Protein ID | Ophio5|1034 |
Gene name | |
Location | scaffold_131:23371..24080 |
Strand | + |
Gene length (bp) | 709 |
Transcript length (bp) | 621 |
Coding sequence length (bp) | 618 |
Protein length (aa) | 206 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05700 | BCAS2 | Breast carcinoma amplified sequence 2 (BCAS2) | 8.8E-44 | 8 | 196 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q5RAX7|SPF27_PONAB | Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1 | 42 | 190 | 1.0E-10 |
sp|Q9D287|SPF27_MOUSE | Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1 | 42 | 190 | 2.0E-09 |
sp|O75934|SPF27_HUMAN | Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1 | 42 | 190 | 2.0E-09 |
sp|Q949S9|SPF27_ARATH | Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1 | 9 | 190 | 2.0E-09 |
sp|Q5RKQ0|SPF27_DANRE | Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1 | 45 | 194 | 5.0E-08 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q5RAX7|SPF27_PONAB | Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1 | 42 | 190 | 1.0E-10 |
sp|Q9D287|SPF27_MOUSE | Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1 | 42 | 190 | 2.0E-09 |
sp|O75934|SPF27_HUMAN | Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1 | 42 | 190 | 2.0E-09 |
sp|Q949S9|SPF27_ARATH | Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1 | 9 | 190 | 2.0E-09 |
sp|Q5RKQ0|SPF27_DANRE | Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1 | 45 | 194 | 5.0E-08 |
sp|Q6PBE2|SPF27_XENTR | Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1 | 45 | 190 | 5.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006397 | mRNA processing | Yes |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0008150 | biological_process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0016071 | mRNA metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0006396 | RNA processing | No |
GO:0071704 | organic substance metabolic process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 39 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 43.71 | 18.74 | 68.67 |
CcL | In ants, during behavior modification | 188.64 | 99.58 | 277.69 |
CcD | In ants, recently dead | 205.67 | 111.60 | 299.74 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.000286 | yes |
SC16a | CcD | 0.000286 | yes |
CcL | CcD | 0.754862 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|1034 MEAPPAMQDSLPYIETEPSPSARASAQALLAAEEKTQPAPALFPPAYRVKLTKALTAEVERIASKQSSVPLPLSR YEAQEPPASDAVRPALEAAYVSAAYLAARARNLDLLDSYGPNAWLLHNYHLDSLRQRLDSQRAAVAADIDVVNAR RQALQMDAKPELDALEAEWKRTLAQVLETELDVCRLEAQIRRQRRALVAQHSDTPT |
Coding | >Ophio5|1034 ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTACATCGAGACGGAACCGTCCCCTTCGGCTCGGGCGTCG GCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGCCTACAGGGTCAAG TTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCTCCCGCTGTCACGG TACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGTCTCGGCTGCCTAT CTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTTGCATAATTATCAT CTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGTCGTCAATGCCCGC AGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAGGACGCTGGCTCAG GTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGCCCTCGTCGCTCAA CACTCGGACACGCCCACC |
Transcript | >Ophio5|1034 ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTACATCGAGACGGAACCGTCCCCTTCGGCTCGGGCGTCG GCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGCCTACAGGGTCAAG TTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCTCCCGCTGTCACGG TACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGTCTCGGCTGCCTAT CTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTTGCATAATTATCAT CTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGTCGTCAATGCCCGC AGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAGGACGCTGGCTCAG GTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGCCCTCGTCGCTCAA CACTCGGACACGCCCACCTGA |
Gene | >Ophio5|1034 ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTGTGCGTCTTCTATTTTCCGCGGGCGGCCCCGTCTCGCC GTCGGTCGTCATGAGCTCGAGGCGGAAAGCTGACGGGAAATGGTAGCCAGACATCGAGACGGAACCGTCCCCTTC GGCTCGGGCGTCGGCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGC CTACAGGGTCAAGTTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCT CCCGCTGTCACGGTACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGT CTCGGCTGCCTATCTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTT GCATAATTATCATCTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGT CGTCAATGCCCGCAGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAG GACGCTGGCTCAGGTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGC CCTCGTCGCTCAACACTCGGACACGCCCACCTGA |