Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07267
Gene name
Locationscaffold_09:1063904..1064617
Strand-
Gene length (bp)713
Transcript length (bp)651
Coding sequence length (bp)651
Protein length (aa) 217

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08229 SHR3_chaperone ER membrane protein SH3 6.5E-73 19 215

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 75 97 22
3 104 126 22
4 164 182 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07267
MAPYVDYSKTTRSKSYRGSGSFATFMIIGPTCFFLGILFASFPYDFPLLWTKEPAGDDYYDQLEAHLKFLHRSPP
LIGRMLNIVVSVGFLGLFAKLFRPSEANFLFDGASLILYTIGVAVYVSNIVKGLRTLSSGLWDSDEFRSSREGRF
EGEYVLGREDSLKVLAASNTILALVLIGVLVLQAGQWYAEKRESDDEDSVQQAPVGKAVATTKKKQ*
Coding >Ophcf2|07267
ATGGCGCCTTACGTCGATTACTCCAAGACAACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCTTTTGCGACCTTT
ATGATCATTGGACCGACCTGCTTCTTCCTCGGCATTCTCTTCGCCTCTTTTCCCTACGATTTCCCTCTTCTCTGG
ACCAAGGAGCCCGCCGGCGATGACTACTATGACCAACTCGAGGCGCACCTCAAGTTTTTGCACCGGTCGCCGCCC
CTCATCGGCCGCATGCTCAACATCGTCGTGAGCGTCGGCTTCCTCGGTCTCTTCGCCAAACTCTTCCGTCCCAGT
GAGGCCAATTTTCTCTTCGACGGCGCGTCCCTGATCCTCTACACCATTGGCGTGGCCGTCTACGTTTCCAACATT
GTCAAGGGCCTACGCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAGCAGTCGCGAGGGCCGCTTC
GAGGGAGAATACGTCCTGGGACGCGAGGACAGTCTCAAGGTGCTGGCCGCGAGCAACACCATCCTGGCCCTGGTC
CTCATCGGCGTCCTCGTTCTTCAGGCTGGACAGTGGTATGCCGAGAAGAGGGAGTCGGATGACGAGGATAGCGTG
CAGCAGGCTCCGGTCGGAAAAGCCGTGGCAACGACCAAGAAAAAGCAGTGA
Transcript >Ophcf2|07267
ATGGCGCCTTACGTCGATTACTCCAAGACAACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCTTTTGCGACCTTT
ATGATCATTGGACCGACCTGCTTCTTCCTCGGCATTCTCTTCGCCTCTTTTCCCTACGATTTCCCTCTTCTCTGG
ACCAAGGAGCCCGCCGGCGATGACTACTATGACCAACTCGAGGCGCACCTCAAGTTTTTGCACCGGTCGCCGCCC
CTCATCGGCCGCATGCTCAACATCGTCGTGAGCGTCGGCTTCCTCGGTCTCTTCGCCAAACTCTTCCGTCCCAGT
GAGGCCAATTTTCTCTTCGACGGCGCGTCCCTGATCCTCTACACCATTGGCGTGGCCGTCTACGTTTCCAACATT
GTCAAGGGCCTACGCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAGCAGTCGCGAGGGCCGCTTC
GAGGGAGAATACGTCCTGGGACGCGAGGACAGTCTCAAGGTGCTGGCCGCGAGCAACACCATCCTGGCCCTGGTC
CTCATCGGCGTCCTCGTTCTTCAGGCTGGACAGTGGTATGCCGAGAAGAGGGAGTCGGATGACGAGGATAGCGTG
CAGCAGGCTCCGGTCGGAAAAGCCGTGGCAACGACCAAGAAAAAGCAGTGA
Gene >Ophcf2|07267
ATGGCGCCTTACGTCGATTACTCCAAGACAACCAGGTCAAAGAGCTACCGAGGCTCAGGCTCTTTTGCGACCTTT
ATGATCATTGGACGTGCGTTGACCCATCCCCCTTTCCCCGCTGCCTAAACGAGTCTCGAGGCCGACGATTCTTAG
CGACCTGCTTCTTCCTCGGCATTCTCTTCGCCTCTTTTCCCTACGATTTCCCTCTTCTCTGGACCAAGGAGCCCG
CCGGCGATGACTACTATGACCAACTCGAGGCGCACCTCAAGTTTTTGCACCGGTCGCCGCCCCTCATCGGCCGCA
TGCTCAACATCGTCGTGAGCGTCGGCTTCCTCGGTCTCTTCGCCAAACTCTTCCGTCCCAGTGAGGCCAATTTTC
TCTTCGACGGCGCGTCCCTGATCCTCTACACCATTGGCGTGGCCGTCTACGTTTCCAACATTGTCAAGGGCCTAC
GCACTCTCAGCTCGGGCCTCTGGGACAGCGACGAGTTCCGCAGCAGTCGCGAGGGCCGCTTCGAGGGAGAATACG
TCCTGGGACGCGAGGACAGTCTCAAGGTGCTGGCCGCGAGCAACACCATCCTGGCCCTGGTCCTCATCGGCGTCC
TCGTTCTTCAGGCTGGACAGTGGTATGCCGAGAAGAGGGAGTCGGATGACGAGGATAGCGTGCAGCAGGCTCCGG
TCGGAAAAGCCGTGGCAACGACCAAGAAAAAGCAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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