28.90

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.830513 no
SC16a CcD 0.818398 no
CcL CcD 0.630429 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|111
MAPLTPLFPVDAEAVSGICGSISIACWVVVFSPQIIQQFRQGNADGLSVQFIAIWLLGDVFNIVGAVLQGVLPTM
TILAIYYTLADLVLLGQCFYYRGLRWRDDTAPTSNPIEEADDERTPLVGRPTAGETRPSDWTGLSPAVGHHVTEA
APEERRARSSRLQSAVWNATVIAMVCCAGIAGWLLGGRRGEPADGPDNSLELNVAGQVFGYLCAVAYMASRVPQL
LLNWRRKTTEGLSMLFFLFACLGNATYVLSILAYEPRGCVDGSCHAGAVYGRHVLVNLSWLLGSAVTLLMDLVVL
AQHLVYKTEDEDDDDGGRVSPGEDGWEGRPILERGDTDTR
Coding >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGATCCATATCCATTGCC
TGTTGGGTCGTTGTCTTTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATG
ACGATACTGGCGATATACTACACCTTGGCCGACTTGGTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGG
TGGCGCGACGACACAGCGCCAACGTCAAACCCCATCGAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGT
CCGACGGCGGGCGAGACGCGGCCATCGGACTGGACGGGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCA
GCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTGCAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTG
TGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGGCGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTG
GAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTGTGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTG
CTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTGAGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCC
ACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGAGGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTAT
GGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTGGGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTG
GCGCAGCACTTGGTCTACAAGACGGAGGACGAAGATGACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGA
TGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACGGACACTCGG
Transcript >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGATCCATATCCATTGCC
TGTTGGGTCGTTGTCTTTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATG
ACGATACTGGCGATATACTACACCTTGGCCGACTTGGTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGG
TGGCGCGACGACACAGCGCCAACGTCAAACCCCATCGAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGT
CCGACGGCGGGCGAGACGCGGCCATCGGACTGGACGGGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCA
GCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTGCAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTG
TGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGGCGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTG
GAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTGTGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTG
CTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTGAGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCC
ACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGAGGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTAT
GGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTGGGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTG
GCGCAGCACTTGGTCTACAAGACGGAGGACGAAGATGACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGA
TGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACGGACACTCGGTGA
Gene >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGGTAAGGATACCCCTTC
CCTCGCCGGCTCGGCTCCATGGGACACAAACTGACGCGTGCTGCCCCTAGATCCATATCCATTGCCTGTTGGGGT
CAGTGCCGTGCGGTGCTCAAGAAAAATCAGGACCCGAGGCTGACGATGCACCCTCCTCCCGAGCAGTCGTTGTCT
TTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAGTTCATCGCCATATGGC
TGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATGGCAAGGCGCCCGTGTC
GTACCGACGAGAGGTCCGAGGGCTGACGAGACGGGGCAGACGATACTGGCGATATACTACACCTTGGCCGACTTG
GTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGGTGGCGCGACGACACAGCGCCAACGTCAAACCCCATC
GAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGTCCGACGGCGGGCGAGACGCGGCCATCGGACTGGACG
GGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCAGCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTG
CAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTGTGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGG
CGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTGGAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTG
TGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTGCTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTG
AGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCCACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGA
GGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTATGGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTG
GGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTGGCGCAGCACTTGGTCTACAAGACGGAGGACGAAGAT
GACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGATGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACG
GACACTCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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