© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|07265 |
| Gene name | |
| Location | scaffold_09:1061106..1061850 |
| Strand | + |
| Gene length (bp) | 744 |
| Transcript length (bp) | 576 |
| Coding sequence length (bp) | 576 |
| Protein length (aa) | 192 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03073 | TspO_MBR | TspO/MBR family | 1.5E-45 | 22 | 173 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Transmembrane domain | 0.0727 | 0.0565 | 0.0913 | 0.1063 | 0.5486 | 0.0679 | 0.5637 | 0.2199 | 0.2827 | 0.1824 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 64 | 86 | 22 |
| 3 | 99 | 118 | 19 |
| 4 | 123 | 145 | 22 |
| 5 | 152 | 174 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3182 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|07265 MTTYMSSITIPAAVLQHPAASVLLPVALGTAVGFGTRPSETKKTYLALKQPPLRPPPWAFGPVWTLLYGIMGYAS YRVATIGLGPFASPETVRVTRQSLTLYTVQLGLNLAWMPLFFVAKRPVEATIDIVTLLGLNGYLAYLWHSVDHVA GLCQVPYIGWLSFATYLCAGAGYLNDWDLSDKTARVADKEK* |
| Coding | >Ophcf2|07265 ATGACAACCTACATGTCAAGCATCACCATCCCGGCCGCCGTGCTCCAGCACCCGGCCGCCTCGGTTCTTCTCCCC GTCGCCCTCGGCACCGCCGTCGGCTTCGGCACTCGCCCTTCTGAGACGAAAAAGACATACCTCGCTCTTAAGCAG CCGCCGCTGCGACCTCCGCCTTGGGCCTTTGGTCCCGTCTGGACGTTGCTCTACGGGATCATGGGCTACGCTTCG TATCGTGTCGCCACCATCGGCCTCGGGCCCTTTGCCTCCCCCGAGACCGTCCGCGTCACCAGGCAAAGCTTAACG CTATACACTGTCCAACTCGGCCTCAACCTCGCATGGATGCCCCTCTTCTTCGTCGCCAAGCGTCCCGTAGAGGCC ACCATCGACATCGTCACCCTGCTCGGCCTCAATGGCTACCTGGCCTACCTGTGGCATTCGGTCGACCACGTAGCC GGCCTGTGTCAGGTGCCTTATATCGGCTGGCTGAGCTTTGCCACCTATCTGTGCGCTGGCGCCGGATACCTCAAC GACTGGGACCTTTCAGACAAGACGGCTCGCGTGGCTGACAAGGAGAAGTAG |
| Transcript | >Ophcf2|07265 ATGACAACCTACATGTCAAGCATCACCATCCCGGCCGCCGTGCTCCAGCACCCGGCCGCCTCGGTTCTTCTCCCC GTCGCCCTCGGCACCGCCGTCGGCTTCGGCACTCGCCCTTCTGAGACGAAAAAGACATACCTCGCTCTTAAGCAG CCGCCGCTGCGACCTCCGCCTTGGGCCTTTGGTCCCGTCTGGACGTTGCTCTACGGGATCATGGGCTACGCTTCG TATCGTGTCGCCACCATCGGCCTCGGGCCCTTTGCCTCCCCCGAGACCGTCCGCGTCACCAGGCAAAGCTTAACG CTATACACTGTCCAACTCGGCCTCAACCTCGCATGGATGCCCCTCTTCTTCGTCGCCAAGCGTCCCGTAGAGGCC ACCATCGACATCGTCACCCTGCTCGGCCTCAATGGCTACCTGGCCTACCTGTGGCATTCGGTCGACCACGTAGCC GGCCTGTGTCAGGTGCCTTATATCGGCTGGCTGAGCTTTGCCACCTATCTGTGCGCTGGCGCCGGATACCTCAAC GACTGGGACCTTTCAGACAAGACGGCTCGCGTGGCTGACAAGGAGAAGTAG |
| Gene | >Ophcf2|07265 ATGACAACCTACATGTCAAGCATCACCATCCCGGCCGCCGTGCTCCAGCACCCGGCCGCCTCGGTTCTTCTCCCC GTCGCCCTCGGCACCGCCGTCGGCTTCGGCACTCGCCGTAAGCACCCGTCATCCGTCTTCTCCTCTCCCGTCTCT TGTCACGGTATAAACTGAAGAAGCGGATTCTCTGTCGCCTTGATCTGTCGACGATGCAGCTTCTGAGACGAAAAA GACATACCTCGCTCTTAAGCAGCCGCCGCTGCGACCTCCGCCTTGGGCCTTTGGTCCCGTCTGGACGTTGCTCTA CGGGTAGGCCGTGTCATTCTCGAGGGATTCTCTTCGCACCGGCTGAAGCTCGTCGTCTTGCGTCATCGCTCTAGG ATCATGGGCTACGCTTCGTATCGTGTCGCCACCATCGGCCTCGGGCCCTTTGCCTCCCCCGAGACCGTCCGCGTC ACCAGGCAAAGCTTAACGCTATACACTGTCCAACTCGGCCTCAACCTCGCATGGATGCCCCTCTTCTTCGTCGCC AAGCGTCCCGTAGAGGCCACCATCGACATCGTCACCCTGCTCGGCCTCAATGGCTACCTGGCCTACCTGTGGCAT TCGGTCGACCACGTAGCCGGCCTGTGTCAGGTGCCTTATATCGGCTGGCTGAGCTTTGCCACCTATCTGTGCGCT GGCGCCGGATACCTCAACGACTGGGACCTTTCAGACAAGACGGCTCGCGTGGCTGACAAGGAGAAGTAG |