Protein ID | Ophcf2|07357 |
Gene name | |
Location | scaffold_09:1300194..1301334 |
Strand | - |
Gene length (bp) | 1140 |
Transcript length (bp) | 1140 |
Coding sequence length (bp) | 1140 |
Protein length (aa) | 380 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13424 | TPR_12 | Tetratricopeptide repeat | 6.9E-08 | 26 | 83 |
PF13432 | TPR_16 | Tetratricopeptide repeat | 1.2E-05 | 22 | 79 |
PF13181 | TPR_8 | Tetratricopeptide repeat | 1.1E-03 | 53 | 83 |
PF13176 | TPR_7 | Tetratricopeptide repeat | 1.1E-02 | 54 | 85 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|07357 MAPRRPSKKKEPGPSSMLADAETQLGAGNIDEAIALATKALEVTGSGGDFELRALNLLGVLHVENGDEDEARGYL ERAVSLDEEGLVDEKIGGGPEKFLFLAQLSEEGGIDSVRWFERGASALRKRIQALSAMASRTTKQQAELDEKQQQ LGGVLCAVAEVYMTDLSWEDDAESRCEALVTEAMMIAPDSAETWQTVANVRVSQERTDEARAALKRSLDLWRDLP PENPAIPEFPTRIALARLLLETKMEEEALTVLERLVTEDDESVEAWYLGGWCLYVTGEKQQQQQQRQEQNGGGSD EWKETWSTARKWLAQCLKLHARLEYEDDRLGDHAVELFESINQELGAMPEGEEDDWEDEDGEDDVVDDDDDDDDE EMRD* |
Coding | >Ophcf2|07357 ATGGCTCCCCGTCGACCCAGCAAGAAAAAGGAGCCGGGACCGAGCTCGATGCTCGCGGATGCTGAGACGCAGCTG GGGGCGGGAAACATCGACGAAGCCATTGCACTGGCGACGAAAGCTCTCGAAGTCACGGGTTCAGGCGGCGACTTC GAACTGCGGGCGCTGAATCTGCTGGGCGTGCTTCATGTCGAGAACGGCGACGAGGACGAGGCACGTGGATATTTG GAGCGGGCGGTCAGCCTAGATGAGGAGGGCCTGGTGGACGAGAAAATAGGGGGAGGGCCGGAGAAGTTTCTCTTC CTGGCGCAACTAAGTGAAGAGGGAGGAATCGATAGCGTGCGATGGTTTGAGCGTGGGGCGTCGGCGTTGAGGAAA CGGATACAGGCCCTTTCCGCCATGGCCTCCAGAACAACCAAGCAACAGGCAGAACTCGATGAGAAGCAGCAACAG CTCGGCGGCGTTTTATGCGCCGTGGCCGAGGTTTACATGACGGACTTGTCGTGGGAGGACGACGCAGAGAGCCGG TGCGAGGCGCTCGTCACCGAGGCCATGATGATCGCTCCAGACTCGGCAGAGACATGGCAGACGGTGGCCAACGTT CGCGTCTCGCAGGAGCGTACCGACGAAGCTAGAGCGGCTTTGAAGCGAAGTCTGGATCTGTGGCGGGACCTGCCG CCCGAGAACCCTGCCATTCCCGAGTTTCCAACCAGGATCGCCCTCGCGCGCCTGCTCCTTGAGACTAAGATGGAG GAGGAGGCGCTGACGGTACTGGAGAGACTGGTGACGGAGGATGATGAAAGTGTCGAGGCCTGGTACCTCGGCGGC TGGTGTCTGTACGTGACGGGTGAGAAGCAGCAGCAGCAGCAGCAGCGCCAAGAGCAAAACGGCGGCGGCTCGGAC GAGTGGAAGGAGACGTGGTCGACGGCTCGGAAGTGGCTGGCGCAGTGTCTGAAGCTACACGCGAGGCTGGAGTAC GAGGACGACAGGCTCGGCGACCACGCGGTCGAACTATTTGAGTCTATTAACCAGGAGCTCGGGGCGATGCCGGAG GGTGAGGAGGATGACTGGGAAGATGAGGACGGCGAGGACGATGTTGTCGATGATGATGATGATGATGATGATGAG GAGATGCGGGACTGA |
Transcript | >Ophcf2|07357 ATGGCTCCCCGTCGACCCAGCAAGAAAAAGGAGCCGGGACCGAGCTCGATGCTCGCGGATGCTGAGACGCAGCTG GGGGCGGGAAACATCGACGAAGCCATTGCACTGGCGACGAAAGCTCTCGAAGTCACGGGTTCAGGCGGCGACTTC GAACTGCGGGCGCTGAATCTGCTGGGCGTGCTTCATGTCGAGAACGGCGACGAGGACGAGGCACGTGGATATTTG GAGCGGGCGGTCAGCCTAGATGAGGAGGGCCTGGTGGACGAGAAAATAGGGGGAGGGCCGGAGAAGTTTCTCTTC CTGGCGCAACTAAGTGAAGAGGGAGGAATCGATAGCGTGCGATGGTTTGAGCGTGGGGCGTCGGCGTTGAGGAAA CGGATACAGGCCCTTTCCGCCATGGCCTCCAGAACAACCAAGCAACAGGCAGAACTCGATGAGAAGCAGCAACAG CTCGGCGGCGTTTTATGCGCCGTGGCCGAGGTTTACATGACGGACTTGTCGTGGGAGGACGACGCAGAGAGCCGG TGCGAGGCGCTCGTCACCGAGGCCATGATGATCGCTCCAGACTCGGCAGAGACATGGCAGACGGTGGCCAACGTT CGCGTCTCGCAGGAGCGTACCGACGAAGCTAGAGCGGCTTTGAAGCGAAGTCTGGATCTGTGGCGGGACCTGCCG CCCGAGAACCCTGCCATTCCCGAGTTTCCAACCAGGATCGCCCTCGCGCGCCTGCTCCTTGAGACTAAGATGGAG GAGGAGGCGCTGACGGTACTGGAGAGACTGGTGACGGAGGATGATGAAAGTGTCGAGGCCTGGTACCTCGGCGGC TGGTGTCTGTACGTGACGGGTGAGAAGCAGCAGCAGCAGCAGCAGCGCCAAGAGCAAAACGGCGGCGGCTCGGAC GAGTGGAAGGAGACGTGGTCGACGGCTCGGAAGTGGCTGGCGCAGTGTCTGAAGCTACACGCGAGGCTGGAGTAC GAGGACGACAGGCTCGGCGACCACGCGGTCGAACTATTTGAGTCTATTAACCAGGAGCTCGGGGCGATGCCGGAG GGTGAGGAGGATGACTGGGAAGATGAGGACGGCGAGGACGATGTTGTCGATGATGATGATGATGATGATGATGAG GAGATGCGGGACTGA |
Gene | >Ophcf2|07357 ATGGCTCCCCGTCGACCCAGCAAGAAAAAGGAGCCGGGACCGAGCTCGATGCTCGCGGATGCTGAGACGCAGCTG GGGGCGGGAAACATCGACGAAGCCATTGCACTGGCGACGAAAGCTCTCGAAGTCACGGGTTCAGGCGGCGACTTC GAACTGCGGGCGCTGAATCTGCTGGGCGTGCTTCATGTCGAGAACGGCGACGAGGACGAGGCACGTGGATATTTG GAGCGGGCGGTCAGCCTAGATGAGGAGGGCCTGGTGGACGAGAAAATAGGGGGAGGGCCGGAGAAGTTTCTCTTC CTGGCGCAACTAAGTGAAGAGGGAGGAATCGATAGCGTGCGATGGTTTGAGCGTGGGGCGTCGGCGTTGAGGAAA CGGATACAGGCCCTTTCCGCCATGGCCTCCAGAACAACCAAGCAACAGGCAGAACTCGATGAGAAGCAGCAACAG CTCGGCGGCGTTTTATGCGCCGTGGCCGAGGTTTACATGACGGACTTGTCGTGGGAGGACGACGCAGAGAGCCGG TGCGAGGCGCTCGTCACCGAGGCCATGATGATCGCTCCAGACTCGGCAGAGACATGGCAGACGGTGGCCAACGTT CGCGTCTCGCAGGAGCGTACCGACGAAGCTAGAGCGGCTTTGAAGCGAAGTCTGGATCTGTGGCGGGACCTGCCG CCCGAGAACCCTGCCATTCCCGAGTTTCCAACCAGGATCGCCCTCGCGCGCCTGCTCCTTGAGACTAAGATGGAG GAGGAGGCGCTGACGGTACTGGAGAGACTGGTGACGGAGGATGATGAAAGTGTCGAGGCCTGGTACCTCGGCGGC TGGTGTCTGTACGTGACGGGTGAGAAGCAGCAGCAGCAGCAGCAGCGCCAAGAGCAAAACGGCGGCGGCTCGGAC GAGTGGAAGGAGACGTGGTCGACGGCTCGGAAGTGGCTGGCGCAGTGTCTGAAGCTACACGCGAGGCTGGAGTAC GAGGACGACAGGCTCGGCGACCACGCGGTCGAACTATTTGAGTCTATTAACCAGGAGCTCGGGGCGATGCCGGAG GGTGAGGAGGATGACTGGGAAGATGAGGACGGCGAGGACGATGTTGTCGATGATGATGATGATGATGATGATGAG GAGATGCGGGACTGA |