© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|1072 |
| Gene name | |
| Location | scaffold_133:8820..11156 |
| Strand | - |
| Gene length (bp) | 2336 |
| Transcript length (bp) | 2127 |
| Coding sequence length (bp) | 2124 |
| Protein length (aa) | 708 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00520 | Ion_trans | Ion transport protein | 1.6E-07 | 323 | 539 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12324|YVC1_YEAST | Calcium channel YVC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YVC1 PE=1 SV=2 | 236 | 585 | 2.0E-15 |
| sp|Q5A2J7|YVC1_CANAL | Calcium channel YVC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YVC1 PE=2 SV=1 | 251 | 705 | 4.0E-15 |
| sp|Q8R455|TRPM8_RAT | Transient receptor potential cation channel subfamily M member 8 OS=Rattus norvegicus GN=Trpm8 PE=1 SV=4 | 242 | 579 | 1.0E-07 |
| sp|P79100|TRPC4_BOVIN | Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2 | 345 | 574 | 6.0E-07 |
| sp|Q9QUQ5|TRPC4_MOUSE | Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1 | 345 | 574 | 6.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12324|YVC1_YEAST | Calcium channel YVC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YVC1 PE=1 SV=2 | 236 | 585 | 2.0E-15 |
| sp|Q5A2J7|YVC1_CANAL | Calcium channel YVC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YVC1 PE=2 SV=1 | 251 | 705 | 4.0E-15 |
| sp|Q8R455|TRPM8_RAT | Transient receptor potential cation channel subfamily M member 8 OS=Rattus norvegicus GN=Trpm8 PE=1 SV=4 | 242 | 579 | 1.0E-07 |
| sp|P79100|TRPC4_BOVIN | Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2 | 345 | 574 | 6.0E-07 |
| sp|Q9QUQ5|TRPC4_MOUSE | Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1 | 345 | 574 | 6.0E-07 |
| sp|Q9UBN4|TRPC4_HUMAN | Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1 | 345 | 574 | 7.0E-07 |
| sp|O35119|TRPC4_RAT | Short transient receptor potential channel 4 OS=Rattus norvegicus GN=Trpc4 PE=1 SV=2 | 345 | 574 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006811 | ion transport | Yes |
| GO:0005216 | ion channel activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 320 | 337 | 17 |
| 2 | 378 | 400 | 22 |
| 3 | 422 | 444 | 22 |
| 4 | 451 | 473 | 22 |
| 5 | 512 | 534 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|1072 MLRLSRAFDSTSPGLASPRLAHLISPPPRFTLCSFIQFPLVVNEIFRMPIRIKARRPQPVRDPSPVSARDDFELP EINSKDSFRQVASKLSAYLIDAIDMPSTFEQLRTTVAGNCIRELVDHLHNNRLNLATVHALLALKWHYAADHEHS GLNQARSYACEIVAWRFLARLSEQEAMDFCLYEIPEVDDDASPQPDSEPLETAPLLSRATIPSYGMGSSAKRIQL QGSLQHLTANGDGDDDVDPTSAFRGLNALEIAAVADAKRFLSQSVVQKIVSGIWNGDIVFWDSLSVRATKRPRFY DPESSDPFSRLRVPKYLKSWEVLFFAVFLCLYYTVLVSRVESHITAAEAVLFVWIAAFAYDELSEWLDAGSIFYA TDIWNLFDIVMIFIGSIFAILRVVGLLRGDDAIIGLAFDVLSLEALFMMPRICSILSLSPYWGTLIPCLKEMGKD FVKFMVLVVIVYLGFLTTFSLVGRDSFPFSKMTGILTNIFFGSSSVGLDIMSEIDPFFGPPLMLIFVTLTSILLM GSLTGMLSNSFSRVITHAKEEYLYVYSVYVLEASTSNRLTHFYPPFNLVALVVFRPFRLFWFSTKDERFRAGRIV LLKMTHLPVVTAIRFYELLQRKFTNPSNRPVLKGPRRGERRAQGATRGMPTSGQGRRQWRSRESRDEERRDEDDA EAPTLLEVQVTEMNKKIDRLMEMVSQACQADNG |
| Coding | >Ophio5|1072 ATGCTTCGCCTCAGCCGCGCCTTCGACAGCACCTCACCTGGCCTCGCCTCACCTCGACTCGCCCATCTCATCTCA CCCCCTCCTCGATTCACCCTTTGCTCTTTTATCCAGTTTCCCCTCGTCGTCAATGAGATCTTCAGGATGCCCATC CGCATCAAGGCACGACGGCCTCAGCCGGTCCGCGACCCGAGCCCAGTCTCAGCCCGCGATGATTTCGAACTACCC GAGATAAATAGCAAGGATTCATTTCGTCAAGTTGCCTCCAAGCTCTCGGCTTATCTCATCGATGCCATCGACATG CCCAGCACCTTCGAGCAACTCAGGACCACTGTTGCCGGCAACTGCATCCGCGAACTTGTCGATCACCTACACAAT AATCGCTTGAATCTCGCCACCGTCCATGCTCTTCTCGCCCTGAAGTGGCACTACGCCGCCGATCACGAGCACTCC GGCCTCAACCAGGCGCGTTCGTATGCCTGCGAGATTGTCGCCTGGCGCTTTCTGGCTCGTCTCTCCGAGCAAGAG GCCATGGACTTTTGTCTGTACGAAATACCCGAAGTTGACGATGATGCATCGCCTCAGCCCGACAGCGAGCCTTTG GAGACGGCGCCGCTACTGTCAAGAGCCACAATCCCGTCGTATGGCATGGGCAGCTCGGCCAAGCGGATACAGCTG CAAGGGTCCCTCCAACACCTGACGGCCAATGGCGACGGTGACGATGACGTTGATCCGACGTCGGCCTTTAGGGGC CTCAATGCCCTCGAGATCGCCGCCGTCGCCGACGCCAAGCGTTTCCTCAGCCAGTCGGTCGTGCAAAAGATTGTC AGCGGCATCTGGAATGGCGACATCGTCTTCTGGGACTCGCTGTCGGTTCGTGCCACCAAGAGGCCTCGCTTCTAC GACCCTGAGAGCTCGGATCCCTTCTCCCGTCTACGCGTTCCGAAATATCTCAAGAGCTGGGAAGTTCTCTTCTTT GCCGTCTTCCTCTGTCTCTATTACACCGTCCTAGTCTCTCGCGTTGAGAGCCACATCACCGCTGCCGAGGCTGTC TTGTTCGTCTGGATCGCTGCCTTCGCCTACGATGAGCTGAGCGAGTGGCTCGATGCCGGCTCCATCTTCTACGCG ACCGACATTTGGAACCTATTTGACATCGTCATGATCTTCATTGGCTCCATATTTGCTATTCTCAGGGTAGTCGGG CTCCTTCGCGGCGACGACGCCATCATCGGCCTAGCCTTTGACGTGCTTTCGCTCGAGGCTCTTTTCATGATGCCG CGCATCTGCTCCATCCTGAGCTTGAGTCCGTATTGGGGAACGCTAATTCCCTGCCTAAAGGAGATGGGCAAGGAC TTTGTCAAGTTTATGGTTCTCGTCGTCATCGTATATCTGGGCTTTTTGACCACCTTTTCCCTCGTCGGACGCGAT TCATTCCCCTTTTCCAAGATGACGGGTATCCTGACCAATATCTTTTTCGGCTCGAGCTCCGTTGGTCTGGATATC ATGAGCGAGATCGATCCTTTCTTCGGGCCGCCCCTGATGCTCATCTTTGTTACCCTGACTTCGATCCTGCTGATG GGGTCTCTGACGGGTATGCTGTCCAACAGTTTTTCGCGCGTCATAACGCACGCCAAGGAGGAATATCTCTACGTC TATAGCGTCTACGTTCTCGAAGCATCGACAAGCAACCGGCTTACCCACTTCTACCCACCATTCAACCTCGTCGCC CTCGTCGTCTTCCGTCCCTTCCGTCTCTTTTGGTTCTCCACTAAGGACGAGAGATTCCGGGCCGGTCGAATCGTG TTGCTGAAGATGACGCACCTTCCCGTCGTGACGGCCATTAGGTTCTACGAGCTTCTCCAGCGGAAGTTTACCAAT CCGTCAAACCGGCCCGTCCTCAAGGGTCCGCGCCGGGGGGAGCGAAGGGCGCAGGGTGCTACGCGGGGAATGCCG ACTTCTGGTCAAGGCCGGCGACAGTGGCGTTCTCGGGAGTCGAGGGACGAGGAGAGGAGGGACGAGGATGATGCG GAGGCGCCGACGCTGCTGGAGGTGCAGGTGACTGAGATGAACAAGAAGATTGACAGGCTCATGGAAATGGTCTCG CAGGCATGCCAGGCAGACAACGGG |
| Transcript | >Ophio5|1072 ATGCTTCGCCTCAGCCGCGCCTTCGACAGCACCTCACCTGGCCTCGCCTCACCTCGACTCGCCCATCTCATCTCA CCCCCTCCTCGATTCACCCTTTGCTCTTTTATCCAGTTTCCCCTCGTCGTCAATGAGATCTTCAGGATGCCCATC CGCATCAAGGCACGACGGCCTCAGCCGGTCCGCGACCCGAGCCCAGTCTCAGCCCGCGATGATTTCGAACTACCC GAGATAAATAGCAAGGATTCATTTCGTCAAGTTGCCTCCAAGCTCTCGGCTTATCTCATCGATGCCATCGACATG CCCAGCACCTTCGAGCAACTCAGGACCACTGTTGCCGGCAACTGCATCCGCGAACTTGTCGATCACCTACACAAT AATCGCTTGAATCTCGCCACCGTCCATGCTCTTCTCGCCCTGAAGTGGCACTACGCCGCCGATCACGAGCACTCC GGCCTCAACCAGGCGCGTTCGTATGCCTGCGAGATTGTCGCCTGGCGCTTTCTGGCTCGTCTCTCCGAGCAAGAG GCCATGGACTTTTGTCTGTACGAAATACCCGAAGTTGACGATGATGCATCGCCTCAGCCCGACAGCGAGCCTTTG GAGACGGCGCCGCTACTGTCAAGAGCCACAATCCCGTCGTATGGCATGGGCAGCTCGGCCAAGCGGATACAGCTG CAAGGGTCCCTCCAACACCTGACGGCCAATGGCGACGGTGACGATGACGTTGATCCGACGTCGGCCTTTAGGGGC CTCAATGCCCTCGAGATCGCCGCCGTCGCCGACGCCAAGCGTTTCCTCAGCCAGTCGGTCGTGCAAAAGATTGTC AGCGGCATCTGGAATGGCGACATCGTCTTCTGGGACTCGCTGTCGGTTCGTGCCACCAAGAGGCCTCGCTTCTAC GACCCTGAGAGCTCGGATCCCTTCTCCCGTCTACGCGTTCCGAAATATCTCAAGAGCTGGGAAGTTCTCTTCTTT GCCGTCTTCCTCTGTCTCTATTACACCGTCCTAGTCTCTCGCGTTGAGAGCCACATCACCGCTGCCGAGGCTGTC TTGTTCGTCTGGATCGCTGCCTTCGCCTACGATGAGCTGAGCGAGTGGCTCGATGCCGGCTCCATCTTCTACGCG ACCGACATTTGGAACCTATTTGACATCGTCATGATCTTCATTGGCTCCATATTTGCTATTCTCAGGGTAGTCGGG CTCCTTCGCGGCGACGACGCCATCATCGGCCTAGCCTTTGACGTGCTTTCGCTCGAGGCTCTTTTCATGATGCCG CGCATCTGCTCCATCCTGAGCTTGAGTCCGTATTGGGGAACGCTAATTCCCTGCCTAAAGGAGATGGGCAAGGAC TTTGTCAAGTTTATGGTTCTCGTCGTCATCGTATATCTGGGCTTTTTGACCACCTTTTCCCTCGTCGGACGCGAT TCATTCCCCTTTTCCAAGATGACGGGTATCCTGACCAATATCTTTTTCGGCTCGAGCTCCGTTGGTCTGGATATC ATGAGCGAGATCGATCCTTTCTTCGGGCCGCCCCTGATGCTCATCTTTGTTACCCTGACTTCGATCCTGCTGATG GGGTCTCTGACGGGTATGCTGTCCAACAGTTTTTCGCGCGTCATAACGCACGCCAAGGAGGAATATCTCTACGTC TATAGCGTCTACGTTCTCGAAGCATCGACAAGCAACCGGCTTACCCACTTCTACCCACCATTCAACCTCGTCGCC CTCGTCGTCTTCCGTCCCTTCCGTCTCTTTTGGTTCTCCACTAAGGACGAGAGATTCCGGGCCGGTCGAATCGTG TTGCTGAAGATGACGCACCTTCCCGTCGTGACGGCCATTAGGTTCTACGAGCTTCTCCAGCGGAAGTTTACCAAT CCGTCAAACCGGCCCGTCCTCAAGGGTCCGCGCCGGGGGGAGCGAAGGGCGCAGGGTGCTACGCGGGGAATGCCG ACTTCTGGTCAAGGCCGGCGACAGTGGCGTTCTCGGGAGTCGAGGGACGAGGAGAGGAGGGACGAGGATGATGCG GAGGCGCCGACGCTGCTGGAGGTGCAGGTGACTGAGATGAACAAGAAGATTGACAGGCTCATGGAAATGGTCTCG CAGGCATGCCAGGCAGACAACGGGTGA |
| Gene | >Ophio5|1072 ATGCTTCGCCTCAGCCGCGCCTTCGACAGCACCTCACCTGGCCTCGCCTCACCTCGACTCGCCCATCTCATCTCA CCCCCTCCTCGATTCACCCTTTGCTCTTTTATCCAGTTTCCCCTCGTCGTCAATGAGGTCGACGAGGCCTACGTC CAGCACCTACCACCTCCCTGGTACCTACCTAGATCTTCAGGATGCCCATCCGCATCAAGGCACGACGGCCTCAGC CGGTCCGCGACCCGAGCCCAGTCTCAGCCCGCGATGATTTCGAACTACCCGAGATAAATAGCAAGGATTCATTTC GTCAAGTTGCCTCCAAGCTCTCGGCGCAAGTCACGAGCTCGCCCGATCAAGCCCTTTCGCTTCTGACTATCGTCC AGTTATCTCATCGATGCCATCGACATGCCCAGCACCTTCGAGCAACTCAGGACCACTGTTGCCGGCAACTGCATC CGCGAACTTGTCGATCACCTACACAATAATCGCTTGAATCTCGCCACCGTCCATGCTCTTCTGTCAGTCTTTTCA TCCTCCTCCGTCCTTGTCTGTCCTGACTTCTCAACGCAGCGCCCTGAAGTGGCACTACGCCGCCGATCACGAGCA CTCCGGCCTCAACCAGGCGCGTTCGTATGCCTGCGAGATTGTCGCCTGGCGCTTTCTGGCTCGTCTCTCCGAGCA AGAGGCCATGGACTTTTGTCTGTACGAAATACCCGAAGTTGACGATGATGCATCGCCTCAGCCCGACAGCGAGCC TTTGGAGACGGCGCCGCTACTGTCAAGAGCCACAATCCCGTCGTATGGCATGGGCAGCTCGGCCAAGCGGATACA GCTGCAAGGGTCCCTCCAACACCTGACGGCCAATGGCGACGGTGACGATGACGTTGATCCGACGTCGGCCTTTAG GGGCCTCAATGCCCTCGAGATCGCCGCCGTCGCCGACGCCAAGCGTTTCCTCAGCCAGTCGGTCGTGCAAAAGAT TGTCAGCGGCATCTGGAATGGCGACATCGTCTTCTGGGACTCGCTGTCGGTTCGTGCCACCAAGAGGCCTCGCTT CTACGACCCTGAGAGCTCGGATCCCTTCTCCCGTCTACGCGTTCCGAAATATCTCAAGAGCTGGGAAGTTCTCTT CTTTGCCGTCTTCCTCTGTCTCTATTACACCGTCCTAGTCTCTCGCGTTGAGAGCCACATCACCGCTGCCGAGGC TGTCTTGTTCGTCTGGATCGCTGCCTTCGCCTACGATGAGCTGAGCGAGTGGCTCGATGCCGGCTCCATCTTCTA CGCGACCGACATTTGGAACCTATTTGACATCGTCATGATCTTCATTGGCTCCATATTTGCTATTCTCAGTGAGTA CCCAGGTGCCGAATCATCCCGCGTCTTGTCCGCTGACGCGCCTCCAAGGGGTAGTCGGGCTCCTTCGCGGCGACG ACGCCATCATCGGCCTAGCCTTTGACGTGCTTTCGCTCGAGGCTCTTTTCATGATGCCGCGCATCTGCTCCATCC TGAGCTTGAGTCCGTATTGGGGAACGCTAATTCCCTGCCTAAAGGAGATGGGCAAGGACTTTGTCAAGTTTATGG TTCTCGTCGTCATCGTATATCTGGGCTTTTTGACCACCTTTTCCCTCGTCGGACGCGATTCATTCCCCTTTTCCA AGATGACGGGTATCCTGACCAATATCTTTTTCGGCTCGAGCTCCGTTGGTCTGGATATCATGAGCGAGATCGATC CTTTCTTCGGGCCGCCCCTGATGCTCATCTTTGTTACCCTGACTTCGATCCTGCTGATGGGGTCTCTGACGGGTA TGCTGTCCAACAGTTTTTCGCGCGTCATAACGCACGCCAAGGAGGAATATCTCTACGTCTATAGCGTCTACGTTC TCGAAGCATCGACAAGCAACCGGCTTACCCACTTCTACCCACCATTCAACCTCGTCGCCCTCGTCGTCTTCCGTC CCTTCCGTCTCTTTTGGTTCTCCACTAAGGACGAGAGATTCCGGGCCGGTCGAATCGTGTTGCTGAAGATGACGC ACCTTCCCGTCGTGACGGCCATTAGGTTCTACGAGCTTCTCCAGCGGAAGTTTACCAATCCGTCAAACCGGCCCG TCCTCAAGGGTCCGCGCCGGGGGGAGCGAAGGGCGCAGGGTGCTACGCGGGGAATGCCGACTTCTGGTCAAGGCC GGCGACAGTGGCGTTCTCGGGAGTCGAGGGACGAGGAGAGGAGGGACGAGGATGATGCGGAGGCGCCGACGCTGC TGGAGGTGCAGGTGACTGAGATGAACAAGAAGATTGACAGGCTCATGGAAATGGTCTCGCAGGCATGCCAGGCAG ACAACGGGTGA |