Protein ID | Ophcf2|07432 |
Gene name | |
Location | scaffold_11:53617..54606 |
Strand | + |
Gene length (bp) | 989 |
Transcript length (bp) | 933 |
Coding sequence length (bp) | 933 |
Protein length (aa) | 311 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09463 | Opy2 | Opy2 protein | 1.6E-06 | 31 | 67 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide | 0.1664 | 0.0954 | 0.3598 | 0.7096 | 0.1282 | 0.0216 | 0.1006 | 0.5319 | 0.2084 | 0.0382 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 92 | 114 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1003 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|07432 MMRAASPYPITLRDVDALRTVLEHAPQKRECAKCEEASKLQCPACPQGQVCQYTVPTDCTQCAQMVCMVDDSPQS SNNAASSGSGGSSGPSAAPIAGGVIGGVAVIATLTYLVWRFLIIPKRSRVPETIYSAKTPRDAEKDNASRFTHRS STHTVHSIASTVLTRASNIIQIAYIPGVTNRATPTSPSVLVPPVPPIPMQHQQGSPSSTQDDQRFFVPGNLRDST YSGISDYTDRTSYAPRSSIASTIYGRQAQVQSPAQTGMRAKPTVVSVRPGGATAAAAASNAPPCQASTSRGSVAP ALAPRAWPAP* |
Coding | >Ophcf2|07432 ATGATGCGGGCAGCATCGCCATATCCCATCACCTTGCGGGACGTTGACGCTCTGCGGACAGTTTTGGAACATGCG CCGCAGAAACGCGAATGTGCCAAATGCGAAGAGGCGTCCAAGCTTCAATGCCCCGCGTGTCCCCAGGGCCAGGTC TGCCAATATACGGTTCCTACCGATTGCACTCAGTGCGCCCAGATGGTGTGCATGGTCGACGACTCTCCACAGTCT TCCAATAACGCGGCCAGCAGCGGAAGCGGAGGCAGCAGCGGACCCAGCGCCGCGCCTATCGCGGGAGGCGTCATT GGAGGCGTCGCCGTCATCGCAACCCTCACATATCTCGTCTGGAGGTTCCTTATCATTCCCAAGCGATCACGCGTT CCCGAAACAATCTACAGCGCCAAGACGCCACGAGATGCCGAAAAGGACAACGCGTCCCGGTTCACGCACCGGTCA TCGACACATACGGTTCACTCCATCGCATCGACGGTGCTGACACGTGCCTCCAACATCATCCAAATAGCCTACATC CCTGGCGTCACTAACCGAGCAACGCCCACTTCGCCCTCGGTCCTCGTGCCACCCGTACCGCCCATCCCGATGCAG CACCAGCAAGGCAGCCCCAGCTCGACTCAGGATGATCAGCGCTTCTTCGTGCCCGGTAACCTGCGCGACTCGACC TACTCGGGCATCTCCGACTACACGGACCGCACCTCGTACGCCCCTCGCTCCAGTATCGCATCTACCATCTACGGC AGACAGGCCCAGGTGCAATCGCCGGCTCAGACGGGCATGCGGGCCAAGCCGACCGTCGTCAGCGTCAGGCCAGGT GGCGCCACAGCCGCAGCCGCCGCCTCCAACGCGCCCCCATGCCAAGCATCGACTTCGAGAGGTTCGGTGGCGCCG GCGCTCGCCCCAAGAGCGTGGCCAGCACCCTGA |
Transcript | >Ophcf2|07432 ATGATGCGGGCAGCATCGCCATATCCCATCACCTTGCGGGACGTTGACGCTCTGCGGACAGTTTTGGAACATGCG CCGCAGAAACGCGAATGTGCCAAATGCGAAGAGGCGTCCAAGCTTCAATGCCCCGCGTGTCCCCAGGGCCAGGTC TGCCAATATACGGTTCCTACCGATTGCACTCAGTGCGCCCAGATGGTGTGCATGGTCGACGACTCTCCACAGTCT TCCAATAACGCGGCCAGCAGCGGAAGCGGAGGCAGCAGCGGACCCAGCGCCGCGCCTATCGCGGGAGGCGTCATT GGAGGCGTCGCCGTCATCGCAACCCTCACATATCTCGTCTGGAGGTTCCTTATCATTCCCAAGCGATCACGCGTT CCCGAAACAATCTACAGCGCCAAGACGCCACGAGATGCCGAAAAGGACAACGCGTCCCGGTTCACGCACCGGTCA TCGACACATACGGTTCACTCCATCGCATCGACGGTGCTGACACGTGCCTCCAACATCATCCAAATAGCCTACATC CCTGGCGTCACTAACCGAGCAACGCCCACTTCGCCCTCGGTCCTCGTGCCACCCGTACCGCCCATCCCGATGCAG CACCAGCAAGGCAGCCCCAGCTCGACTCAGGATGATCAGCGCTTCTTCGTGCCCGGTAACCTGCGCGACTCGACC TACTCGGGCATCTCCGACTACACGGACCGCACCTCGTACGCCCCTCGCTCCAGTATCGCATCTACCATCTACGGC AGACAGGCCCAGGTGCAATCGCCGGCTCAGACGGGCATGCGGGCCAAGCCGACCGTCGTCAGCGTCAGGCCAGGT GGCGCCACAGCCGCAGCCGCCGCCTCCAACGCGCCCCCATGCCAAGCATCGACTTCGAGAGGTTCGGTGGCGCCG GCGCTCGCCCCAAGAGCGTGGCCAGCACCCTGA |
Gene | >Ophcf2|07432 ATGATGCGGGCAGCATCGCCATATCCCATCACCTTGCGGGACGTTGACGCTCTGCGGACAGGTGCGTGGCATGAT GCTAGCTAGCCTCCCCCTTCGACTGACGCCTCGCCTTCTCAGTTTTGGAACATGCGCCGCAGAAACGCGAATGTG CCAAATGCGAAGAGGCGTCCAAGCTTCAATGCCCCGCGTGTCCCCAGGGCCAGGTCTGCCAATATACGGTTCCTA CCGATTGCACTCAGTGCGCCCAGATGGTGTGCATGGTCGACGACTCTCCACAGTCTTCCAATAACGCGGCCAGCA GCGGAAGCGGAGGCAGCAGCGGACCCAGCGCCGCGCCTATCGCGGGAGGCGTCATTGGAGGCGTCGCCGTCATCG CAACCCTCACATATCTCGTCTGGAGGTTCCTTATCATTCCCAAGCGATCACGCGTTCCCGAAACAATCTACAGCG CCAAGACGCCACGAGATGCCGAAAAGGACAACGCGTCCCGGTTCACGCACCGGTCATCGACACATACGGTTCACT CCATCGCATCGACGGTGCTGACACGTGCCTCCAACATCATCCAAATAGCCTACATCCCTGGCGTCACTAACCGAG CAACGCCCACTTCGCCCTCGGTCCTCGTGCCACCCGTACCGCCCATCCCGATGCAGCACCAGCAAGGCAGCCCCA GCTCGACTCAGGATGATCAGCGCTTCTTCGTGCCCGGTAACCTGCGCGACTCGACCTACTCGGGCATCTCCGACT ACACGGACCGCACCTCGTACGCCCCTCGCTCCAGTATCGCATCTACCATCTACGGCAGACAGGCCCAGGTGCAAT CGCCGGCTCAGACGGGCATGCGGGCCAAGCCGACCGTCGTCAGCGTCAGGCCAGGTGGCGCCACAGCCGCAGCCG CCGCCTCCAACGCGCCCCCATGCCAAGCATCGACTTCGAGAGGTTCGGTGGCGCCGGCGCTCGCCCCAAGAGCGT GGCCAGCACCCTGA |