Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|105
Gene name
Location	scaffold_100:4196..5542
Strand	-
Gene length (bp)	1346
Transcript length (bp)	1134
Coding sequence length (bp)	1131
Protein length (aa)	377

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00264	Tyrosinase	Common central domain of tyrosinase	2.2E-46	96	319

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P07524\|TYRO_STRAT	Tyrosinase OS=Streptomyces antibioticus GN=melC2 PE=3 SV=2	58	324	5.0E-14
sp\|P06845\|TYRO_STRGA	Tyrosinase OS=Streptomyces glaucescens GN=melC2 PE=1 SV=3	58	322	3.0E-12
sp\|P55023\|TYRO_STRLN	Tyrosinase OS=Streptomyces lincolnensis GN=melC2 PE=3 SV=2	58	320	1.0E-11
sp\|P55022\|TYRO_STRGB	Tyrosinase OS=Streptomyces galbus GN=melC2 PE=3 SV=2	58	322	1.0E-11
sp\|B1VTI5\|GRIF_STRGG	Grixazone synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=griF PE=1 SV=1	279	327	3.0E-08

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P07524\|TYRO_STRAT	Tyrosinase OS=Streptomyces antibioticus GN=melC2 PE=3 SV=2	58	324	5.0E-14
sp\|P06845\|TYRO_STRGA	Tyrosinase OS=Streptomyces glaucescens GN=melC2 PE=1 SV=3	58	322	3.0E-12
sp\|P55023\|TYRO_STRLN	Tyrosinase OS=Streptomyces lincolnensis GN=melC2 PE=3 SV=2	58	320	1.0E-11
sp\|P55022\|TYRO_STRGB	Tyrosinase OS=Streptomyces galbus GN=melC2 PE=3 SV=2	58	322	1.0E-11
sp\|B1VTI5\|GRIF_STRGG	Grixazone synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=griF PE=1 SV=1	279	327	3.0E-08
sp\|P00440\|TYRO_NEUCR	Tyrosinase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=T PE=1 SV=5	111	324	4.0E-08
sp\|P07147\|TYRP1_MOUSE	5,6-dihydroxyindole-2-carboxylic acid oxidase OS=Mus musculus GN=Tyrp1 PE=1 SV=1	50	320	7.0E-08

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GO

GO Term	Description	Terminal node
GO:0016491	oxidoreductase activity	Yes
GO:0003824	catalytic activity	No
GO:0003674	molecular_function	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	3.99	0.91	7.06
CcL	In ants, during behavior modification	13.39	4.97	21.81
CcD	In ants, recently dead	20.47	8.86	32.08

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000997	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.156910	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|105 MKLNYGLLLAGLAVTTNGLATGYHRRGDAAHLMSRLSHEYRRDVIDSLPGSVCRREDIVVRKEWDSLSREERIDY TRAVKCLQAKPSRRGNETLARSRFEDFLLTHIDKTFTIHFSGLLLPWHRYFLWLYEQALRKECGYQGYQPYWDWS KYVANPGASSLFDGSDVSMSGDGESIPHGTVDVVIPGGPPPVRYVPRPPGNGGGCVVGGPFQDMTVHIGVSSAGA SAVPEVYSKPRCLTRDLLPFILERRNSYQNVTDLILNSADIDVFYPAVDSNKGVHGGGHGFIGGENLNQFVSPND PVFYLHHAMLDRVWAIWQSRDPDTRQYALNGTLTWENYPPSPDATVQDLVEVGILGADTEIGEVMSTTEGPLCYV YE
Coding	>Ophio5\|105 ATGAAGCTCAACTACGGTCTGCTACTGGCGGGCCTGGCCGTGACAACAAACGGTCTGGCGACTGGCTACCACCGT CGAGGAGATGCGGCTCATCTCATGAGCCGACTCAGTCACGAATACAGACGGGACGTGATAGACTCCCTGCCGGGG AGCGTCTGTCGCCGTGAGGATATCGTGGTGCGAAAAGAATGGGACTCGCTTTCGAGAGAGGAGCGTATCGACTAC ACGCGGGCGGTCAAGTGTCTGCAAGCGAAGCCTTCCAGGAGGGGCAATGAGACGCTGGCACGCAGCCGATTCGAG GACTTTCTACTGACCCATATCGACAAGACCTTCACCATTCACTTTTCGGGGCTCCTGCTGCCGTGGCATCGGTAT TTCCTCTGGCTGTACGAACAAGCGCTGCGGAAAGAATGCGGCTATCAGGGCTATCAACCCTACTGGGACTGGTCC AAGTACGTGGCCAACCCGGGGGCGAGCTCCCTGTTTGACGGAAGCGACGTGTCCATGTCGGGCGACGGAGAGTCG ATTCCGCACGGGACCGTCGACGTCGTCATCCCCGGCGGACCTCCTCCCGTGCGCTACGTGCCGCGACCGCCGGGC AACGGAGGCGGCTGCGTCGTGGGCGGACCCTTCCAGGACATGACGGTTCACATCGGCGTATCGAGCGCGGGGGCA TCGGCCGTGCCGGAGGTATACTCGAAGCCTCGCTGTCTGACGCGGGATCTGCTACCTTTTATCCTCGAGCGACGC AACTCGTACCAGAACGTGACGGACCTAATCCTCAACAGTGCCGACATCGACGTCTTCTACCCGGCTGTCGACTCC AACAAGGGCGTTCACGGCGGAGGACACGGCTTCATCGGGGGAGAGAACCTCAACCAGTTCGTGTCGCCGAATGAT CCCGTCTTTTACCTCCACCACGCTATGCTCGATCGCGTCTGGGCCATCTGGCAGAGCAGGGACCCGGATACGCGA CAGTACGCCCTCAACGGGACCCTGACATGGGAGAACTATCCGCCTAGCCCTGACGCCACTGTCCAGGATCTCGTC GAAGTCGGGATTTTGGGGGCCGATACCGAGATCGGAGAGGTCATGTCGACGACTGAGGGGCCGCTATGTTACGTC TACGAG
Transcript	>Ophio5\|105 ATGAAGCTCAACTACGGTCTGCTACTGGCGGGCCTGGCCGTGACAACAAACGGTCTGGCGACTGGCTACCACCGT CGAGGAGATGCGGCTCATCTCATGAGCCGACTCAGTCACGAATACAGACGGGACGTGATAGACTCCCTGCCGGGG AGCGTCTGTCGCCGTGAGGATATCGTGGTGCGAAAAGAATGGGACTCGCTTTCGAGAGAGGAGCGTATCGACTAC ACGCGGGCGGTCAAGTGTCTGCAAGCGAAGCCTTCCAGGAGGGGCAATGAGACGCTGGCACGCAGCCGATTCGAG GACTTTCTACTGACCCATATCGACAAGACCTTCACCATTCACTTTTCGGGGCTCCTGCTGCCGTGGCATCGGTAT TTCCTCTGGCTGTACGAACAAGCGCTGCGGAAAGAATGCGGCTATCAGGGCTATCAACCCTACTGGGACTGGTCC AAGTACGTGGCCAACCCGGGGGCGAGCTCCCTGTTTGACGGAAGCGACGTGTCCATGTCGGGCGACGGAGAGTCG ATTCCGCACGGGACCGTCGACGTCGTCATCCCCGGCGGACCTCCTCCCGTGCGCTACGTGCCGCGACCGCCGGGC AACGGAGGCGGCTGCGTCGTGGGCGGACCCTTCCAGGACATGACGGTTCACATCGGCGTATCGAGCGCGGGGGCA TCGGCCGTGCCGGAGGTATACTCGAAGCCTCGCTGTCTGACGCGGGATCTGCTACCTTTTATCCTCGAGCGACGC AACTCGTACCAGAACGTGACGGACCTAATCCTCAACAGTGCCGACATCGACGTCTTCTACCCGGCTGTCGACTCC AACAAGGGCGTTCACGGCGGAGGACACGGCTTCATCGGGGGAGAGAACCTCAACCAGTTCGTGTCGCCGAATGAT CCCGTCTTTTACCTCCACCACGCTATGCTCGATCGCGTCTGGGCCATCTGGCAGAGCAGGGACCCGGATACGCGA CAGTACGCCCTCAACGGGACCCTGACATGGGAGAACTATCCGCCTAGCCCTGACGCCACTGTCCAGGATCTCGTC GAAGTCGGGATTTTGGGGGCCGATACCGAGATCGGAGAGGTCATGTCGACGACTGAGGGGCCGCTATGTTACGTC TACGAGTAG
Gene	>Ophio5\|105 ATGAAGCTCAACTACGGTCTGCTACTGGCGGGCCTGGCCGTGACAACAAACGGTCTGGCGACTGGCTACCACCGT CGAGGAGATGCGGCTCATCTCATGAGCCGACTCAGTCACGAATACAGACGGGACGTGATAGACTCCCTGCCGGGG AGCGTCTGTCGCCGTGAGGATATCGTGGTGCGAAAAGAATGGTGAGCAAGGCTTTATAACGATAACCAAAAAAAA AATAGTTTGGGATCCCGTCCGCTAACGGAGAATGGGCGGAAAATAAGGGACTCGCTTTCGAGAGAGGAGCGTATC GACTACACGCGGGCGGTCAAGTGTCTGCAAGCGAAGCCTTCCAGGAGGGGCAATGAGACGCTGGCACGCAGCCGA TTCGAGGACTTTCTACTGACCCATATCGACAAGACCTTCACCATTCACTTTTCGGGGCTCCTGCTGCCGTGGCAT CGGTATTTCCTCTGGCTGTACGAACAAGCGCTGCGGAAAGAATGCGGCTATCAGGGCTATCAACCCTACTGGGAC TGGTCCAAGTACGTGGCCAACCCGGGGGCGAGCTCCCTGTTTGACGGAAGCGACGTGTCCATGTCGGGCGACGGA GAGTCGATTCCGCACGGGACCGTCGACGTCGTCATCCCCGGCGGACCTCCTCCCGTGCGCTACGTGCCGCGACCG CCGGGCAACGGAGGCGGCTGCGTCGTGGGCGGACCCTTCCAGGACATGACGGTTCACATCGGCGTATCGAGCGCG GGGGCATCGGCCGTGCCGGAGGTATACTCGAAGCCTCGCTGTCTGACGCGGGATCTGCTACCTTTTATCCTCGAG CGACGCAACTCGTACCAGAACGTGACGGACCTAATCCTCAACAGTGCCGACATCGACGTCTTCTACCCGGCTGTC GACTCCAACAAGGGCGTTCACGGCGGAGGACACGGCTTCATCGGGGGAGAGAACCTCAACCAGTTCGTGTCGCCG AATGATCCCGTCTTTTACCTCCACCACGCTATGCTCGATCGCGTCTGGGCCATCTGGCAGAGCAGGGACCCGGAT ACGCGACAGTACGCCCTCAACGGGACCCTGACATGGGAGAACTGTACATGCCTCCTTTTTTTTTTCTCTCTCTCC CATTTTTTCTTTTTCTTCTTTTTTTTTTCCTTTTTATTTTTCTCTTGCACCCTCCTGTCACCGAAAATGAATGCG TCTGCTGACCCAAAGAGAGTATAGATCCGCCTAGCCCTGACGCCACTGTCCAGGATCTCGTCGAAGTCGGGATTT TGGGGGCCGATACCGAGATCGGAGAGGTCATGTCGACGACTGAGGGGCCGCTATGTTACGTCTACGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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