© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07276 |
| Gene name | |
| Location | scaffold_09:1094832..1095153 |
| Strand | - |
| Gene length (bp) | 321 |
| Transcript length (bp) | 321 |
| Coding sequence length (bp) | 321 |
| Protein length (aa) | 107 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08636 | Pkr1 | ER protein Pkr1 | 6.1E-29 | 4 | 72 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0043933 | protein-containing complex organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0009987 | cellular process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 48 | 67 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 92.59 | 36.37 | 148.81 |
| Alive | In ants, during behavior modification | 272.11 | 138.61 | 405.61 |
| Dead | In ants, recently dead | 227.53 | 113.63 | 341.44 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.367960 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07276 MASSLATDLWDAIFTPGTTPALLRATNMSFACLQLVLGALLAATTSPHFVVLSGLCAVLWYSVNWFVAEMEAETR KMSSSPSRGDESSDTEVEESVAGSRWAGVEA* |
| Coding | >Ophcf2|07276 ATGGCGTCTTCGTTGGCAACGGATCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATGTCCTTCGCCTGCCTGCAGCTCGTCCTAGGCGCGCTGCTAGCCGCGACGACGAGTCCGCACTTTGTC GTGCTCTCGGGATTGTGCGCCGTGCTGTGGTATTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGACGCGG AAGATGTCGTCGTCTCCTTCCAGGGGGGACGAGAGTAGCGATACTGAGGTTGAGGAGTCGGTGGCGGGAAGTCGG TGGGCGGGGGTTGAGGCTTAG |
| Transcript | >Ophcf2|07276 ATGGCGTCTTCGTTGGCAACGGATCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATGTCCTTCGCCTGCCTGCAGCTCGTCCTAGGCGCGCTGCTAGCCGCGACGACGAGTCCGCACTTTGTC GTGCTCTCGGGATTGTGCGCCGTGCTGTGGTATTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGACGCGG AAGATGTCGTCGTCTCCTTCCAGGGGGGACGAGAGTAGCGATACTGAGGTTGAGGAGTCGGTGGCGGGAAGTCGG TGGGCGGGGGTTGAGGCTTAG |
| Gene | >Ophcf2|07276 ATGGCGTCTTCGTTGGCAACGGATCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATGTCCTTCGCCTGCCTGCAGCTCGTCCTAGGCGCGCTGCTAGCCGCGACGACGAGTCCGCACTTTGTC GTGCTCTCGGGATTGTGCGCCGTGCTGTGGTATTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGACGCGG AAGATGTCGTCGTCTCCTTCCAGGGGGGACGAGAGTAGCGATACTGAGGTTGAGGAGTCGGTGGCGGGAAGTCGG TGGGCGGGGGTTGAGGCTTAG |