Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1058
Gene name
Locationscaffold_132:26432..27069
Strand-
Gene length (bp)637
Transcript length (bp)315
Coding sequence length (bp)312
Protein length (aa) 104

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02939 UcrQ UcrQ family 9.2E-34 24 99

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P48503|QCR8_NEUCR Cytochrome b-c1 complex subunit 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=qcr-8 PE=1 SV=1 1 104 3.0E-39
sp|P08525|QCR8_YEAST Cytochrome b-c1 complex subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QCR8 PE=1 SV=2 20 100 2.0E-17
sp|P50523|QCR8_SCHPO Cytochrome b-c1 complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr8 PE=3 SV=1 19 97 1.0E-16
sp|P49346|QCR8_KLULA Cytochrome b-c1 complex subunit 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=QCR8 PE=3 SV=1 20 100 2.0E-13

GO

GO Term Description Terminal node
GO:0005750 mitochondrial respiratory chain complex III Yes
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c Yes
GO:1990204 oxidoreductase complex No
GO:0008150 biological_process No
GO:0032991 protein-containing complex No
GO:0015980 energy derivation by oxidation of organic compounds No
GO:0098798 mitochondrial protein-containing complex No
GO:0045333 cellular respiration No
GO:0022904 respiratory electron transport chain No
GO:1902494 catalytic complex No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:0009060 aerobic respiration No
GO:0098796 membrane protein complex No
GO:0009987 cellular process No
GO:0019646 aerobic electron transport chain No
GO:0005575 cellular_component No
GO:0098803 respiratory chain complex No
GO:0022900 electron transport chain No
GO:0098800 inner mitochondrial membrane protein complex No
GO:0006091 generation of precursor metabolites and energy No
GO:0045275 respiratory chain complex III No
GO:1902495 transmembrane transporter complex No
GO:0070069 cytochrome complex No
GO:1990351 transporter complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 67 85 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1058
MRPTRFLLSDAAPDWRTGNYLGPWGAMGGTKQKGIIHFGVSANRQNAMAGAGHDAIFNTFRRTKSQIVYWLLPMV
TGYYVLNWAIERNEYLNSKAGRAEFGDAE
Coding >Ophio5|1058
ATGAGACCGACACGATTTCTGCTTAGCGATGCCGCTCCGGACTGGAGGACTGGCAACTATCTCGGCCCTTGGGGA
GCGATGGGCGGCACGAAGCAGAAAGGCATCATTCATTTTGGCGTCTCGGCCAATCGTCAGAACGCCATGGCCGGC
GCGGGTCACGACGCCATCTTCAACACCTTTCGCCGCACGAAGTCGCAGATCGTCTACTGGTTGTTGCCCATGGTC
ACCGGCTACTATGTCCTGAATTGGGCAATCGAGCGCAACGAGTATCTCAACTCCAAGGCTGGCCGCGCTGAGTTT
GGTGATGCTGAG
Transcript >Ophio5|1058
ATGAGACCGACACGATTTCTGCTTAGCGATGCCGCTCCGGACTGGAGGACTGGCAACTATCTCGGCCCTTGGGGA
GCGATGGGCGGCACGAAGCAGAAAGGCATCATTCATTTTGGCGTCTCGGCCAATCGTCAGAACGCCATGGCCGGC
GCGGGTCACGACGCCATCTTCAACACCTTTCGCCGCACGAAGTCGCAGATCGTCTACTGGTTGTTGCCCATGGTC
ACCGGCTACTATGTCCTGAATTGGGCAATCGAGCGCAACGAGTATCTCAACTCCAAGGCTGGCCGCGCTGAGTTT
GGTGATGCTGAGTAG
Gene >Ophio5|1058
ATGAGACCGACACGATTTCTGCTTAGCGATGCCGCTCCGGACTGGAGGACTGGCAAGTACGTGAGCCCCAGCCTC
TATCCCCAGGGCGAGGACCGAGAGACCGGCTAGCTGCTCCTGGGGATGTGGAAGCTAATTCGCGTTACTGCAGCT
ATCTCGGCCCTTGGGGAGCGATGGGTGAGTTCTCTCCTAGTTGCTTTCGAAACATGGCGAATCCGAGCATCGGTC
TTGGGATGGCTACGGTCCCCCCCCCCGTCCCCCTTCCGAAGCTGCAAGCGGACGAGCGAGGCCCTCAGCCAAGTC
TACGCAGAGTGGTGGGAACACGGTGCTGAGAAATTGGCAGGCGGCACGAAGCAGAAAGGCATCATTCATTTTGGC
GTCTCGGCCAATCGTCAGAACGCCATGGCCGGCGCGGGTCACGACGCCATCTTCAACACCTTTCGCCGCACGAAG
TCGCAGATCGTCTACTGGTTGTTGCCCATGGTCACCGGCTACTATGTCCTGAATTGGGCAATCGAGCGGTAGGAC
ATGCTCTCTTTCAGCTGGGGTGAAGGAAGACGGTCAGCGCTGACATTGGCTTGTCAGCAACGAGTATCTCAACTC
CAAGGCTGGCCGCGCTGAGTTTGGTGATGCTGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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