© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07428 |
| Gene name | |
| Location | scaffold_11:43227..44619 |
| Strand | + |
| Gene length (bp) | 1392 |
| Transcript length (bp) | 1284 |
| Coding sequence length (bp) | 1284 |
| Protein length (aa) | 428 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 6.5E-42 | 2 | 373 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 6.0E-09 | 17 | 163 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 111 | 133 | 22 |
| 4 | 143 | 160 | 17 |
| 5 | 207 | 229 | 22 |
| 6 | 244 | 266 | 22 |
| 7 | 303 | 325 | 22 |
| 8 | 329 | 351 | 22 |
| 9 | 364 | 383 | 19 |
| 10 | 387 | 409 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 0.03 | 0.00 | 0.14 |
| Alive | In ants, during behavior modification | 1.32 | 0.06 | 2.59 |
| Dead | In ants, recently dead | 1.32 | 0.01 | 2.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.284686 | no |
| Alive | Dead | 0.992453 | no |
| Dead | Fungus | 0.284686 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07428 MTNSSAALPALAADLGTSSTISNLSVAMYMLAMSIFPLWWSSFSELLGRRTVYLISTALFIVSALICALSSSAAM LIVFRVLTGGASASVQTVGAGTISDIWPSHQRGTAFGAFYLGPLVGPMISPIVGGLLSQRFGWRSTMYFLAGYGA LLWLMLLLLLPETLPRPPLDSSSALRHEARSRRSARLAKNVLVDPLGVILILRFPPVLLTVLVAALAFGALFIVN VTIQQAFSAHPYAFSQRTVGLLYLPTGLGYFVAALLGGRWIDHIMARRARKARRYDEKGRLVFLPEDRMGENMWL ANVIYPLGLLLFGWSISFGLHWLVPSAGGFLFGLASMMVFATSTTMLTEFVRKRSSTGVAVNNFVRNILSCVGTI VAAPWLDAAGPGYVFTAVSLFCLVAGLGGIWVLGRNAGQWRRQMDEALNDGP* |
| Coding | >Ophcf2|07428 ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGCAACATCGACGACGATGCTGACCGAGTTC GTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTCGTCCGCAATATCCTCAGCTGCGTCGGGACCATA GTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTCTTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCC GGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAATGGCGTCGCCAGATGGACGAGGCTCTCAATGAC GGGCCGTAG |
| Transcript | >Ophcf2|07428 ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGCAACATCGACGACGATGCTGACCGAGTTC GTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTCGTCCGCAATATCCTCAGCTGCGTCGGGACCATA GTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTCTTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCC GGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAATGGCGTCGCCAGATGGACGAGGCTCTCAATGAC GGGCCGTAG |
| Gene | >Ophcf2|07428 ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGTGCGAATTCCCTCTCCCCTTTTCTCTCCC CTTACCCTTTACTTGGTTCGTCGACAAAACCCATGACTTACACACACACACACATACACACACACACGTCACCAT CAGGCAACATCGACGACGATGCTGACCGAGTTCGTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTC GTCCGCAATATCCTCAGCTGCGTCGGGACCATAGTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTC TTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCCGGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAA TGGCGTCGCCAGATGGACGAGGCTCTCAATGACGGGCCGTAG |