Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07428
Gene name
Locationscaffold_11:43227..44619
Strand+
Gene length (bp)1392
Transcript length (bp)1284
Coding sequence length (bp)1284
Protein length (aa) 428

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 6.5E-42 2 373
PF00083 Sugar_tr Sugar (and other) transporter 6.0E-09 17 163

GO

GO Term Description Terminal node
GO:0022857 transmembrane transporter activity Yes
GO:0055085 transmembrane transport Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0006810 transport No
GO:0009987 cellular process No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0051234 establishment of localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 58 80 22
3 111 133 22
4 143 160 17
5 207 229 22
6 244 266 22
7 303 325 22
8 329 351 22
9 364 383 19
10 387 409 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 0.03 0.00 0.14
Alive In ants, during behavior modification 1.32 0.06 2.59
Dead In ants, recently dead 1.32 0.01 2.63

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.284686 no
Alive Dead 0.992453 no
Dead Fungus 0.284686 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07428
MTNSSAALPALAADLGTSSTISNLSVAMYMLAMSIFPLWWSSFSELLGRRTVYLISTALFIVSALICALSSSAAM
LIVFRVLTGGASASVQTVGAGTISDIWPSHQRGTAFGAFYLGPLVGPMISPIVGGLLSQRFGWRSTMYFLAGYGA
LLWLMLLLLLPETLPRPPLDSSSALRHEARSRRSARLAKNVLVDPLGVILILRFPPVLLTVLVAALAFGALFIVN
VTIQQAFSAHPYAFSQRTVGLLYLPTGLGYFVAALLGGRWIDHIMARRARKARRYDEKGRLVFLPEDRMGENMWL
ANVIYPLGLLLFGWSISFGLHWLVPSAGGFLFGLASMMVFATSTTMLTEFVRKRSSTGVAVNNFVRNILSCVGTI
VAAPWLDAAGPGYVFTAVSLFCLVAGLGGIWVLGRNAGQWRRQMDEALNDGP*
Coding >Ophcf2|07428
ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG
GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA
ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG
CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT
ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT
CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC
CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC
CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC
ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC
GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC
ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT
AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG
GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT
TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGCAACATCGACGACGATGCTGACCGAGTTC
GTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTCGTCCGCAATATCCTCAGCTGCGTCGGGACCATA
GTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTCTTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCC
GGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAATGGCGTCGCCAGATGGACGAGGCTCTCAATGAC
GGGCCGTAG
Transcript >Ophcf2|07428
ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG
GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA
ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG
CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT
ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT
CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC
CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC
CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC
ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC
GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC
ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT
AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG
GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT
TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGCAACATCGACGACGATGCTGACCGAGTTC
GTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTCGTCCGCAATATCCTCAGCTGCGTCGGGACCATA
GTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTCTTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCC
GGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAATGGCGTCGCCAGATGGACGAGGCTCTCAATGAC
GGGCCGTAG
Gene >Ophcf2|07428
ATGACCAACTCATCAGCCGCCCTTCCCGCCCTGGCTGCCGACCTCGGCACCTCGTCGACGATATCAAACCTCTCG
GTGGCAATGTACATGCTGGCCATGTCCATCTTCCCTCTCTGGTGGTCCTCCTTCTCCGAGCTCCTCGGCCGAAGA
ACAGTATACCTCATCTCAACAGCCCTCTTCATCGTCTCGGCCCTCATCTGTGCTCTCAGCTCCTCGGCCGCCATG
CTCATCGTCTTCCGTGTCTTGACGGGCGGCGCTTCTGCCAGCGTTCAGACCGTCGGCGCCGGCACCATCTCCGAT
ATATGGCCCTCTCATCAACGAGGCACCGCCTTCGGAGCCTTTTATCTCGGACCCCTTGTCGGACCCATGATCTCT
CCCATCGTCGGCGGCCTCCTTTCGCAACGCTTCGGCTGGCGTTCTACCATGTACTTCCTCGCCGGCTACGGTGCC
CTGCTGTGGCTGATGCTTCTCCTCCTGCTGCCGGAGACGCTTCCCCGACCACCGCTTGACTCCTCCTCGGCCCTC
CGTCACGAGGCCCGGAGTCGGCGTTCGGCTCGTCTGGCCAAAAACGTCCTCGTCGATCCCCTCGGCGTCATCCTC
ATCCTTCGCTTCCCCCCCGTCCTGCTGACGGTCCTCGTCGCCGCCCTCGCCTTTGGCGCCCTCTTCATCGTTAAC
GTAACCATTCAGCAGGCCTTTTCCGCTCACCCCTACGCCTTCTCACAGCGCACAGTCGGCCTCCTCTATCTGCCC
ACCGGCCTCGGTTACTTCGTCGCCGCCCTACTGGGAGGCCGATGGATAGATCACATCATGGCCCGTCGCGCCCGT
AAAGCCCGTCGATACGACGAAAAGGGCCGTCTCGTCTTTCTGCCAGAGGACCGGATGGGTGAGAACATGTGGCTG
GCCAATGTCATCTATCCCCTCGGTCTGCTCCTCTTCGGCTGGTCCATCAGCTTCGGCCTCCACTGGCTCGTGCCT
TCAGCCGGAGGCTTTCTCTTTGGCCTGGCCTCCATGATGGTCTTTGTGCGAATTCCCTCTCCCCTTTTCTCTCCC
CTTACCCTTTACTTGGTTCGTCGACAAAACCCATGACTTACACACACACACACATACACACACACACGTCACCAT
CAGGCAACATCGACGACGATGCTGACCGAGTTCGTCCGCAAACGGAGCTCTACCGGCGTGGCCGTAAACAACTTC
GTCCGCAATATCCTCAGCTGCGTCGGGACCATAGTCGCCGCCCCCTGGCTCGACGCCGCCGGTCCGGGCTACGTC
TTCACCGCCGTCTCTCTCTTCTGCCTCGTCGCCGGCCTCGGAGGCATCTGGGTGCTGGGCAGAAACGCGGGTCAA
TGGCGTCGCCAGATGGACGAGGCTCTCAATGACGGGCCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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