Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|1014
Gene name
Locationscaffold_130:29432..29687
Strand-
Gene length (bp)255
Transcript length (bp)255
Coding sequence length (bp)252
Protein length (aa) 84

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17921 Integrase_H2C2 Integrase zinc binding domain 1.9E-06 36 82

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 2.79 0.00 6.15
CcL In ants, during behavior modification 23.29 0.00 47.30
CcD In ants, recently dead 23.17 2.19 44.15

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.051716 no
SC16a CcD 0.051716 no
CcL CcD 0.985311 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|1014
MLGQLGDQDTIKGLPFLRADGLLYMVETDGRRRLCIPATCAREVIADAHERHFHAGRTRLWQDLSASFAIPRLSA
MIDEFYRQV
Coding >Ophio5|1014
ATGCTCGGCCAGCTCGGCGACCAGGACACGATCAAAGGACTGCCTTTCCTCCGCGCCGATGGGTTGCTCTACATG
GTGGAAACCGACGGCAGGCGCCGCCTCTGCATTCCCGCCACATGCGCCCGAGAGGTCATCGCCGACGCCCACGAA
CGACACTTTCACGCCGGCCGAACCCGCCTTTGGCAGGACCTTTCCGCCAGTTTCGCCATTCCCCGGCTCTCCGCG
ATGATCGACGAGTTTTATCGCCAAGTG
Transcript >Ophio5|1014
ATGCTCGGCCAGCTCGGCGACCAGGACACGATCAAAGGACTGCCTTTCCTCCGCGCCGATGGGTTGCTCTACATG
GTGGAAACCGACGGCAGGCGCCGCCTCTGCATTCCCGCCACATGCGCCCGAGAGGTCATCGCCGACGCCCACGAA
CGACACTTTCACGCCGGCCGAACCCGCCTTTGGCAGGACCTTTCCGCCAGTTTCGCCATTCCCCGGCTCTCCGCG
ATGATCGACGAGTTTTATCGCCAAGTGTGA
Gene >Ophio5|1014
ATGCTCGGCCAGCTCGGCGACCAGGACACGATCAAAGGACTGCCTTTCCTCCGCGCCGATGGGTTGCTCTACATG
GTGGAAACCGACGGCAGGCGCCGCCTCTGCATTCCCGCCACATGCGCCCGAGAGGTCATCGCCGACGCCCACGAA
CGACACTTTCACGCCGGCCGAACCCGCCTTTGGCAGGACCTTTCCGCCAGTTTCGCCATTCCCCGGCTCTCCGCG
ATGATCGACGAGTTTTATCGCCAAGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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