Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07443
Gene name
Locationscaffold_12:5865..9089
Strand+
Gene length (bp)3224
Transcript length (bp)1854
Coding sequence length (bp)1854
Protein length (aa) 618

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02731 SKIP_SNW SKIP/SNW domain 1.4E-64 270 427
PF01105 EMP24_GP25L emp24/gp25L/p24 family/GOLD 4.6E-47 22 204

GO

GO Term Description Terminal node
GO:0005681 spliceosomal complex Yes
GO:0000398 mRNA splicing, via spliceosome Yes
GO:0006725 cellular aromatic compound metabolic process No
GO:0006397 mRNA processing No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0009987 cellular process No
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0000375 RNA splicing, via transesterification reactions No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0032991 protein-containing complex No
GO:1901360 organic cyclic compound metabolic process No
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile No
GO:0071704 organic substance metabolic process No
GO:0044238 primary metabolic process No
GO:0005575 cellular_component No
GO:1990904 ribonucleoprotein complex No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0140513 nuclear protein-containing complex No
GO:0008380 RNA splicing No
GO:0090304 nucleic acid metabolic process No
GO:0016071 mRNA metabolic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 177 199 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07443
MRLPTIAAGVFACLVTNVVATALTYKLEAGEKACFYAETNKENEKIAFYFAVQSGGSFDIDYRVEGPDSKIILEG
EKERQGDFVFSAQKTGEYSFCFDNEMSTFTEKMIDIEISSEHEARTAQLPSKQGTSPEQTSVLEESIFKISGQLS
TISRNQKYFRTRENRNFSTVNSTEKRIVNFSVIQICLIVCMGALQVLVVRFFFQGARKGYDLIPLRQRADAGEID
LARPDKETVAATTEKTKNALTALISGAVAAQKPKNINVGQRKEATFVRYTPANQMGDNSKKQDRIIKIVERQRDP
MEPPKFKHKKIPRGPPSPPPPVMRSPPRKLTAEDQEMWRIPPPVSNWKNPKGFTVPLDKRLAADGRGLHDVTIND
KHAQFAEAVKMAERHAREVQQRALMQQRLAEQEKARKDDSLRALALKTREERLAQSSTPRASEESDSEDAEIRER
ERPDASGARKKSANCGRTEWAQSGGSRGFDSGFNEDNHYDKPLFAAQDAISSIYRPRANVNDDSFDDDAGDKEMA
KIHKISRFGEALGKGPFEARPMPRQTVGTRRTRSVRKEAADPFNVDKFLSEVDQSTSSKRGYGLQADGGGGGRQA
KRARVDDDDDEGGGGGE*
Coding >Ophcf2|07443
ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC
AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT
GCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGC
GAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAG
ATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCA
TCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCT
ACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAA
CGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGG
TTCTTCTTCCAGGGAGCACGCAAAGGCTATGATCTCATTCCGTTGCGGCAGCGGGCTGACGCTGGCGAGATCGAT
CTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGACCGCACTCATCAGC
GGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTTTGTGCGCTACACG
CCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCGACAACGCGATCCC
ATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCCTGTGATGCGCTCG
CCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAACTGGAAGAACCCC
AAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGTGACCATCAACGAC
AAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCAGCGGGCCCTGATG
CAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCTGAAGACGCGCGAA
GAGCGACTCGCTCAGTCATCAACTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGC
GAAAGGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGA
TCCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACGATAAGCCGCTGTTCGCTGCTCAGGACGCCATC
TCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCTTCGACGACGACGCGGGCGACAAGGAGATGGCC
AAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGGGACCTTTCGAGGCGCGGCCGATGCCGAGGCAA
ACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCAACGTCGACAAATTCCTGTCC
GAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCGGAGGAGGAGGTCGGCAGGCG
AAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA
Transcript >Ophcf2|07443
ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC
AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT
GCCGTCCAATCTGGAGGCTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGC
GAGAAGGAGCGTCAAGGCGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAG
ATGAGCACCTTTACGGAGAAGATGATCGATATCGAGATCTCAAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCA
TCCAAGCAGGGAACATCTCCCGAGCAAACGTCGGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCT
ACCATCTCGCGCAACCAGAAATACTTTCGAACTCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAA
CGGATTGTCAACTTTAGCGTGATTCAGATTTGCCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGG
TTCTTCTTCCAGGGAGCACGCAAAGGCTATGATCTCATTCCGTTGCGGCAGCGGGCTGACGCTGGCGAGATCGAT
CTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGACCGCACTCATCAGC
GGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTTTGTGCGCTACACG
CCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCGACAACGCGATCCC
ATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCCTGTGATGCGCTCG
CCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAACTGGAAGAACCCC
AAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGTGACCATCAACGAC
AAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCAGCGGGCCCTGATG
CAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCTGAAGACGCGCGAA
GAGCGACTCGCTCAGTCATCAACTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGC
GAAAGGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGA
TCCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACGATAAGCCGCTGTTCGCTGCTCAGGACGCCATC
TCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCTTCGACGACGACGCGGGCGACAAGGAGATGGCC
AAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGGGACCTTTCGAGGCGCGGCCGATGCCGAGGCAA
ACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCAACGTCGACAAATTCCTGTCC
GAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCGGAGGAGGAGGTCGGCAGGCG
AAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA
Gene >Ophcf2|07443
ATGAGACTGCCAACCATCGCAGCGGGCGTCTTTGCCTGTTTAGTCACCAATGTCGTCGCCACGGCGCTGACGTAC
AAGCTGGAAGCGGGCGAGAAGGCCTGCTTCTACGCCGAGACCAACAAGGAGAACGAGAAGATTGCGTTTTATTTT
GCCGTAGGCTTTCTTCGCTGAGGCATCTGGGTCTTCTGTGCTTATTCTGACCGCATCATAGGTCCAATCTGGAGG
CTCTTTCGATATCGACTACCGTGTTGAGGGCCCGGACTCGAAGATTATCCTCGAGGGCGAGAAGGAGCGTCAAGG
CGACTTCGTCTTCTCGGCTCAAAAGACGGGCGAATACTCTTTTTGTTTCGACAACGAGATGAGCACCTTTACGGA
GAAGATGATCGATATCGAGATCTCAGTCTGTTCACCCAGCGGCCCTACCGTCATACACAGGCATGCTGATTCTTT
CATGGTGCAGAGCGAGCACGAAGCCCGCACAGCCCAGCTTCCATCCAAGCAGGGAACATCTCCCGAGCAAACGTC
GGTCCTGGAGGAGTCGATATTCAAGATCTCAGGTCAACTATCTACCATCTCGCGCAACCAGAAATACTTTCGAAC
TCGGGAAAACCGCAACTTTAGCACCGTCAACAGCACAGAGAAACGGATTGTCAACTTTAGCGTGATTCAGATTTG
CCTTATCGTCTGCATGGGCGCCCTTCAGGTGTTGGTCGTCAGGTTCTTCTTCCAGGTATGTCCATAAGCCTATGA
TGATCGAGAGTAGTATCTGACAGCCTTTGCCAAACTCAGGGAGCACGCAAAGGCTATGTATGAAGCATTATAAGA
CTGTCTGAATGTGATTCGCGCTGTGTTGTTGGGCGAGGAGCAAAAGCGAGATACGGAAGCGTTACGAGGCGTCAC
AAGTGTTCAGAAGCCGTCGAAGGTACCGGCGAGCCTGCTTCTGAGGTGTTTCATCTACGCTCTCTTGTTCATTGT
GGTGCCCGGAACCTCGTCGGTTTCATGCGGCTTGAGTAGACATTGAAGACGAGGATGCTACATGTAGGTTGGGGG
AAGTCGGCTGATTCCTACATTATTTCGCGTGTTGGTAGACAGAGGCCTGTTGTATTAGGCTATATCTGCAGCCTC
TGAATATGGATAATGTAGCAAATGAACTTTTGAGGACGTTGGCATCGTGGGGACGAAATATCTTGTATTCCATGA
GCACTGAGCAGTGACGACAACCTCTCTCGGCTTGCTAAGGTTGAACGGATGACAAATATGCACCGCCACAGCGGA
CATGACTACGCCACACGTTGAAATTTACTAAGACTCCACCACGGACAGGAGCGGCTTCTTCTCCGTGAACTGGAA
ACTTCAAGTAACGACGAGGCGCCGATCCGCGATGGCCTCGATTGCCGCATCTCCAGGCTTCGCTGCCGCAGCCGA
AATACACGGGAGGAAATGAGGAAGAAGAATCTCGATCGCAGCAGCGCGGCCCGCGTATCGTCAGCGCCAGCCAGC
TGGACGAGAGCCAGGTTGTGCTAAGACGAACGGGACCGCCGCCTTATGGCCAGCGAGAAGGCTGGAGGCCACGGT
CACAGGAGGACTATGGAGATGGAGGCGCGTTTCCCGAGGTTCCGGTGGCTCAGTATCCGCTCGACATGGGCAGGA
AGCACGGAGTCAAGAGCAACGCGTTGGCGATACAGGTCGATTCTGAGGGCAAAGTCAAGTATGACGCCATCGCGA
GACGCGGCCACGGCGACGGCCGGATCATCCACACGTCCTTTAGGATCTCATTCCGTTGCGGCAGCGGGCTGACGC
TGGCGAGATCGATCTCGCCCGGCCAGACAAGGAGACGGTGGCGGCGACGACAGAAAAGACCAAGAACGCCTTGAC
CGCACTCATCAGCGGCGCCGTGGCAGCGCAGAAGCCAAAGAATATCAACGTCGGACAGCGAAAGGAAGCCACCTT
TGTGCGCTACACGCCGGCCAACCAAATGGGCGATAATTCCAAGAAGCAGGACCGCATCATCAAGATTGTCGAGCG
ACAACGCGATCCCATGGAGCCGCCCAAGTTCAAGCACAAGAAGATCCCCCGCGGTCCTCCTTCACCGCCGCCGCC
TGTGATGCGCTCGCCGCCCCGGAAGCTTACAGCCGAGGATCAAGAGATGTGGAGGATCCCTCCGCCCGTGTCCAA
CTGGAAGAACCCCAAGGGCTTTACCGTTCCTCTGGATAAGCGTCTGGCCGCTGACGGTCGTGGTCTGCACGACGT
GACCATCAACGACAAGCACGCGCAATTCGCCGAGGCCGTCAAGATGGCCGAACGGCACGCGCGCGAGGTGCAGCA
GCGGGCCCTGATGCAGCAGCGGCTCGCGGAGCAGGAGAAGGCTCGAAAGGATGACAGCCTCCGGGCATTGGCGCT
GAAGACGCGCGAAGAGCGACTCGCTCAGTCATCAAGTCGCGGAAGAAGAGAGTCGAGGACGTCTGGGTCACGGTC
ACGGTCGCGAAGCCACAGCTCCTCGAGCCTCGGAAGAATCTGACAGCGAAGACGCCGAGATCCGCGAACGCGAAA
GGCCCGACGCGAGCGGCGCAAGGAAGAAGAGCGCAAACTGCGGCAGAACAGAATGGGCGCAGAGCGGCGGATCCA
GGTCATGGCACGAGAGCAGGGACGCGACATCTCGGAGAAGATTGCGCTGGGGCTGGCGAAGCCGACTCAATCAAG
GAGAGCATGTACGACTCGCGTCTCTTCAACCGATCAGGGGCTTCGACAGCGGCTTTAACGAGGACAACCATTACG
ATAAGCCGCTGTTCGCTGCTCAGGACGCCATCTCCAGCATCTACCGTCCGCGAGCCAACGTCAATGACGACAGCT
TCGACGACGACGCGGGCGACAAGGAGATGGCCAAGATTCACAAGATTAGCCGCTTCGGCGAGGCTCTCGGCAAGG
GACCTTTCGAGGCGCGGCCGATGCCGAGGTGAGTTGCTCTTTTCCTTGTCTCTTTTCGTCCCTTGTCCATCTCTT
CAGAGTTCCCTGACAGGCAAACCGTAGGCACGCGAAGGACCCGTTCAGTTCGAAAGGAGGCAGCCGATCCTTTCA
ACGTCGACAAATTCCTGTCCGAGGTGGACCAGAGCACTTCGTCGAAGCGCGGCTACGGCCTCCAGGCGGATGGCG
GAGGAGGAGGTCGGCAGGCGAAACGGGCACGGGTCGACGATGACGATGACGAGGGCGGCGGTGGCGGCGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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