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| PFAM domain | PF00076 |
| Short name | RRM_1 |
| Long name | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| Proteins with at least one of this domain | 57 |
| Total domain count | 88 |
| More information | PFAM website |
| Short name | Long name | E-value | Start | End | Name | ||
|---|---|---|---|---|---|---|---|
| protein ID | PFAM | ||||||
| Ophio5|1102 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-21 | 28 | 97 | |
| Ophio5|1124 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.9E-10 | 6 | 69 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-18 | 301 | 368 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.4E-09 | 483 | 544 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-12 | 599 | 673 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-15 | 704 | 772 | ||
| Ophio5|1735 | PF01480 | PWI | PWI domain | 1.4E-07 | 11 | 76 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.1E-05 | 292 | 345 | ||
| Ophio5|1869 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.6E-14 | 35 | 104 | |
| Ophio5|2106 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-12 | 238 | 307 | |
| Ophio5|2155 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-15 | 74 | 143 | |
| Ophio5|2393 | PF05383 | La | La domain | 1.5E-19 | 187 | 244 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.1E-09 | 292 | 350 | ||
| Ophio5|2477 | PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 5.2E-32 | 3 | 170 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.4E-15 | 253 | 323 | ||
| Ophio5|2594 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.0E-17 | 287 | 356 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-18 | 390 | 455 | ||
| Ophio5|260 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.2E-12 | 10 | 80 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.2E-12 | 171 | 236 | ||
| Ophio5|2766 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-10 | 9 | 72 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-10 | 106 | 169 | ||
| Ophio5|2937 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-04 | 295 | 347 | |
| Ophio5|3109 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-14 | 15 | 85 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.1E-15 | 103 | 172 | ||
| Ophio5|340 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-21 | 10 | 80 | |
| PF14327 | CSTF2_hinge | Hinge domain of cleavage stimulation factor subunit 2 | 1.1E-32 | 122 | 201 | ||
| PF14304 | CSTF_C | Transcription termination and cleavage factor C-terminal | 4.9E-10 | 259 | 289 | ||
| Ophio5|3768 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.3E-07 | 142 | 208 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-12 | 327 | 399 | ||
| Ophio5|3895 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.8E-10 | 364 | 435 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.8E-06 | 495 | 555 | ||
| Ophio5|4019 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.6E-10 | 505 | 564 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-08 | 593 | 655 | ||
| Ophio5|4033 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-05 | 83 | 165 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-10 | 200 | 257 | ||
| Ophio5|4051 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.2E-05 | 26 | 64 | |
| Ophio5|4097 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-19 | 78 | 147 | |
| Ophio5|4128 | PF16131 | Torus | Torus domain | 3.3E-41 | 49 | 154 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-07 | 190 | 241 | ||
| Ophio5|4183 | PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 8.2E-44 | 93 | 266 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.3E-05 | 510 | 554 | ||
| Ophio5|4317 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-09 | 337 | 389 | |
| Ophio5|4552 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-14 | 106 | 174 | |
| Ophio5|477 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.1E-12 | 9 | 74 | |
| Ophio5|4929 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.2E-09 | 324 | 387 | |
| Ophio5|5000 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-04 | 180 | 250 | |
| PF01424 | R3H | R3H domain | 2.1E-09 | 322 | 378 | ||
| Ophio5|5428 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.3E-08 | 20 | 89 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.5E-07 | 166 | 230 | ||
| Ophio5|5476 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-08 | 353 | 418 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.8E-14 | 446 | 516 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-15 | 581 | 644 | ||
| Ophio5|5484 | PF14570 | zf-RING_4 | RING/Ubox like zinc-binding domain | 1.2E-19 | 15 | 62 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-05 | 123 | 200 | ||
| Ophio5|554 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-06 | 29 | 99 | |
| Ophio5|6038 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.9E-14 | 39 | 108 | |
| Ophio5|6224 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-11 | 81 | 147 | |
| Ophio5|6235 | PF04818 | CID | CID domain | 4.4E-11 | 24 | 144 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-05 | 457 | 506 | ||
| Ophio5|6260 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.2E-06 | 78 | 168 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-17 | 87 | 156 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.1E-20 | 177 | 247 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-14 | 304 | 367 | ||
| Ophio5|6314 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.8E-15 | 157 | 226 | |
| Ophio5|6329 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-16 | 71 | 141 | |
| Ophio5|6333 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-17 | 89 | 158 | |
| Ophio5|6396 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-18 | 77 | 143 | |
| Ophio5|6622 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-14 | 160 | 226 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-19 | 260 | 329 | ||
| PF15519 | RBM39linker | linker between RRM2 and RRM3 domains in RBM39 protein | 5.7E-23 | 387 | 461 | ||
| Ophio5|6734 | PF12353 | eIF3g | Eukaryotic translation initiation factor 3 subunit G | 7.2E-43 | 29 | 155 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-15 | 219 | 284 | ||
| Ophio5|6916 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.3E-09 | 237 | 301 | |
| Ophio5|70 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-14 | 105 | 173 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-15 | 219 | 290 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-17 | 393 | 461 | ||
| Ophio5|7117 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-12 | 352 | 414 | |
| Ophio5|7178 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.5E-16 | 62 | 132 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-12 | 168 | 236 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-13 | 357 | 416 | ||
| Ophio5|732 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-01 | 579 | 672 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-09 | 598 | 665 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.6E-10 | 675 | 740 | ||
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-04 | 760 | 846 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-16 | 767 | 832 | ||
| PF16842 | RRM_occluded | Occluded RNA-recognition motif | 6.3E-27 | 889 | 965 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-04 | 896 | 956 | ||
| Ophio5|7450 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.7E-16 | 11 | 83 | |
| Ophio5|7481 | PF02136 | NTF2 | Nuclear transport factor 2 (NTF2) domain | 7.7E-23 | 45 | 159 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.5E-05 | 418 | 479 | ||
| Ophio5|7484 | PF12220 | U1snRNP70_N | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | 8.3E-26 | 3 | 93 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-16 | 106 | 182 | ||
| PF16367 | RRM_7 | RNA recognition motif | 1.1E-06 | 106 | 177 | ||
| Ophio5|7486 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.7E-02 | 52 | 139 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-17 | 63 | 132 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-18 | 151 | 219 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.4E-21 | 244 | 312 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-07 | 347 | 379 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.8E-08 | 418 | 455 | ||
| PF00658 | PABP | Poly-adenylate binding protein, unique domain | 6.4E-27 | 667 | 731 | ||
| Ophio5|7710 | PF00929 | RNase_T | Exonuclease | 2.5E-06 | 19 | 133 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-08 | 255 | 322 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 5.7E-11 | 350 | 377 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.3E-07 | 429 | 458 | ||
| Ophio5|7951 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.5E-15 | 121 | 169 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.1E-16 | 204 | 261 | ||
| Ophio5|8038 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.7E-16 | 50 | 118 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-12 | 231 | 312 | ||
| Ophio5|8375 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.1E-17 | 307 | 376 | |
| Ophio5|8398 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-19 | 16 | 82 | |
| Ophio5|8553 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-06 | 9 | 69 | |
| Ophio5|8585 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-11 | 478 | 536 | |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 4.0E-05 | 690 | 722 | ||
| PF00806 | PUF | Pumilio-family RNA binding repeat | 8.0E-03 | 725 | 757 | ||
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.4E-02 | 768 | 785 |