Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07319
Gene name
Locationscaffold_09:1219492..1220071
Strand-
Gene length (bp)579
Transcript length (bp)432
Coding sequence length (bp)432
Protein length (aa) 144

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4 7.0E-27 33 139

GO

GO Term Description Terminal node
GO:0006352 DNA-templated transcription, initiation Yes
GO:0030880 RNA polymerase complex Yes
GO:1901360 organic cyclic compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:0018130 heterocycle biosynthetic process No
GO:0032991 protein-containing complex No
GO:0043170 macromolecule metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0009058 biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0008152 metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0009987 cellular process No
GO:1990234 transferase complex No
GO:0071704 organic substance metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0005575 cellular_component No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0061695 transferase complex, transferring phosphorus-containing groups No
GO:0044249 cellular biosynthetic process No
GO:0140535 intracellular protein-containing complex No
GO:0019438 aromatic compound biosynthetic process No
GO:0008150 biological_process No
GO:1902494 catalytic complex No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.6107 0.6854 0.0257 0.0562 0.0894 0.0071 0.0251 0.0193 0.0075 0.0064

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 95.09 44.47 145.72
Alive In ants, during behavior modification 113.66 55.21 172.11
Dead In ants, recently dead 92.29 43.15 141.44

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.486726 no
Alive Dead 0.323786 no
Dead Fungus 0.921809 no

Orthologs

Orthofinder run ID4
Orthogroup1928
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6120
Ophiocordyceps australis map64 (Brazil) OphauB2|7774
Ophiocordyceps camponoti-floridani Ophcf2|07319 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|4439
Ophiocordyceps kimflemingae Ophio5|8362
Ophiocordyceps subramaniannii Hirsu2|2059

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07319
MSNKMSRPKPPPAGNEEASATLNLGEFQNVDTLTLSEAALVLNALVTKRRNDRKNVNETEMLSQTMSYLDHFARF
TQKENVEAVERLLSSHKDLAKFERAQLGSLCCENADEAKTLIPSLADKIKDEDLQELLDEISKLQSHH*
Coding >Ophcf2|07319
ATGTCGAATAAGATGTCGCGTCCGAAGCCGCCTCCGGCTGGCAACGAAGAGGCTTCAGCGACTCTCAACCTCGGC
GAATTCCAAAACGTCGATACCCTGACGCTCTCGGAAGCCGCTCTCGTTTTAAACGCCCTCGTCACCAAGCGCCGC
AACGACCGTAAAAACGTGAACGAAACAGAAATGCTGAGCCAAACGATGAGCTATCTCGATCACTTCGCTCGCTTT
ACGCAAAAGGAAAATGTTGAGGCTGTGGAGCGGCTGCTAAGCTCACACAAGGACCTTGCAAAGTTTGAGCGCGCA
CAACTCGGCTCGCTATGCTGCGAGAACGCCGATGAAGCCAAGACGCTGATTCCCTCCCTGGCCGACAAAATCAAG
GACGAGGATTTGCAGGAGCTTCTCGATGAGATTTCCAAGCTGCAGAGTCATCACTAA
Transcript >Ophcf2|07319
ATGTCGAATAAGATGTCGCGTCCGAAGCCGCCTCCGGCTGGCAACGAAGAGGCTTCAGCGACTCTCAACCTCGGC
GAATTCCAAAACGTCGATACCCTGACGCTCTCGGAAGCCGCTCTCGTTTTAAACGCCCTCGTCACCAAGCGCCGC
AACGACCGTAAAAACGTGAACGAAACAGAAATGCTGAGCCAAACGATGAGCTATCTCGATCACTTCGCTCGCTTT
ACGCAAAAGGAAAATGTTGAGGCTGTGGAGCGGCTGCTAAGCTCACACAAGGACCTTGCAAAGTTTGAGCGCGCA
CAACTCGGCTCGCTATGCTGCGAGAACGCCGATGAAGCCAAGACGCTGATTCCCTCCCTGGCCGACAAAATCAAG
GACGAGGATTTGCAGGAGCTTCTCGATGAGATTTCCAAGCTGCAGAGTCATCACTAA
Gene >Ophcf2|07319
ATGTCGAATAAGATGTCGCGTCCGAAGCCGCCTCCGGCTGGCAACGAAGAGGCTTCAGCGACTCTCAACCTCGGC
GAATTCCAAAACGTCGATACCCTGACGCTCTCGGAAGCCGCTCTCGTTTTAAACGCCCTCGTCACCAAGCGCCGC
AACGACCGTAAAAACGTGAACGAAACAGAGTGCGTTCAATGCACCCCCCCCCCCCCCCCCCCCAAACCATCCTCG
TTCGCATACTCTACTCATCTCAAACCATGTTCTCTCTCGCGCAGAATGCTGAGCCAAACGATGAGCTATCTCGAT
CACTTCGCTCGCTTTACGCAAAAGGAAAATGTTGAGGCTGTGGAGCGGCTGCTAAGCTCACACAAGGACCTTGCA
AAGTTTGAGCGCGCACAACTCGGTCTGTCGCTTTTGTCGCCATGGACGTGGGCTAAGCTGACGTTGCTTTCGGCG
CTAGGCTCGCTATGCTGCGAGAACGCCGATGAAGCCAAGACGCTGATTCCCTCCCTGGCCGACAAAATCAAGGAC
GAGGATTTGCAGGAGCTTCTCGATGAGATTTCCAAGCTGCAGAGTCATCACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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