Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|07260
Gene name
Locationscaffold_09:1048830..1049982
Strand-
Gene length (bp)1152
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12505 DUF3712 Protein of unknown function (DUF3712) 1.7E-13 122 242

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 32 54 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 39.61 20.33 58.89
Alive In ants, during behavior modification 2739.93 869.35 4610.50
Dead In ants, recently dead 3258.64 1037.52 5479.75

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.566166 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|07260
MSHDSKNMVSQTENDAPPVGKKRGCLNHTKRFWWAYGLALCALIVLVVCLLIFVAVPKIAQKKMDAAVLDIQGVA
VRDTKPDGYRMDVNSTMETDGSMHADIDEFRADLVLTDVKDGLDPVFASLTFKKTPVEKLIKVNVSEEANITNRA
GFTMFNTLMYQRESVRVIVRGETRIKPAGLNRKYSVKLFRNYVFKGLNRFQGATVDGLVDITALKGTPNFKGKAV
IPNRSIFTLEIGNASFTNFADGQNLGTMTINNLVLRPGDNEVDVEAMLDQIKMLKIMTKRPYCETGIVPFDVLGT
KVVNNGEELDYFTKALGSANQTIDIDIGKILRKSLPDLPVACA*
Coding >Ophcf2|07260
ATGTCTCACGACTCCAAGAACATGGTCTCTCAGACGGAGAATGATGCTCCTCCTGTCGGCAAGAAGCGTGGCTGT
CTCAACCATACCAAGCGGTTCTGGTGGGCTTACGGCCTGGCTCTCTGTGCCTTGATCGTTCTCGTCGTTTGTCTA
CTCATCTTCGTCGCCGTTCCCAAAATCGCTCAGAAAAAGATGGACGCTGCTGTTCTCGACATTCAGGGCGTTGCC
GTCCGAGATACCAAGCCTGACGGGTATCGGATGGATGTCAACTCCACCATGGAGACTGATGGCTCTATGCATGCC
GACATTGACGAGTTCAGGGCCGACTTGGTCCTCACCGACGTTAAGGACGGTCTTGACCCTGTCTTTGCCTCGCTC
ACCTTCAAGAAAACCCCGGTTGAGAAGCTCATCAAGGTCAACGTCTCCGAGGAGGCAAACATCACAAACCGTGCG
GGCTTCACCATGTTCAACACGCTCATGTATCAGAGGGAGTCGGTCCGTGTCATCGTCAGGGGCGAGACTCGCATC
AAGCCGGCCGGTCTGAACAGGAAGTACTCGGTCAAGCTGTTCAGGAATTACGTCTTCAAGGGCTTGAATCGCTTT
CAGGGCGCGACGGTCGATGGCCTCGTTGACATCACTGCCCTCAAGGGAACTCCCAACTTCAAGGGCAAGGCCGTC
ATCCCTAACCGGTCCATCTTCACTCTCGAGATTGGAAACGCCTCCTTTACCAACTTTGCCGATGGCCAGAACCTC
GGAACCATGACCATCAATAACCTGGTTCTCAGACCGGGCGACAACGAGGTCGACGTCGAGGCTATGCTCGATCAG
ATCAAGATGCTGAAAATCATGACCAAGAGGCCCTATTGCGAGACGGGCATCGTGCCCTTTGATGTCCTGGGCACC
AAGGTTGTCAACAACGGCGAGGAACTCGACTACTTCACAAAGGCCCTCGGCAGCGCCAACCAGACCATTGACATT
GACATTGGCAAGATCCTCCGCAAGAGCTTGCCCGACCTGCCGGTGGCTTGCGCTTGA
Transcript >Ophcf2|07260
ATGTCTCACGACTCCAAGAACATGGTCTCTCAGACGGAGAATGATGCTCCTCCTGTCGGCAAGAAGCGTGGCTGT
CTCAACCATACCAAGCGGTTCTGGTGGGCTTACGGCCTGGCTCTCTGTGCCTTGATCGTTCTCGTCGTTTGTCTA
CTCATCTTCGTCGCCGTTCCCAAAATCGCTCAGAAAAAGATGGACGCTGCTGTTCTCGACATTCAGGGCGTTGCC
GTCCGAGATACCAAGCCTGACGGGTATCGGATGGATGTCAACTCCACCATGGAGACTGATGGCTCTATGCATGCC
GACATTGACGAGTTCAGGGCCGACTTGGTCCTCACCGACGTTAAGGACGGTCTTGACCCTGTCTTTGCCTCGCTC
ACCTTCAAGAAAACCCCGGTTGAGAAGCTCATCAAGGTCAACGTCTCCGAGGAGGCAAACATCACAAACCGTGCG
GGCTTCACCATGTTCAACACGCTCATGTATCAGAGGGAGTCGGTCCGTGTCATCGTCAGGGGCGAGACTCGCATC
AAGCCGGCCGGTCTGAACAGGAAGTACTCGGTCAAGCTGTTCAGGAATTACGTCTTCAAGGGCTTGAATCGCTTT
CAGGGCGCGACGGTCGATGGCCTCGTTGACATCACTGCCCTCAAGGGAACTCCCAACTTCAAGGGCAAGGCCGTC
ATCCCTAACCGGTCCATCTTCACTCTCGAGATTGGAAACGCCTCCTTTACCAACTTTGCCGATGGCCAGAACCTC
GGAACCATGACCATCAATAACCTGGTTCTCAGACCGGGCGACAACGAGGTCGACGTCGAGGCTATGCTCGATCAG
ATCAAGATGCTGAAAATCATGACCAAGAGGCCCTATTGCGAGACGGGCATCGTGCCCTTTGATGTCCTGGGCACC
AAGGTTGTCAACAACGGCGAGGAACTCGACTACTTCACAAAGGCCCTCGGCAGCGCCAACCAGACCATTGACATT
GACATTGGCAAGATCCTCCGCAAGAGCTTGCCCGACCTGCCGGTGGCTTGCGCTTGA
Gene >Ophcf2|07260
ATGTCTCACGACTCCAAGAACATGGTCTCTCAGACGGAGAATGATGCTCCTCCTGTCGGCAAGAAGCGTGGCTGT
CTCAACCATACCAAGCGGTTCTGGTGGGCTTACGGCCTGGCTCTCTGTGCCTTGATCGTTCTCGTCGTTTGTCTA
CTGTGAGGGGGGACCCCTTCTCAATGACGGGGGAAGACGGTCCTCGCTGACTCGTTGACTATACAGCATCTTCGT
CGCCGTTCCCAAAATCGCTCAGAAAAAGATGGACGCTGCTGTTCTCGACATTCAGGGCGTTGCCGTCCGAGATAC
CAAGCCTGACGGGTATCGGATGGATGTCAACTCCACCATGGAGACTGATGGCTCTATGCATGCCGACATTGACGA
GTTCAGGGCCGACTTGGTCCTCACCGACGTTAAGGACGGTCTTGACCCTGTCTTTGCCTCGCTCACCTTCAAGAA
AACCCCGGTTGAGAAGCTCATCAAGGTCAACGTCTCCGAGGAGGCAAACATCACAAACCGTGCGGGCTTCACCAT
GTTCAACACGCTCATGTATCAGAGGGAGTCGGTCCGTGTCATCGTCAGGGGCGAGACTCGCATCAAGCCGGCCGG
TCTGAACAGGAAGTACTCGGTCAAGCTGTTCAGGAATTACGTCTTCAAGGGCTTGAATCGCTTTCAGGGCGCGAC
GGTCGATGGCCTCGTTGACATCACTGCCCTCAAGGGAACTCCCAACTTCAAGGGCAAGGCCGTCATCCCTAACCG
GTCCATCTTCACTCTCGAGATTGTGGGTTTCCTCCATTCTGTTGTACGTTTCGGCATCGCTGACGACGTCACTTG
CAGGGAAACGCCTCCTTTACCAACTTTGCCGATGGCCAGAACCTCGGAACCATGACCATCAATAACCTGGTTCTC
AGACCGGGCGACAACGAGGTCGACGTCGAGGCTATGCTCGATCAGATCAAGATGCTGAAAATCATGACCAAGAGG
CCCTATTGCGAGACGGGCATCGTGCCCTTTGATGTCCTGGGCACCAAGGTTGTCAACAACGGCGAGGAACTCGAC
TACTTCACAAAGGCCCTCGGCAGCGCCAACCAGACCATTGACATTGACATTGGCAAGATCCTCCGCAAGAGCTTG
CCCGACCTGCCGGTGGCTTGCGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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