Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1034
Gene name
Locationscaffold_131:23371..24080
Strand+
Gene length (bp)709
Transcript length (bp)621
Coding sequence length (bp)618
Protein length (aa) 206

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05700 BCAS2 Breast carcinoma amplified sequence 2 (BCAS2) 8.8E-44 8 196

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1 42 190 1.0E-10
sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1 42 190 2.0E-09
sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1 42 190 2.0E-09
sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1 9 190 2.0E-09
sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1 45 194 5.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1 42 190 1.0E-10
sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1 42 190 2.0E-09
sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1 42 190 2.0E-09
sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1 9 190 2.0E-09
sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1 45 194 5.0E-08
sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1 45 190 5.0E-06
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GO

GO Term Description Terminal node
GO:0006397 mRNA processing Yes
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008152 metabolic process No
GO:0016071 mRNA metabolic process No
GO:0044237 cellular metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0016070 RNA metabolic process No
GO:0006396 RNA processing No
GO:0071704 organic substance metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 43.71 18.74 68.67
CcL In ants, during behavior modification 188.64 99.58 277.69
CcD In ants, recently dead 205.67 111.60 299.74

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.754862 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1034
MEAPPAMQDSLPYIETEPSPSARASAQALLAAEEKTQPAPALFPPAYRVKLTKALTAEVERIASKQSSVPLPLSR
YEAQEPPASDAVRPALEAAYVSAAYLAARARNLDLLDSYGPNAWLLHNYHLDSLRQRLDSQRAAVAADIDVVNAR
RQALQMDAKPELDALEAEWKRTLAQVLETELDVCRLEAQIRRQRRALVAQHSDTPT
Coding >Ophio5|1034
ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTACATCGAGACGGAACCGTCCCCTTCGGCTCGGGCGTCG
GCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGCCTACAGGGTCAAG
TTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCTCCCGCTGTCACGG
TACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGTCTCGGCTGCCTAT
CTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTTGCATAATTATCAT
CTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGTCGTCAATGCCCGC
AGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAGGACGCTGGCTCAG
GTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGCCCTCGTCGCTCAA
CACTCGGACACGCCCACC
Transcript >Ophio5|1034
ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTACATCGAGACGGAACCGTCCCCTTCGGCTCGGGCGTCG
GCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGCCTACAGGGTCAAG
TTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCTCCCGCTGTCACGG
TACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGTCTCGGCTGCCTAT
CTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTTGCATAATTATCAT
CTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGTCGTCAATGCCCGC
AGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAGGACGCTGGCTCAG
GTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGCCCTCGTCGCTCAA
CACTCGGACACGCCCACCTGA
Gene >Ophio5|1034
ATGGAGGCGCCTCCCGCCATGCAGGATTCCCTCCCCTGTGCGTCTTCTATTTTCCGCGGGCGGCCCCGTCTCGCC
GTCGGTCGTCATGAGCTCGAGGCGGAAAGCTGACGGGAAATGGTAGCCAGACATCGAGACGGAACCGTCCCCTTC
GGCTCGGGCGTCGGCCCAGGCGCTCTTGGCAGCAGAGGAAAAAACCCAACCGGCTCCGGCTTTATTCCCACCAGC
CTACAGGGTCAAGTTGACCAAGGCGCTGACGGCCGAGGTAGAGCGGATCGCCTCCAAGCAGTCTTCGGTTCCGCT
CCCGCTGTCACGGTACGAAGCGCAGGAGCCGCCGGCGTCGGATGCGGTCCGTCCCGCGCTGGAGGCTGCTTACGT
CTCGGCTGCCTATCTTGCTGCGCGGGCGAGGAATCTCGATTTGTTGGATTCGTATGGGCCCAATGCTTGGCTGTT
GCATAATTATCATCTGGATTCGTTGCGGCAGAGACTCGATTCCCAGAGAGCTGCCGTCGCGGCTGATATCGATGT
CGTCAATGCCCGCAGGCAGGCTCTTCAGATGGACGCCAAGCCAGAGTTGGACGCCTTGGAGGCCGAGTGGAAGAG
GACGCTGGCTCAGGTGCTCGAGACGGAACTCGACGTTTGTCGCTTAGAGGCTCAGATTCGTCGTCAGCGTCGCGC
CCTCGTCGCTCAACACTCGGACACGCCCACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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