Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|1087
Gene name
Location	scaffold_1332:570..1198
Strand	+
Gene length (bp)	628
Transcript length (bp)	426
Coding sequence length (bp)	423
Protein length (aa)	141

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	68	90	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	49.08	18.26	79.91
CcL	In ants, during behavior modification	18.38	4.24	32.52
CcD	In ants, recently dead	11.48	1.96	21.01

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.005848	yes
SC16a	CcD	0.000535	yes
CcL	CcD	0.262009	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|1087 MSSLIKASPTWKLLIYLSLKSKNKRLDSSQLAATRLQYSNQPRTLSPVPLYSIGRQLSSGSLVGLISGVIITIFS QAIALLATSVILSYYMLALRLNIKTLDLLSIVPRRWRSKLFSDFRRDKWFFASFICTFILTICVHI
Coding	>Ophio5\|1087 ATGAGTTCTCTTATTAAGGCATCTCCTACTTGGAAACTCCTTATATATTTATCGCTGAAATCAAAAAACAAACGT CTCGATTCTAGTCAGCTAGCTGCTACGCGACTCCAATATTCCAATCAACCGCGAACTTTGAGTCCTGTGCCATTA TACTCAATTGGTCGGCAGCTATCTAGCGGAAGTTTAGTCGGGCTTATTTCGGGAGTCATTATCACAATTTTTTCT CAAGCTATAGCTCTCCTTGCGACCTCGGTAATTTTATCTTATTATATGCTTGCTTTACGGCTTAATATTAAGACC CTCGATCTGCTTAGTATCGTTCCCAGACGCTGGCGGAGCAAATTATTCAGCGACTTTCGTAGAGACAAATGGTTC TTTGCTTCCTTTATATGTACTTTCATTCTCACTATTTGCGTTCATATT
Transcript	>Ophio5\|1087 ATGAGTTCTCTTATTAAGGCATCTCCTACTTGGAAACTCCTTATATATTTATCGCTGAAATCAAAAAACAAACGT CTCGATTCTAGTCAGCTAGCTGCTACGCGACTCCAATATTCCAATCAACCGCGAACTTTGAGTCCTGTGCCATTA TACTCAATTGGTCGGCAGCTATCTAGCGGAAGTTTAGTCGGGCTTATTTCGGGAGTCATTATCACAATTTTTTCT CAAGCTATAGCTCTCCTTGCGACCTCGGTAATTTTATCTTATTATATGCTTGCTTTACGGCTTAATATTAAGACC CTCGATCTGCTTAGTATCGTTCCCAGACGCTGGCGGAGCAAATTATTCAGCGACTTTCGTAGAGACAAATGGTTC TTTGCTTCCTTTATATGTACTTTCATTCTCACTATTTGCGTTCATATTTAG
Gene	>Ophio5\|1087 ATGAGTTCTCTTATTAAGGCATCTCCTACTTGGAAACGTTATTATAGCCGCCTACTAGTAAAGACTAGACCGAGT ATTTACGCTGGGACAGTCCTTATATATTTATCGCTGAAATCAAAAAACAAACGTCTCGATTCTAGTCAGCTAGCT GCTACGCGACTCCAATATTCCAATCAACCGCGAACTTTGAGTCCTGTGCCATTATACTCAATTGGTCGGCAGCTA TCTAGCGGAAGTTTAGTCGGTGCGTACCTTTTGCAATAGCACTAACATTACTGAACGTGCTGCTCTCCTATTATC GACCTTTCTAAAATTTATCCCAGGGCTTATTTCGGGAGTCATTATCACAATTTTTTCTCAAGCTATAGCTCTCCT TGCGACCTCGGTAATTTTATCTTATTATATGGTGCGATTATTTGTTAAAATCTATCCGCCTATATTCTCTTTACT AACTATACCTATACAACATTCAAAGCTTGCTTTACGGCTTAATATTAAGACCCTCGATCTGCTTAGTATCGTTCC CAGACGCTGGCGGAGCAAATTATTCAGCGACTTTCGTAGAGACAAATGGTTCTTTGCTTCCTTTATATGTACTTT CATTCTCACTATTTGCGTTCATATTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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