Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|111
Gene name
Locationscaffold_100:17580..18792
Strand-
Gene length (bp)1212
Transcript length (bp)1023
Coding sequence length (bp)1020
Protein length (aa) 340

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04193 PQ-loop PQ loop repeat 2.0E-16 16 73
PF04193 PQ-loop PQ loop repeat 1.3E-17 206 258

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 10 306 2.0E-61
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 311 8.0E-53
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 15 309 3.0E-31
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 324 7.0E-27
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 339 8.0E-27
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 10 306 2.0E-61
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 311 8.0E-53
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 15 309 3.0E-31
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 324 7.0E-27
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 339 8.0E-27
sp|Q6ZP29|LAAT1_HUMAN Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1 13 307 7.0E-23
sp|B0BMY1|LAAT1_RAT Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1 20 312 6.0E-22
sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 16 324 5.0E-21
sp|Q8C4N4|LAAT1_MOUSE Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1 13 310 4.0E-18
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 10 31 21
2 51 73 22
3 77 99 22
4 165 187 22
5 207 229 22
6 236 258 22
7 278 300 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|111
MAPLTPLFPVDAEAVSGICGSISIACWVVVFSPQIIQQFRQGNADGLSVQFIAIWLLGDVFNIVGAVLQGVLPTM
TILAIYYTLADLVLLGQCFYYRGLRWRDDTAPTSNPIEEADDERTPLVGRPTAGETRPSDWTGLSPAVGHHVTEA
APEERRARSSRLQSAVWNATVIAMVCCAGIAGWLLGGRRGEPADGPDNSLELNVAGQVFGYLCAVAYMASRVPQL
LLNWRRKTTEGLSMLFFLFACLGNATYVLSILAYEPRGCVDGSCHAGAVYGRHVLVNLSWLLGSAVTLLMDLVVL
AQHLVYKTEDEDDDDGGRVSPGEDGWEGRPILERGDTDTR
Coding >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGATCCATATCCATTGCC
TGTTGGGTCGTTGTCTTTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATG
ACGATACTGGCGATATACTACACCTTGGCCGACTTGGTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGG
TGGCGCGACGACACAGCGCCAACGTCAAACCCCATCGAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGT
CCGACGGCGGGCGAGACGCGGCCATCGGACTGGACGGGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCA
GCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTGCAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTG
TGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGGCGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTG
GAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTGTGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTG
CTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTGAGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCC
ACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGAGGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTAT
GGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTGGGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTG
GCGCAGCACTTGGTCTACAAGACGGAGGACGAAGATGACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGA
TGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACGGACACTCGG
Transcript >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGATCCATATCCATTGCC
TGTTGGGTCGTTGTCTTTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATG
ACGATACTGGCGATATACTACACCTTGGCCGACTTGGTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGG
TGGCGCGACGACACAGCGCCAACGTCAAACCCCATCGAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGT
CCGACGGCGGGCGAGACGCGGCCATCGGACTGGACGGGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCA
GCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTGCAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTG
TGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGGCGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTG
GAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTGTGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTG
CTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTGAGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCC
ACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGAGGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTAT
GGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTGGGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTG
GCGCAGCACTTGGTCTACAAGACGGAGGACGAAGATGACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGA
TGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACGGACACTCGGTGA
Gene >Ophio5|111
ATGGCGCCTCTCACGCCGCTCTTCCCGGTCGACGCCGAGGCCGTCTCCGGCATTTGCGGGTAAGGATACCCCTTC
CCTCGCCGGCTCGGCTCCATGGGACACAAACTGACGCGTGCTGCCCCTAGATCCATATCCATTGCCTGTTGGGGT
CAGTGCCGTGCGGTGCTCAAGAAAAATCAGGACCCGAGGCTGACGATGCACCCTCCTCCCGAGCAGTCGTTGTCT
TTTCACCACAGATCATCCAACAGTTCCGCCAAGGAAATGCCGACGGGTTGTCGGTGCAGTTCATCGCCATATGGC
TGCTGGGAGACGTCTTCAACATAGTCGGAGCTGTTCTGCAGGGAGTTCTCCCGACCATGGCAAGGCGCCCGTGTC
GTACCGACGAGAGGTCCGAGGGCTGACGAGACGGGGCAGACGATACTGGCGATATACTACACCTTGGCCGACTTG
GTGCTGCTGGGTCAGTGCTTCTATTACCGCGGCTTGCGGTGGCGCGACGACACAGCGCCAACGTCAAACCCCATC
GAGGAAGCCGACGACGAGCGGACGCCACTGGTCGGTCGTCCGACGGCGGGCGAGACGCGGCCATCGGACTGGACG
GGCCTCTCGCCGGCTGTGGGTCACCATGTCACCGAGGCAGCCCCGGAGGAGCGGCGGGCGCGGTCAAGTCGGTTG
CAGTCAGCCGTGTGGAACGCAACCGTCATCGCCATGGTGTGCTGTGCCGGCATCGCCGGCTGGCTCCTAGGCGGG
CGCAGAGGCGAGCCGGCAGACGGGCCGGACAACAGCCTGGAGCTCAATGTGGCGGGCCAGGTCTTCGGCTACCTG
TGTGCCGTGGCATACATGGCGTCGCGCGTGCCGCAGCTGCTGCTCAACTGGCGGCGCAAGACGACTGAGGGCCTG
AGCATGCTGTTCTTCCTCTTCGCCTGTCTGGGCAACGCCACGTACGTCTTATCCATCCTGGCCTATGAGCCGAGA
GGTTGCGTCGACGGCTCATGCCACGCGGGTGCCGTCTATGGGCGACACGTGCTCGTCAATCTGAGCTGGTTGTTG
GGTAGCGCAGTGACGCTGTTGATGGACCTGGTCGTCTTGGCGCAGCACTTGGTCTACAAGACGGAGGACGAAGAT
GACGACGACGGAGGCCGGGTGAGTCCGGGTGAAGACGGATGGGAAGGTCGGCCGATACTGGAGCGGGGCGACACG
GACACTCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail