© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07451 |
| Gene name | |
| Location | scaffold_12:26681..27847 |
| Strand | + |
| Gene length (bp) | 1166 |
| Transcript length (bp) | 948 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 2.0E-57 | 5 | 294 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.1E-22 | 6 | 206 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 7.9E-10 | 39 | 156 |
| PF07993 | NAD_binding_4 | Male sterility protein | 1.0E-07 | 64 | 191 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 1.5E-05 | 47 | 149 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 8.7E-07 | 7 | 183 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.7115 | 0.5159 | 0.0997 | 0.039 | 0.3533 | 0.0836 | 0.0273 | 0.093 | 0.0819 | 0.0271 |
| Orthofinder run ID | 4 |
| Orthogroup | 2076 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07451 MAQQSVLVTGATGLLGREVVNAFRLGGWKVKGTGHSRADGVDVLRIDLTKEDEVARALDEIKPQVIVHCAAEKAP DKVAKDPEGARALNVAASASLAMLAADRGILVIYISTDYVFPGTAGDAPYEADATPRPTNLYGQTKLDGERAVLD AYERVGRPGLGVVLRVPVLYGHAETPGESAVNSLLDLVWKAQTEGLEMTMDHWARRYPTNTEDVGRVCCDVAAKY VDSQQQLPRVLQFSSEDNMTKYDICQRLGSMMGLSTASIKANTEGNEAHSSAQRPYDCHLSTSTLQGLGIDVSTC DFDAWWRREVGAFRK* |
| Coding | >Ophcf2|07451 ATGGCCCAACAATCTGTACTTGTCACCGGCGCAACGGGTCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC GGTGGATGGAAGGTCAAGGGTACAGGCCACTCTCGCGCAGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG GAAGACGAGGTCGCGAGAGCGCTGGACGAGATCAAACCGCAGGTCATCGTCCACTGCGCAGCCGAAAAGGCGCCT GACAAGGTGGCCAAGGACCCAGAAGGCGCGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCG GCTGACCGGGGCATCCTCGTCATCTACATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGATGCGCCCTAC GAGGCCGATGCCACGCCGCGGCCGACCAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGAC GCGTACGAGCGGGTGGGCAGACCGGGCCTGGGCGTGGTGCTGCGCGTGCCCGTCCTCTACGGCCACGCGGAGACG CCGGGCGAGAGCGCCGTCAACAGTCTGCTGGACCTGGTGTGGAAAGCGCAGACGGAGGGGTTGGAGATGACAATG GACCACTGGGCGCGGCGGTACCCTACAAACACGGAAGACGTGGGACGCGTTTGTTGCGATGTGGCGGCAAAGTAT GTCGACTCGCAACAGCAGTTGCCAAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACGAAGTACGACATCTGT CAGCGCTTGGGCTCCATGATGGGCCTCTCGACGGCAAGCATCAAGGCAAATACGGAGGGAAATGAGGCCCATTCC TCGGCGCAGCGGCCGTACGATTGCCACCTTAGCACGTCGACCCTCCAGGGTCTGGGGATCGACGTGTCGACGTGC GACTTTGACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA |
| Transcript | >Ophcf2|07451 ATGGCCCAACAATCTGTACTTGTCACCGGCGCAACGGGTCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC GGTGGATGGAAGGTCAAGGGTACAGGCCACTCTCGCGCAGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG GAAGACGAGGTCGCGAGAGCGCTGGACGAGATCAAACCGCAGGTCATCGTCCACTGCGCAGCCGAAAAGGCGCCT GACAAGGTGGCCAAGGACCCAGAAGGCGCGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCG GCTGACCGGGGCATCCTCGTCATCTACATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGATGCGCCCTAC GAGGCCGATGCCACGCCGCGGCCGACCAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGAC GCGTACGAGCGGGTGGGCAGACCGGGCCTGGGCGTGGTGCTGCGCGTGCCCGTCCTCTACGGCCACGCGGAGACG CCGGGCGAGAGCGCCGTCAACAGTCTGCTGGACCTGGTGTGGAAAGCGCAGACGGAGGGGTTGGAGATGACAATG GACCACTGGGCGCGGCGGTACCCTACAAACACGGAAGACGTGGGACGCGTTTGTTGCGATGTGGCGGCAAAGTAT GTCGACTCGCAACAGCAGTTGCCAAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACGAAGTACGACATCTGT CAGCGCTTGGGCTCCATGATGGGCCTCTCGACGGCAAGCATCAAGGCAAATACGGAGGGAAATGAGGCCCATTCC TCGGCGCAGCGGCCGTACGATTGCCACCTTAGCACGTCGACCCTCCAGGGTCTGGGGATCGACGTGTCGACGTGC GACTTTGACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA |
| Gene | >Ophcf2|07451 ATGGCCCAACAATCTGTACTTGTCACCGGCGCAACGGGTCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC GGTGGATGGAAGGTCAAGGGTACAGGCCACTCTCGCGCAGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG GAAGACGAGGTCGCGAGAGCGCTGGACGAGATCAAGTTTGCCCTCCCTGAGCGGTGAAGAAGCTATCGATGACGA CTGACGAAGTTTACCGGGGGGGATCAGACCGCAGGTCATCGTCCACTGTGAGTGACGAGAGTGATTGTCAAGACG GCAGATGATGACACGCGGAGTCACCTAGGCGCAGCCGAAAAGGCGCCTGACAAGGTGGCCAAGGACCCAGAAGGC GCGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCGGCTGACCGGGGCATCCTCGTCATCTAC ATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGATGCGCCCTACGAGGCCGATGCCACGCCGCGGCCGACC AACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGACGCGTACGAGCGGGTGGGCAGACCGGGC CTGGGCGTGGTGCTGCGCGTGCCCGTCCTCTACGGCCACGCGGAGACGCCGGGCGAGAGCGCCGTCAACAGTCTG CTGGACCTGGTGTGGAAAGCGCAGACGGAGGGGTTGGAGATGACAATGGACCACTGGGCGCGGCGGTACCCTACA AACACGGAAGACGTGGGACGCGTTTGTTGCGGTATGTCTCAGGACCCCTCCACCCTGCCCGTCCCCTTCCCGCTG CCCCTCGTCCGAATATATTGTTCGCATATACGAGCCTGAGAACCCCTTCAGATGTGGCGGCAAAGTATGTCGACT CGCAACAGCAGTTGCCAAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACGAAGTACGACATCTGTCAGCGCT TGGGCTCCATGATGGGCCTCTCGACGGCAAGCATCAAGGCAAATACGGAGGGAAATGAGGCCCATTCCTCGGCGC AGCGGCCGTACGATTGCCACCTTAGCACGTCGACCCTCCAGGGTCTGGGGATCGACGTGTCGACGTGCGACTTTG ACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA |