© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|07443 |
| Gene name | |
| Location | scaffold_12:5865..9089 |
| Strand | + |
| Gene length (bp) | 3224 |
| Transcript length (bp) | 1854 |
| Coding sequence length (bp) | 1854 |
| Protein length (aa) | 618 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02731 | SKIP_SNW | SKIP/SNW domain | 1.4E-64 | 270 | 427 |
| PF01105 | EMP24_GP25L | emp24/gp25L/p24 family/GOLD | 4.6E-47 | 22 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005681 | spliceosomal complex | Yes |
| GO:0000398 | mRNA splicing, via spliceosome | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006397 | mRNA processing | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0000375 | RNA splicing, via transesterification reactions | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0008380 | RNA splicing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 177 | 199 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.36 | 0.0 | 0.78 |
| Alive | In ants, during behavior modification | 0.53 | 0.0 | 1.09 |
| Dead | In ants, recently dead | 0.36 | 0.0 | 0.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 1.0 | no |
| Alive | Dead | 1.0 | no |
| Dead | Fungus | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07443 MRLPTIAAGVFACLVTNVVATALTYKLEAGEKACFYAETNKENEKIAFYFAVQSGGSFDIDYRVEGPDSKIILEG EKERQGDFVFSAQKTGEYSFCFDNEMSTFTEKMIDIEISSEHEARTAQLPSKQGTSPEQTSVLEESIFKISGQLS TISRNQKYFRTRENRNFSTVNSTEKRIVNFSVIQICLIVCMGALQVLVVRFFFQGARKGYDLIPLRQRADAGEID LARPDKETVAATTEKTKNALTALISGAVAAQKPKNINVGQRKEATFVRYTPANQMGDNSKKQDRIIKIVERQRDP MEPPKFKHKKIPRGPPSPPPPVMRSPPRKLTAEDQEMWRIPPPVSNWKNPKGFTVPLDKRLAADGRGLHDVTIND KHAQFAEAVKMAERHAREVQQRALMQQRLAEQEKARKDDSLRALALKTREERLAQSSTPRASEESDSEDAEIRER ERPDASGARKKSANCGRTEWAQSGGSRGFDSGFNEDNHYDKPLFAAQDAISSIYRPRANVNDDSFDDDAGDKEMA KIHKISRFGEALGKGPFEARPMPRQTVGTRRTRSVRKEAADPFNVDKFLSEVDQSTSSKRGYGLQADGGGGGRQA KRARVDDDDDEGGGGGE* |
| Coding | >Ophcf2|07443 ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT GCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGC GAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAG ATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCA TCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCT ACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAA CGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGG TTCTTCTTCCAGGGAGCACGCAAAGGCTATGATCTCATTCCGTTGCGGCAGCGGGCTGACGCTGGCGAGATCGAT CTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGACCGCACTCATCAGC GGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTTTGTGCGCTACACG CCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCGACAACGCGATCCC ATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCCTGTGATGCGCTCG CCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAACTGGAAGAACCCC AAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGTGACCATCAACGAC AAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCAGCGGGCCCTGATG CAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCTGAAGACGCGCGAA GAGCGACTCGCTCAGTCATCAACTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGC GAAAGGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGA TCCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACGATAAGCCGCTGTTCGCTGCTCAGGACGCCATC TCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCTTCGACGACGACGCGGGCGACAAGGAGATGGCC AAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGGGACCTTTCGAGGCGCGGCCGATGCCGAGGCAA ACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCAACGTCGACAAATTCCTGTCC GAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCGGAGGAGGAGGTCGGCAGGCG AAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA |
| Transcript | >Ophcf2|07443 ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT GCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGC GAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAG ATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCA TCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCT ACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAA CGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGG TTCTTCTTCCAGGGAGCACGCAAAGGCTATGATCTCATTCCGTTGCGGCAGCGGGCTGACGCTGGCGAGATCGAT CTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGACCGCACTCATCAGC GGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTTTGTGCGCTACACG CCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCGACAACGCGATCCC ATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCCTGTGATGCGCTCG CCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAACTGGAAGAACCCC AAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGTGACCATCAACGAC AAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCAGCGGGCCCTGATG CAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCTGAAGACGCGCGAA GAGCGACTCGCTCAGTCATCAACTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGC GAAAGGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGA TCCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACGATAAGCCGCTGTTCGCTGCTCAGGACGCCATC TCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCTTCGACGACGACGCGGGCGACAAGGAGATGGCC AAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGGGACCTTTCGAGGCGCGGCCGATGCCGAGGCAA ACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCAACGTCGACAAATTCCTGTCC GAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCGGAGGAGGAGGTCGGCAGGCG AAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA |
| Gene | >Ophcf2|07443 ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT GCCGTAGGCTTTCTTCGCTGAGGCATCTGGGTCTTCTGTGCTTATTCTGACCGCATCATAGGTCCAATCTGGAGG CTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGCGAGAAGGAGCGTCAAGG CGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAGATGAGCACCTTTACGGA GAAGATGATCGATATCGAGATCTCAGTCTGTTCACCCAGCGGCCCTACCGTCATACACAGGCATGCTGATTCTTT CATGGTGCAGAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCATCCAAGCAGGGAACATCTCCCGAGCAAACGTC GGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCTACCATCTCGCGCAACCAGAAATACTTTCGAAC TCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAACGGATTGTCAACTTTAGCGTGATTCAGATTTG CCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGGTTCTTCTTCCAGGTATGTCCATAAGCCTATGA TGATCGAGAGTAGTATCTGACAGCCTTTGCCAAACTCAGGGAGCACGCAAAGGCTATGTATGAAGCATTATAAGA CTGTCTGAATGTGATTCGCGCTGTGTTGTTGGGCGAGGAGCAAAAGCGAGATACGGAAGCGTTACGAGGCGTCAC AAGTGTTCAGAAGCCGTCGAAGGTACCGGCGAGCCTGCTTCTGAGGTGTTTCATCTACGCTCTCTTGTTCATTGT GGTGCCCGGAACCTCGTCGGTTTCATGCGGCTTGAGTAGACATTGAAGACGAGGATGCTACATGTAGGTTGGGGG AAGTCGGCTGATTCCTACATTATTTCGCGTGTTGGTAGACAGAGGCCTGTTGTATTAGGCTATATCTGCAGCCTC TGAATATGGATAATGTAGCAAATGAACTTTTGAGGACGTTGGCATCGTGGGGACGAAATATCTTGTATTCCATGA GCACTGAGCAGTGACGACAACCTCTCTCGGCTTGCTAAGGTTGAACGGATGACAAATATGCACCGCCACAGCGGA CATGACTACGCCACACGTTGAAATTTACTAAGACTCCACCACGGACAGGAGCGGCTTCTTCTCCGTGAACTGGAA ACTTCAAGTAACGACGAGGCGCCGATCCGCGATGGCCTCGATTGCCGCATCTCCAGGCTTCGCTGCCGCAGCCGA AATACACGGGAGGAAATGAGGAAGAAGAATCTCGATCGCAGCAGCGCGGCCCGCGTATCGTCAGCGCCAGCCAGC TGGACGAGAGCCAGGTTGTGCTAAGACGAACGGGACCGCCGCCTTATGGCCAGCGAGAAGGCTGGAGGCCACGGT CACAGGAGGACTATGGAGATGGAGGCGCGTTTCCCGAGGTTCCGGTGGCTCAGTATCCGCTCGACATGGGCAGGA AGCACGGAGTCAAGAGCAACGCGTTGGCGATACAGGTCGATTCTGAGGGCAAAGTCAAGTATGACGCCATCGCGA GACGCGGCCACGGCGACGGCCGGATCATCCACACGTCCTTTAGGATCTCATTCCGTTGCGGCAGCGGGCTGACGC TGGCGAGATCGATCTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGAC CGCACTCATCAGCGGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTT TGTGCGCTACACGCCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCG ACAACGCGATCCCATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCC TGTGATGCGCTCGCCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAA CTGGAAGAACCCCAAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGT GACCATCAACGACAAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCA GCGGGCCCTGATGCAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCT GAAGACGCGCGAAGAGCGACTCGCTCAGTCATCAAGTCGCGGAAGAAGAGAGTCGAGGACGTCTGGGTCACGGTC ACGGTCGCGAAGCCACAGCTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGCGAAA GGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGATCCA GGTCATGGCACGAGAGCAGGGACGCGACATCTCGGAGAAGATTGCGCTGGGGCTGGCGAAGCCGACTCAATCAAG GAGAGCATGTACGACTCGCGTCTCTTCAACCGATCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACG ATAAGCCGCTGTTCGCTGCTCAGGACGCCATCTCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCT TCGACGACGACGCGGGCGACAAGGAGATGGCCAAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGG GACCTTTCGAGGCGCGGCCGATGCCGAGGTGAGTTGCTCTTTTCCTTGTCTCTTTTCGTCCCTTGTCCATCTCTT CAGAGTTCCCTGACAGGCAAACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCA ACGTCGACAAATTCCTGTCCGAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCG GAGGAGGAGGTCGGCAGGCGAAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA |