Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain48
Total domain count60
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ophio5|129 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-14 213 344
PF17862 AAA_lid_3 AAA+ lid domain 2.1E-07 369 396
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-05 515 626
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-45 516 645
Ophio5|1770 PF02861 Clp_N Clp amino terminal domain, pathogenicity island component 3.1E-04 110 158
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-14 221 338
PF17871 AAA_lid_9 AAA lid domain 7.6E-31 362 462
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-06 627 745
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 7.7E-45 630 791
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.8E-10 631 750
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-09 632 753
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.9E-24 798 880
Ophio5|1889 PF13191 AAA_16 AAA ATPase domain 1.3E-11 126 209
PF13401 AAA_22 AAA domain 2.8E-11 152 277
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-07 156 287
PF17872 AAA_lid_10 AAA lid domain 7.8E-06 333 373
Ophio5|1982 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.9E-13 126 180
PF05673 DUF815 Protein of unknown function (DUF815) 1.4E-05 234 304
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-41 239 371
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-11 394 437
Ophio5|2081 PF03215 Rad17 Rad17 P-loop domain 1.1E-08 43 177
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.2E-10 61 210
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-16 80 208
Ophio5|2186 PF08740 BCS1_N BCS1 N terminal 3.8E-55 50 244
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-09 282 347
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-05 389 434
Ophio5|2315 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-42 639 774
PF17862 AAA_lid_3 AAA+ lid domain 4.0E-08 800 833
Ophio5|2373 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-16 472 590
Ophio5|2764 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-18 650 768
Ophio5|2909 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-27 220 351
PF17862 AAA_lid_3 AAA+ lid domain 3.7E-07 375 416
Ophio5|2942 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-11 119 251
PF17871 AAA_lid_9 AAA lid domain 9.3E-36 257 359
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.3E-43 513 685
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-04 516 631
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.9E-09 518 636
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-05 520 636
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.7E-25 692 772
Ophio5|3177 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 4.2E-07 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 6.0E-14 325 367
Ophio5|3303 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 3.4E-11 59 114
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.2E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-42 172 305
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-10 327 370
Ophio5|3379 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 5.2E-24 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-22 473 611
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.9E-07 473 608
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 8.3E-68 699 902
PF13541 ChlI Subunit ChlI of Mg-chelatase 1.4E-06 748 874
Ophio5|3450 PF08740 BCS1_N BCS1 N terminal 9.0E-32 52 216
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-18 254 378
Ophio5|3825 PF01426 BAH BAH domain 6.0E-10 78 198
PF13191 AAA_16 AAA ATPase domain 4.4E-10 320 459
PF13401 AAA_22 AAA domain 7.7E-08 342 453
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-16 346 488
PF17872 AAA_lid_10 AAA lid domain 2.8E-10 519 554
Ophio5|3875 PF13086 AAA_11 AAA domain 6.2E-21 480 802
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-06 1054 1154
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-07 1329 1449
PF17866 AAA_lid_6 AAA lid domain 3.4E-08 1497 1550
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-13 1606 1723
Ophio5|3996 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 8.4E-27 124 215
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.0E-09 530 662
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.6E-43 852 978
PF17862 AAA_lid_3 AAA+ lid domain 9.7E-09 1013 1045
Ophio5|4275 PF06480 FtsH_ext FtsH Extracellular 1.4E-08 288 386
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-40 490 622
PF17862 AAA_lid_3 AAA+ lid domain 9.3E-12 652 690
PF01434 Peptidase_M41 Peptidase family M41 6.8E-69 706 885
Ophio5|4304 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-07 580 728
Ophio5|4433 PF08740 BCS1_N BCS1 N terminal 1.8E-37 32 210
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.2E-16 246 370
Ophio5|4448 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-15 829 944
Ophio5|4546 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.4E-16 105 181
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-39 240 372
PF17862 AAA_lid_3 AAA+ lid domain 7.2E-07 395 435
Ophio5|4583 PF13173 AAA_14 AAA domain 2.7E-06 69 173
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-11 70 187
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 2.3E-04 71 150
PF08542 Rep_fac_C Replication factor C C-terminal domain 6.0E-19 256 342
Ophio5|4739 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.8E-17 41 121
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 4.0E-07 142 202
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-06 255 374
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-47 256 385
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.3E-07 256 353
PF17862 AAA_lid_3 AAA+ lid domain 4.3E-13 408 447
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-47 530 663
PF17862 AAA_lid_3 AAA+ lid domain 8.1E-08 685 724
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.1E-04 728 779
Ophio5|4802 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-38 692 818
PF17862 AAA_lid_3 AAA+ lid domain 4.5E-09 841 877
Ophio5|4811 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.7E-11 89 144
PF05673 DUF815 Protein of unknown function (DUF815) 4.6E-06 162 267
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.0E-08 201 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-44 202 334
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 202 295
Ophio5|5298 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 2.3E-14 296 369
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-09 490 590
PF08519 RFC1 Replication factor RFC1 C terminal domain 7.9E-56 768 920
Ophio5|5300 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.7E-10 19 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.3E-06 38 179
Ophio5|5352 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-08 253 374
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.2E-38 516 653
PF17862 AAA_lid_3 AAA+ lid domain 1.2E-10 676 711
Ophio5|5459 PF06068 TIP49 TIP49 P-loop domain 1.8E-163 15 366
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-06 67 119
PF17856 TIP49_C TIP49 AAA-lid domain 2.9E-23 375 440
Ophio5|6064 PF06068 TIP49 TIP49 P-loop domain 1.3E-154 20 362
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-06 72 124
PF17856 TIP49_C TIP49 AAA-lid domain 1.5E-16 368 433
Ophio5|6147 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-39 352 493
PF17862 AAA_lid_3 AAA+ lid domain 2.1E-09 520 555
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-09 634 746
Ophio5|617 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-07 559 600
Ophio5|6421 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-05 757 865
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-43 1018 1157
Ophio5|6570 PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.1E-05 335 403
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-41 336 465
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-06 488 530
PF01434 Peptidase_M41 Peptidase family M41 6.9E-53 547 726
Ophio5|7100 PF03215 Rad17 Rad17 P-loop domain 2.6E-06 29 68
PF13671 AAA_33 AAA domain 1.6E-10 41 164
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-04 42 72
PF13238 AAA_18 AAA domain 2.5E-08 42 163
PF01202 SKI Shikimate kinase 8.8E-12 48 204
Ophio5|7192 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 6.1E-32 177 463
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-20 615 752
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.4E-06 615 748
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 8.2E-64 883 1088
Ophio5|7540 PF08740 BCS1_N BCS1 N terminal 2.8E-43 44 247
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-08 285 353
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-05 450 501
Ophio5|7642 PF04212 MIT MIT (microtubule interacting and transport) domain 2.7E-15 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.9E-07 157 253
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.6E-41 164 292
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-06 318 351
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 5.2E-25 366 426
Ophio5|7887 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-12 563 682
Ophio5|7992 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-10 276 383
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.2E-05 276 356
Ophio5|8023 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.5E-09 135 253
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.1E-13 167 274
PF16193 AAA_assoc_2 AAA C-terminal domain 2.9E-20 300 369
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 2.7E-56 370 528
Ophio5|8211 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-28 189 359
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-05 191 267
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-11 192 296
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.3E-07 386 443
Ophio5|8483 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-05 3 52
Ophio5|8484 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-11 139 181
Ophio5|8511 PF00628 PHD PHD-finger 4.4E-11 200 247
PF13831 PHD_2 PHD-finger 2.8E-09 213 246
PF13191 AAA_16 AAA ATPase domain 7.1E-10 303 460
PF13401 AAA_22 AAA domain 1.1E-07 324 466
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.1E-07 327 484
PF14629 ORC4_C Origin recognition complex (ORC) subunit 4 C-terminus 2.1E-59 499 713
Ophio5|856 PF03215 Rad17 Rad17 P-loop domain 6.9E-09 29 90
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.0E-09 50 200
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.9E-16 69 196
PF08542 Rep_fac_C Replication factor C C-terminal domain 8.2E-12 282 352

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